Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS03125

Experiment: R2A with SpecU metal mix 1 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS03120 and LRK54_RS03125 are separated by 111 nucleotidesLRK54_RS03125 and LRK54_RS03130 are separated by 159 nucleotides LRK54_RS03120: LRK54_RS03120 - protein translocase subunit SecD, at 672,205 to 674,088 _RS03120 LRK54_RS03125: LRK54_RS03125 - preprotein translocase subunit YajC, at 674,200 to 674,532 _RS03125 LRK54_RS03130: LRK54_RS03130 - tRNA guanosine(34) transglycosylase Tgt, at 674,692 to 675,819 _RS03130 Position (kb) 674 675Strain fitness (log2 ratio) -2 -1 0 1at 674.427 kb on - strand, within LRK54_RS03125at 674.427 kb on - strand, within LRK54_RS03125at 674.427 kb on - strand, within LRK54_RS03125at 674.427 kb on - strand, within LRK54_RS03125at 674.427 kb on - strand, within LRK54_RS03125at 674.427 kb on - strand, within LRK54_RS03125at 674.427 kb on - strand, within LRK54_RS03125at 674.427 kb on - strand, within LRK54_RS03125at 674.427 kb on - strand, within LRK54_RS03125at 674.427 kb on - strand, within LRK54_RS03125at 674.551 kb on - strandat 674.551 kb on - strandat 674.551 kb on - strandat 674.551 kb on - strandat 674.551 kb on - strandat 674.601 kb on - strandat 674.601 kb on - strandat 674.601 kb on - strandat 674.601 kb on - strandat 674.601 kb on - strandat 674.693 kb on + strandat 674.694 kb on - strandat 674.694 kb on - strandat 674.694 kb on - strandat 674.694 kb on - strandat 674.694 kb on - strandat 674.694 kb on - strandat 674.723 kb on + strandat 674.723 kb on + strandat 674.723 kb on + strandat 674.723 kb on + strandat 674.723 kb on + strandat 674.724 kb on - strandat 674.724 kb on - strandat 674.724 kb on - strandat 674.724 kb on - strandat 674.724 kb on - strandat 674.724 kb on - strandat 674.724 kb on - strandat 674.724 kb on - strandat 674.724 kb on - strandat 674.724 kb on - strandat 674.724 kb on - strandat 674.724 kb on - strandat 674.795 kb on + strandat 674.795 kb on + strandat 674.795 kb on + strandat 674.795 kb on + strandat 674.795 kb on + strandat 674.795 kb on + strandat 674.795 kb on + strandat 674.795 kb on + strandat 674.795 kb on + strandat 674.796 kb on - strandat 674.796 kb on - strandat 674.796 kb on - strandat 674.796 kb on - strandat 674.796 kb on - strandat 674.796 kb on - strandat 674.796 kb on - strandat 674.796 kb on - strandat 674.796 kb on - strandat 674.798 kb on + strandat 674.798 kb on + strandat 674.798 kb on + strandat 674.798 kb on + strandat 674.798 kb on + strandat 674.798 kb on + strandat 674.867 kb on + strand, within LRK54_RS03130at 674.867 kb on + strand, within LRK54_RS03130at 674.867 kb on + strand, within LRK54_RS03130at 674.867 kb on + strand, within LRK54_RS03130at 674.867 kb on + strand, within LRK54_RS03130at 674.868 kb on - strand, within LRK54_RS03130at 674.868 kb on - strand, within LRK54_RS03130at 674.868 kb on - strand, within LRK54_RS03130at 674.868 kb on - strand, within LRK54_RS03130at 674.868 kb on - strand, within LRK54_RS03130at 674.868 kb on - strand, within LRK54_RS03130at 674.897 kb on + strand, within LRK54_RS03130at 674.897 kb on + strand, within LRK54_RS03130at 674.897 kb on + strand, within LRK54_RS03130at 674.898 kb on - strand, within LRK54_RS03130at 674.898 kb on - strand, within LRK54_RS03130at 674.898 kb on - strand, within LRK54_RS03130at 674.898 kb on - strand, within LRK54_RS03130at 674.898 kb on - strand, within LRK54_RS03130at 674.898 kb on - strand, within LRK54_RS03130at 674.898 kb on - strand, within LRK54_RS03130at 674.898 kb on - strand, within LRK54_RS03130at 674.939 kb on + strand, within LRK54_RS03130at 674.939 kb on + strand, within LRK54_RS03130at 674.939 kb on + strand, within LRK54_RS03130at 674.939 kb on + strand, within LRK54_RS03130at 674.939 kb on + strand, within LRK54_RS03130at 674.939 kb on + strand, within LRK54_RS03130at 674.939 kb on + strand, within LRK54_RS03130at 674.939 kb on + strand, within LRK54_RS03130at 674.939 kb on + strand, within LRK54_RS03130at 674.940 kb on - strand, within LRK54_RS03130at 674.940 kb on - strand, within LRK54_RS03130at 674.940 kb on - strand, within LRK54_RS03130at 674.940 kb on - strand, within LRK54_RS03130at 674.940 kb on - strand, within LRK54_RS03130at 674.940 kb on - strand, within LRK54_RS03130at 674.940 kb on - strand, within LRK54_RS03130at 674.940 kb on - strand, within LRK54_RS03130at 674.965 kb on - strand, within LRK54_RS03130at 675.006 kb on + strand, within LRK54_RS03130at 675.006 kb on + strand, within LRK54_RS03130at 675.007 kb on - strand, within LRK54_RS03130at 675.007 kb on - strand, within LRK54_RS03130at 675.086 kb on + strand, within LRK54_RS03130at 675.182 kb on + strand, within LRK54_RS03130at 675.183 kb on - strand, within LRK54_RS03130at 675.239 kb on + strand, within LRK54_RS03130at 675.239 kb on + strand, within LRK54_RS03130at 675.240 kb on - strand, within LRK54_RS03130at 675.240 kb on - strand, within LRK54_RS03130at 675.369 kb on - strand, within LRK54_RS03130

