Experiment: R2A with SpecU metal mix 1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02530 and LRK54_RS02535 are separated by 289 nucleotides LRK54_RS02535 and LRK54_RS02540 are separated by 151 nucleotides LRK54_RS02540 and LRK54_RS02545 are separated by 14 nucleotides
LRK54_RS02530: LRK54_RS02530 - replicative DNA helicase, at 547,536 to 548,930
_RS02530
LRK54_RS02535: LRK54_RS02535 - 50S ribosomal protein L9, at 549,220 to 549,669
_RS02535
LRK54_RS02540: LRK54_RS02540 - 30S ribosomal protein S18, at 549,821 to 550,051
_RS02540
LRK54_RS02545: LRK54_RS02545 - 30S ribosomal protein S6, at 550,066 to 550,488
_RS02545
Position (kb) 549
550 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 548.937 kb on - strand at 548.937 kb on - strand at 548.937 kb on - strand at 548.950 kb on - strand at 549.034 kb on + strand at 549.034 kb on + strand at 549.034 kb on + strand at 549.035 kb on - strand at 549.035 kb on - strand at 549.035 kb on - strand at 549.035 kb on - strand at 549.035 kb on - strand at 549.035 kb on - strand at 549.035 kb on - strand at 549.035 kb on - strand at 549.035 kb on - strand at 549.035 kb on - strand at 549.051 kb on + strand at 549.051 kb on + strand at 549.052 kb on - strand at 549.072 kb on + strand at 549.072 kb on + strand at 549.072 kb on + strand at 549.072 kb on + strand at 549.072 kb on + strand at 549.072 kb on + strand at 549.073 kb on - strand at 549.073 kb on - strand at 549.073 kb on - strand at 549.073 kb on - strand at 549.073 kb on - strand at 549.148 kb on + strand at 549.148 kb on + strand at 549.148 kb on + strand at 549.149 kb on - strand at 549.149 kb on - strand at 549.149 kb on - strand at 549.214 kb on + strand at 549.214 kb on + strand at 549.214 kb on + strand at 549.215 kb on - strand at 549.215 kb on - strand at 549.215 kb on - strand at 549.215 kb on - strand at 549.215 kb on - strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.221 kb on + strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.222 kb on - strand at 549.290 kb on + strand, within LRK54_RS02535 at 549.290 kb on + strand, within LRK54_RS02535 at 549.290 kb on + strand, within LRK54_RS02535 at 549.290 kb on + strand, within LRK54_RS02535 at 549.290 kb on + strand, within LRK54_RS02535 at 549.290 kb on + strand, within LRK54_RS02535 at 549.291 kb on - strand at 549.291 kb on - strand, within LRK54_RS02535 at 549.291 kb on - strand, within LRK54_RS02535 at 549.291 kb on - strand, within LRK54_RS02535 at 549.327 kb on + strand, within LRK54_RS02535 at 549.328 kb on - strand, within LRK54_RS02535 at 549.328 kb on - strand, within LRK54_RS02535 at 549.328 kb on - strand, within LRK54_RS02535 at 549.328 kb on - strand, within LRK54_RS02535 at 549.509 kb on + strand, within LRK54_RS02535 at 549.509 kb on + strand, within LRK54_RS02535 at 549.509 kb on + strand, within LRK54_RS02535 at 549.509 kb on + strand, within LRK54_RS02535 at 549.510 kb on - strand, within LRK54_RS02535 at 549.510 kb on - strand, within LRK54_RS02535 at 549.510 kb on - strand, within LRK54_RS02535 at 549.510 kb on - strand, within LRK54_RS02535 at 549.510 kb on - strand, within LRK54_RS02535 at 549.510 kb on - strand, within LRK54_RS02535 at 549.584 kb on + strand, within LRK54_RS02535 at 549.584 kb on + strand, within LRK54_RS02535 at 549.584 kb on + strand, within LRK54_RS02535 at 549.584 kb on + strand, within LRK54_RS02535 at 549.584 kb on + strand, within LRK54_RS02535 at 549.584 kb on + strand, within LRK54_RS02535 at 549.584 kb on + strand, within LRK54_RS02535 at 549.584 kb on + strand, within LRK54_RS02535 at 549.584 kb on + strand, within LRK54_RS02535 at 549.584 kb on + strand, within LRK54_RS02535 at 549.584 kb on + strand, within LRK54_RS02535 at 549.584 kb on + strand, within LRK54_RS02535 at 549.585 kb on - strand, within LRK54_RS02535 at 549.585 kb on - strand, within LRK54_RS02535 at 549.585 kb on - strand, within LRK54_RS02535 at 549.585 kb on - strand, within LRK54_RS02535 at 549.585 kb on - strand, within LRK54_RS02535 at 549.585 kb on - strand, within LRK54_RS02535 at 549.585 kb on - strand, within