Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02520

Experiment: R2A with SpecU metal mix 1 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS02515 and LRK54_RS02520 are separated by 96 nucleotidesLRK54_RS02520 and LRK54_RS02525 are separated by 9 nucleotides LRK54_RS02515: LRK54_RS02515 - signal recognition particle protein, at 543,754 to 545,133 _RS02515 LRK54_RS02520: LRK54_RS02520 - cytochrome c biogenesis protein CcsA, at 545,230 to 546,027 _RS02520 LRK54_RS02525: LRK54_RS02525 - DNA repair protein RadA, at 546,037 to 547,422 _RS02525 Position (kb) 545 546 547Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 545.166 kb on - strandat 545.167 kb on + strandat 545.167 kb on + strandat 545.167 kb on + strandat 545.167 kb on + strandat 545.168 kb on - strandat 545.168 kb on - strandat 545.168 kb on - strandat 545.168 kb on - strandat 545.269 kb on + strandat 545.269 kb on + strandat 545.269 kb on + strandat 545.269 kb on + strandat 545.269 kb on + strandat 545.269 kb on + strandat 545.269 kb on + strandat 545.270 kb on - strandat 545.270 kb on - strandat 545.270 kb on - strandat 545.784 kb on + strand, within LRK54_RS02520at 545.784 kb on + strand, within LRK54_RS02520at 545.784 kb on + strand, within LRK54_RS02520at 545.784 kb on + strand, within LRK54_RS02520at 545.784 kb on + strand, within LRK54_RS02520at 545.784 kb on + strand, within LRK54_RS02520at 545.784 kb on + strand, within LRK54_RS02520at 545.784 kb on + strand, within LRK54_RS02520at 545.784 kb on + strand, within LRK54_RS02520at 545.784 kb on + strand, within LRK54_RS02520at 545.784 kb on + strand, within LRK54_RS02520at 545.784 kb on + strand, within LRK54_RS02520at 545.784 kb on + strand, within LRK54_RS02520at 545.785 kb on - strand, within LRK54_RS02520at 545.785 kb on - strand, within LRK54_RS02520at 545.785 kb on - strand, within LRK54_RS02520at 545.785 kb on - strand, within LRK54_RS02520at 545.785 kb on - strand, within LRK54_RS02520at 545.785 kb on - strand, within LRK54_RS02520at 545.785 kb on - strand, within LRK54_RS02520at 545.785 kb on - strand, within LRK54_RS02520at 545.896 kb on + strand, within LRK54_RS02520at 545.896 kb on + strand, within LRK54_RS02520at 545.896 kb on + strand, within LRK54_RS02520at 545.896 kb on + strand, within LRK54_RS02520at 545.896 kb on + strand, within LRK54_RS02520at 545.897 kb on - strand, within LRK54_RS02520at 545.897 kb on - strand, within LRK54_RS02520at 545.897 kb on - strand, within LRK54_RS02520at 546.025 kb on + strandat 546.025 kb on + strandat 546.025 kb on + strandat 546.026 kb on - strandat 546.026 kb on - strandat 546.026 kb on - strandat 546.026 kb on - strandat 546.026 kb on - strandat 546.026 kb on - strandat 546.026 kb on - strandat 546.026 kb on - strandat 546.026 kb on - strandat 546.274 kb on + strand, within LRK54_RS02525at 546.274 kb on + strand, within LRK54_RS02525at 546.356 kb on + strand, within LRK54_RS02525at 546.357 kb on - strand, within LRK54_RS02525at 546.357 kb on - strand, within LRK54_RS02525at 546.461 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.475 kb on + strand, within LRK54_RS02525at 546.476 kb on - strand, within LRK54_RS02525at 546.476 kb on - strand, within LRK54_RS02525at 546.476 kb on - strand, within LRK54_RS02525at 546.476 kb on - strand, within LRK54_RS02525at 546.476 kb on - strand, within LRK54_RS02525at 546.476 kb on - strand, within LRK54_RS02525at 546.476 kb on - strand, within LRK54_RS02525at 546.476 kb on - strand, within LRK54_RS02525at 546.476 kb on - strand, within LRK54_RS02525at 546.476 kb on - strand, within LRK54_RS02525at 546.476 kb on - strand, within LRK54_RS02525at 546.476 kb on - strand, within LRK54_RS02525at 546.476 kb on - strand, within LRK54_RS02525at 546.476 kb on - strand, within LRK54_RS02525at 546.692 kb on + strand, within LRK54_RS02525at 546.692 kb on + strand, within LRK54_RS02525at 546.692 kb on + strand, within LRK54_RS02525at 546.692 kb on + strand, within LRK54_RS02525at 546.692 kb on + strand, within LRK54_RS02525at 546.692 kb on + strand, within LRK54_RS02525at 546.692 kb on + strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.797 kb on + strand, within LRK54_RS02525at 546.797 kb on + strand, within LRK54_RS02525at 546.797 kb on + strand, within LRK54_RS02525at 546.797 kb on + strand, within LRK54_RS02525at 546.797 kb on + strand, within LRK54_RS02525at 546.798 kb on - strand, within LRK54_RS02525at 546.798 kb on - strand, within LRK54_RS02525at 546.863 kb on + strand, within LRK54_RS02525