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with SpecU metal mix 1 X
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674,427 - LRK54_RS03125 0.68 +0.7
674,427 - LRK54_RS03125 0.68 -1.6
674,427 - LRK54_RS03125 0.68 -0.9
674,427 - LRK54_RS03125 0.68 -0.6
674,427 - LRK54_RS03125 0.68 -0.5
674,427 - LRK54_RS03125 0.68 -0.3
674,427 - LRK54_RS03125 0.68 +0.7
674,427 - LRK54_RS03125 0.68 -0.3
674,427 - LRK54_RS03125 0.68 -1.9
674,427 - LRK54_RS03125 0.68 +0.7
674,551 - +0.3
674,551 - -0.4
674,551 - +0.1
674,551 - -0.3
674,551 - +0.6
674,601 - -0.7
674,601 - +0.3
674,601 - -0.3
674,601 - -0.5
674,601 - -0.6
674,693 + -2.6
674,694 - -0.3
674,694 - +1.7
674,694 - -1.9
674,694 - +0.7
674,694 - -1.9
674,694 - +0.6
674,723 + -0.9
674,723 + -0.8
674,723 + -1.3
674,723 + +0.0
674,723 + +0.7
674,724 - +0.3
674,724 - -1.6
674,724 - -1.6
674,724 - +0.7
674,724 - +1.7
674,724 - +1.5
674,724 - -1.0
674,724 - -0.1
674,724 - +0.3
674,724 - -0.3
674,724 - -0.0
674,724 - -0.3
674,795 + -1.1
674,795 + -1.0
674,795 + -0.1
674,795 + -0.4
674,795 + -0.7
674,795 + -2.1
674,795 + +0.7
674,795 + -1.4
674,795 + -0.7
674,796 - +1.5
674,796 - +1.1
674,796 - -1.5
674,796 - -1.0
674,796 - +0.7
674,796 - -0.8
674,796 - +0.0
674,796 - +0.7
674,796 - +0.7
674,798 + -0.9
674,798 + -1.9
674,798 + +0.0
674,798 + -1.0
674,798 + -2.6
674,798 + -0.9
674,867 + LRK54_RS03130 0.16 -0.3
674,867 + LRK54_RS03130 0.16 -1.3
674,867 + LRK54_RS03130 0.16 -0.4
674,867 + LRK54_RS03130 0.16 -0.3
674,867 + LRK54_RS03130 0.16 -0.5
674,868 - LRK54_RS03130 0.16 -0.6
674,868 - LRK54_RS03130 0.16 +0.7
674,868 - LRK54_RS03130 0.16 -1.1
674,868 - LRK54_RS03130 0.16 -1.3
674,868 - LRK54_RS03130 0.16 -0.4
674,868 - LRK54_RS03130 0.16 +0.3
674,897 + LRK54_RS03130 0.18 -0.9
674,897 + LRK54_RS03130 0.18 -2.1
674,897 + LRK54_RS03130 0.18 -0.9
674,898 - LRK54_RS03130 0.18 +0.5
674,898 - LRK54_RS03130 0.18 +1.3
674,898 - LRK54_RS03130 0.18 -0.3
674,898 - LRK54_RS03130 0.18 -0.9
674,898 - LRK54_RS03130 0.18 -0.0
674,898 - LRK54_RS03130 0.18 +1.0
674,898 - LRK54_RS03130 0.18 -0.9
674,898 - LRK54_RS03130 0.18 -1.3
674,939 + LRK54_RS03130 0.22 +0.2
674,939 + LRK54_RS03130 0.22 -0.3
674,939 + LRK54_RS03130 0.22 +1.3
674,939 + LRK54_RS03130 0.22 +0.1
674,939 + LRK54_RS03130 0.22 +0.1
674,939 + LRK54_RS03130 0.22 -1.6
674,939 + LRK54_RS03130 0.22 -0.1
674,939 + LRK54_RS03130 0.22 -1.4
674,939 + LRK54_RS03130 0.22 -0.0
674,940 - LRK54_RS03130 0.22 -1.4
674,940 - LRK54_RS03130 0.22 -1.9
674,940 - LRK54_RS03130 0.22 +1.3
674,940 - LRK54_RS03130 0.22 +0.5
674,940 - LRK54_RS03130 0.22 -2.1
674,940 - LRK54_RS03130 0.22 -0.1
674,940 - LRK54_RS03130 0.22 -1.4
674,940 - LRK54_RS03130 0.22 -0.3
674,965 - LRK54_RS03130 0.24 -1.3
675,006 + LRK54_RS03130 0.28 +1.5
675,006 + LRK54_RS03130 0.28 +0.7
675,007 - LRK54_RS03130 0.28 -2.4
675,007 - LRK54_RS03130 0.28 -0.9
675,086 + LRK54_RS03130 0.35 -0.9
675,182 + LRK54_RS03130 0.43 -0.2
675,183 - LRK54_RS03130 0.44 -0.3
675,239 + LRK54_RS03130 0.48 -0.5
675,239 + LRK54_RS03130 0.48 -0.1
675,240 - LRK54_RS03130 0.49 +0.0
675,240 - LRK54_RS03130 0.49 -0.8
675,369 - LRK54_RS03130 0.60 -2.0

Or see this region's nucleotide sequence