LRK54_RS02535 at 549.585 kb on - strand, within LRK54_RS02535 at 549.585 kb on - strand, within LRK54_RS02535 at 549.631 kb on - strand at 549.790 kb on + strand at 549.790 kb on + strand at 549.804 kb on + strand at 549.804 kb on + strand at 549.804 kb on + strand at 549.844 kb on - strand, within LRK54_RS02540 at 550.600 kb on - strand at 550.600 kb on - strand at 550.643 kb on + strand at 550.643 kb on + strand at 550.643 kb on + strand at 550.643 kb on + strand at 550.644 kb on - strand at 550.644 kb on - strand at 550.644 kb on - strand at 550.644 kb on - strand at 550.644 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with SpecU metal mix 1 X remove 548,937 - +1.6 548,937 - -0.5 548,937 - -1.6 548,950 - +0.9 549,034 + -1.1 549,034 + -0.4 549,034 + -0.8 549,035 - +0.5 549,035 - +0.1 549,035 - -1.2 549,035 - -0.5 549,035 - -0.0 549,035 - +0.2 549,035 - -0.6 549,035 - -0.9 549,035 - +0.1 549,035 - +0.7 549,051 + +0.3 549,051 + +1.3 549,052 - +0.4 549,072 + -0.1 549,072 + +0.6 549,072 + +0.0 549,072 + +0.3 549,072 + +1.3 549,072 + -0.6 549,073 - -0.3 549,073 - +0.1 549,073 - +0.5 549,073 - +0.7 549,073 - +0.8 549,148 + +1.1 549,148 + +0.7 549,148 + -0.5 549,149 - -0.1 549,149 - -0.3 549,149 - +0.7 549,214 + +0.7 549,214 + -0.1 549,214 + -1.6 549,215 - -0.9 549,215 - -1.8 549,215 - -0.5 549,215 - +0.7 549,215 - -1.9 549,221 + -0.3 549,221 + -0.3 549,221 + +0.3 549,221 + -0.6 549,221 + -0.9 549,221 + -0.1 549,221 + -1.6 549,221 + +1.0 549,221 + -1.2 549,221 + -0.7 549,221 + -0.0 549,221 + -1.9 549,221 + +0.7 549,221 + +1.2 549,221 + +0.1 549,221 + +0.3 549,221 + -2.9 549,221 + -0.6 549,221 + -1.3 549,221 + -1.3 549,221 + -0.7 549,221 + +0.3 549,221 + -0.3 549,222 - -2.3 549,222 - -0.8 549,222 - +0.1 549,222 - +0.3 549,222 - +1.3 549,222 - -2.6 549,222 - -0.9 549,222 - +0.7 549,222 - +0.7 549,222 - -0.3 549,222 - -0.8 549,222 - -1.9 549,222 - +0.4 549,222 - -0.6 549,222 - -1.6 549,222 - -0.3 549,222 - +0.7 549,222 - -0.8 549,222 - +0.2 549,222 - +2.3 549,222 - -0.3 549,222 - -1.3 549,222 - -1.6 549,222 - -0.5 549,222 - -0.3 549,222 - -0.9 549,222 - -1.2 549,222 - -2.3 549,222 - -1.1 549,222 - -0.7 549,222 - -1.1 549,222 - -0.6 549,222 - -0.7 549,222 - -0.3 549,290 + LRK54_RS02535 0.16 +0.1 549,290 + LRK54_RS02535 0.16 +0.3 549,290 + LRK54_RS02535 0.16 -0.3 549,290 + LRK54_RS02535 0.16 -1.3 549,290 + LRK54_RS02535 0.16 -3.6 549,290 + LRK54_RS02535 0.16 +0.2 549,291 - +0.7 549,291 - LRK54_RS02535 0.16 -0.3 549,291 - LRK54_RS02535 0.16 -0.3 549,291 - LRK54_RS02535 0.16 -1.6 549,327 + LRK54_RS02535 0.24 -0.9 549,328 - LRK54_RS02535 0.24 +0.7 549,328 - LRK54_RS02535 0.24 +0.1 549,328 - LRK54_RS02535 0.24 -2.1 549,328 - LRK54_RS02535 0.24 -2.1 549,509 + LRK54_RS02535 0.64 -0.9 549,509 + LRK54_RS02535 0.64 +0.0 549,509 + LRK54_RS02535 0.64 -1.3 549,509 + LRK54_RS02535 0.64 -0.9 549,510 - LRK54_RS02535 0.64 +0.1 549,510 - LRK54_RS02535 0.64 -2.1 549,510 - LRK54_RS02535 0.64 -1.3 549,510 - LRK54_RS02535 0.64 -0.3 549,510 - LRK54_RS02535 0.64 +0.7 549,510 - LRK54_RS02535 0.64 -0.3 549,584 + LRK54_RS02535 0.81 -0.3 549,584 + LRK54_RS02535 0.81 -0.3 549,584 + LRK54_RS02535 0.81 -1.9 549,584 + LRK54_RS02535 0.81 -0.3 549,584 + LRK54_RS02535 0.81 -1.6 549,584 + LRK54_RS02535 0.81 -0.9 549,584 + LRK54_RS02535 0.81 +0.3 549,584 + LRK54_RS02535 0.81 -2.1 549,584 + LRK54_RS02535 0.81 -0.9 549,584 + LRK54_RS02535 0.81 -2.1 549,584 + LRK54_RS02535 0.81 -1.6 549,584 + LRK54_RS02535 0.81 -0.9 549,585 - LRK54_RS02535 0.81 -1.6 549,585 - LRK54_RS02535 0.81 -2.3 549,585 - LRK54_RS02535 0.81 -0.9 549,585 - LRK54_RS02535 0.81 -0.3 549,585 - LRK54_RS02535 0.81 -0.9 549,585 - LRK54_RS02535 0.81 +1.7 549,585 - LRK54_RS02535 0.81 -1.3 549,585 - LRK54_RS02535 0.81 -2.1 549,585 - LRK54_RS02535 0.81 -1.3 549,631 - -0.3 549,790 + -0.9 549,790 + -0.3 549,804 + -1.4 549,804 + +1.3 549,804 + +0.7 549,844 - LRK54_RS02540 0.10 +0.2 550,600 - -0.9 550,600 - -0.3 550,643 + -0.1 550,643 + -1.9 550,643 + +0.3 550,643 + -0.7 550,644 - -0.1 550,644 - +0.2 550,644 - -0.4 550,644 - +1.0 550,644 - -0.1
Or see this region's nucleotide sequence