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with SpecU metal mix 1 X
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545,166 - -0.3
545,167 + -1.1
545,167 + -1.0
545,167 + -0.5
545,167 + -0.9
545,168 - -1.4
545,168 - +0.2
545,168 - -0.9
545,168 - -1.3
545,269 + -2.9
545,269 + -0.9
545,269 + -1.0
545,269 + -1.0
545,269 + +0.4
545,269 + +1.7
545,269 + +0.9
545,270 - -1.4
545,270 - +0.3
545,270 - -1.3
545,784 + LRK54_RS02520 0.69 -1.4
545,784 + LRK54_RS02520 0.69 -2.8
545,784 + LRK54_RS02520 0.69 -0.8
545,784 + LRK54_RS02520 0.69 -2.1
545,784 + LRK54_RS02520 0.69 -0.3
545,784 + LRK54_RS02520 0.69 -0.5
545,784 + LRK54_RS02520 0.69 -0.7
545,784 + LRK54_RS02520 0.69 -0.2
545,784 + LRK54_RS02520 0.69 -1.2
545,784 + LRK54_RS02520 0.69 -2.3
545,784 + LRK54_RS02520 0.69 -0.5
545,784 + LRK54_RS02520 0.69 +1.7
545,784 + LRK54_RS02520 0.69 -0.7
545,785 - LRK54_RS02520 0.70 -2.0
545,785 - LRK54_RS02520 0.70 -1.2
545,785 - LRK54_RS02520 0.70 -1.3
545,785 - LRK54_RS02520 0.70 -0.3
545,785 - LRK54_RS02520 0.70 -1.3
545,785 - LRK54_RS02520 0.70 -1.6
545,785 - LRK54_RS02520 0.70 -1.9
545,785 - LRK54_RS02520 0.70 -1.4
545,896 + LRK54_RS02520 0.83 +1.7
545,896 + LRK54_RS02520 0.83 -1.9
545,896 + LRK54_RS02520 0.83 -0.1
545,896 + LRK54_RS02520 0.83 -0.9
545,896 + LRK54_RS02520 0.83 -2.1
545,897 - LRK54_RS02520 0.84 -0.1
545,897 - LRK54_RS02520 0.84 -0.6
545,897 - LRK54_RS02520 0.84 -0.4
546,025 + +0.2
546,025 + +0.0
546,025 + -0.1
546,026 - -0.9
546,026 - -0.5
546,026 - -0.4
546,026 - -0.4
546,026 - -0.5
546,026 - +0.7
546,026 - +0.0
546,026 - +0.4
546,026 - +0.1
546,274 + LRK54_RS02525 0.17 -0.4
546,274 + LRK54_RS02525 0.17 -1.1
546,356 + LRK54_RS02525 0.23 -2.8
546,357 - LRK54_RS02525 0.23 +1.7
546,357 - LRK54_RS02525 0.23 -0.6
546,461 + LRK54_RS02525 0.31 +2.7
546,475 + LRK54_RS02525 0.32 -0.2
546,475 + LRK54_RS02525 0.32 +0.7
546,475 + LRK54_RS02525 0.32 -0.1
546,475 + LRK54_RS02525 0.32 +1.4
546,475 + LRK54_RS02525 0.32 +0.1
546,475 + LRK54_RS02525 0.32 +0.4
546,475 + LRK54_RS02525 0.32 -0.3
546,475 + LRK54_RS02525 0.32 -2.1
546,475 + LRK54_RS02525 0.32 +0.7
546,475 + LRK54_RS02525 0.32 +1.0
546,475 + LRK54_RS02525 0.32 +1.7
546,475 + LRK54_RS02525 0.32 +1.3
546,475 + LRK54_RS02525 0.32 -0.2
546,475 + LRK54_RS02525 0.32 +1.2
546,475 + LRK54_RS02525 0.32 -0.6
546,476 - LRK54_RS02525 0.32 +1.1
546,476 - LRK54_RS02525 0.32 +0.4
546,476 - LRK54_RS02525 0.32 -2.5
546,476 - LRK54_RS02525 0.32 -0.1
546,476 - LRK54_RS02525 0.32 +0.2
546,476 - LRK54_RS02525 0.32 -0.2
546,476 - LRK54_RS02525 0.32 -0.9
546,476 - LRK54_RS02525 0.32 +1.1
546,476 - LRK54_RS02525 0.32 -1.4
546,476 - LRK54_RS02525 0.32 -0.3
546,476 - LRK54_RS02525 0.32 -0.8
546,476 - LRK54_RS02525 0.32 -0.1
546,476 - LRK54_RS02525 0.32 +1.3
546,476 - LRK54_RS02525 0.32 -0.6
546,692 + LRK54_RS02525 0.47 -0.6
546,692 + LRK54_RS02525 0.47 -1.1
546,692 + LRK54_RS02525 0.47 +0.2
546,692 + LRK54_RS02525 0.47 -0.8
546,692 + LRK54_RS02525 0.47 -0.6
546,692 + LRK54_RS02525 0.47 -0.1
546,692 + LRK54_RS02525 0.47 -1.1
546,693 - LRK54_RS02525 0.47 -0.6
546,693 - LRK54_RS02525 0.47 +0.3
546,693 - LRK54_RS02525 0.47 -1.2
546,693 - LRK54_RS02525 0.47 -0.9
546,693 - LRK54_RS02525 0.47 +0.5
546,693 - LRK54_RS02525 0.47 +1.7
546,693 - LRK54_RS02525 0.47 -1.5
546,693 - LRK54_RS02525 0.47 +1.1
546,693 - LRK54_RS02525 0.47 -0.5
546,797 + LRK54_RS02525 0.55 -0.6
546,797 + LRK54_RS02525 0.55 -1.6
546,797 + LRK54_RS02525 0.55 -2.3
546,797 + LRK54_RS02525 0.55 +0.5
546,797 + LRK54_RS02525 0.55 +1.7
546,798 - LRK54_RS02525 0.55 +0.6
546,798 - LRK54_RS02525 0.55 -1.3
546,863 + LRK54_RS02525 0.60 -1.3

Or see this region's nucleotide sequence