Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02175

Experiment: R2A with SpecU metal mix 1 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS02165 and LRK54_RS02170 are separated by 126 nucleotidesLRK54_RS02170 and LRK54_RS02175 are separated by 149 nucleotidesLRK54_RS02175 and LRK54_RS02180 overlap by 4 nucleotides LRK54_RS02165: LRK54_RS02165 - RNA polymerase sigma factor, at 464,998 to 466,275 _RS02165 LRK54_RS02170: LRK54_RS02170 - YciI family protein, at 466,402 to 466,821 _RS02170 LRK54_RS02175: LRK54_RS02175 - exodeoxyribonuclease V subunit gamma, at 466,971 to 470,414 _RS02175 LRK54_RS02180: LRK54_RS02180 - UvrD-helicase domain-containing protein, at 470,411 to 473,992 _RS02180 Position (kb) 466 467 468 469 470 471Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 466.733 kb on + strand, within LRK54_RS02170at 466.733 kb on + strand, within LRK54_RS02170at 466.733 kb on + strand, within LRK54_RS02170at 466.733 kb on + strand, within LRK54_RS02170at 466.734 kb on - strand, within LRK54_RS02170at 466.734 kb on - strand, within LRK54_RS02170at 466.734 kb on - strand, within LRK54_RS02170at 466.734 kb on - strand, within LRK54_RS02170at 466.734 kb on - strand, within LRK54_RS02170at 466.734 kb on - strand, within LRK54_RS02170at 466.734 kb on - strand, within LRK54_RS02170at 466.734 kb on - strand, within LRK54_RS02170at 466.734 kb on - strand, within LRK54_RS02170at 466.804 kb on + strandat 466.804 kb on + strandat 466.805 kb on - strandat 466.805 kb on - strandat 466.805 kb on - strandat 466.805 kb on - strandat 466.805 kb on - strandat 466.934 kb on + strandat 466.934 kb on + strandat 466.934 kb on + strandat 466.935 kb on - strandat 466.935 kb on - strandat 466.935 kb on - strandat 467.337 kb on + strand, within LRK54_RS02175at 467.337 kb on + strand, within LRK54_RS02175at 467.337 kb on + strand, within LRK54_RS02175at 467.337 kb on + strand, within LRK54_RS02175at 467.337 kb on + strand, within LRK54_RS02175at 467.338 kb on - strand, within LRK54_RS02175at 467.338 kb on - strand, within LRK54_RS02175at 467.338 kb on - strand, within LRK54_RS02175at 467.338 kb on - strand, within LRK54_RS02175at 467.400 kb on + strand, within LRK54_RS02175at 467.400 kb on + strand, within LRK54_RS02175at 467.400 kb on + strand, within LRK54_RS02175at 467.401 kb on - strand, within LRK54_RS02175at 467.401 kb on - strand, within LRK54_RS02175at 467.409 kb on + strand, within LRK54_RS02175at 467.409 kb on + strand, within LRK54_RS02175at 467.410 kb on - strand, within LRK54_RS02175at 467.412 kb on - strand, within LRK54_RS02175at 467.419 kb on - strand, within LRK54_RS02175at 467.679 kb on + strand, within LRK54_RS02175at 467.679 kb on + strand, within LRK54_RS02175at 467.679 kb on + strand, within LRK54_RS02175at 467.680 kb on - strand, within LRK54_RS02175at 467.680 kb on - strand, within LRK54_RS02175at 467.680 kb on - strand, within LRK54_RS02175at 467.712 kb on + strand, within LRK54_RS02175at 467.712 kb on + strand, within LRK54_RS02175at 467.713 kb on - strand, within LRK54_RS02175at 467.766 kb on + strand, within LRK54_RS02175at 467.766 kb on + strand, within LRK54_RS02175at 467.766 kb on + strand, within LRK54_RS02175at 467.766 kb on + strand, within LRK54_RS02175at 467.766 kb on + strand, within LRK54_RS02175at 467.766 kb on + strand, within LRK54_RS02175at 467.766 kb on + strand, within LRK54_RS02175at 467.766 kb on + strand, within LRK54_RS02175at 467.766 kb on + strand, within LRK54_RS02175at 467.766 kb on + strand, within LRK54_RS02175at 467.766 kb on + strand, within LRK54_RS02175at 467.766 kb on + strand, within LRK54_RS02175at 467.767 kb on - strand, within LRK54_RS02175at 467.767 kb on - strand, within LRK54_RS02175at 467.769 kb on + strand, within LRK54_RS02175at 467.770 kb on - strand, within LRK54_RS02175at 467.770 kb on - strand, within LRK54_RS02175at 468.154 kb on - strand, within LRK54_RS02175at 468.154 kb on - strand, within LRK54_RS02175at 468.162 kb on + strand, within LRK54_RS02175at 468.162 kb on + strand, within LRK54_RS02175at 468.163 kb on - strand, within LRK54_RS02175at 468.163 kb on - strand, within LRK54_RS02175at 468.163 kb on - strand, within LRK54_RS02175at 468.163 kb on - strand, within LRK54_RS02175at 468.507 kb on + strand, within LRK54_RS02175at 468.507 kb on + strand, within LRK54_RS02175at 468.507 kb on + strand, within LRK54_RS02175at 468.507 kb on + strand, within LRK54_RS02175at 468.507 kb on + strand, within LRK54_RS02175at 468.507 kb on + strand, within LRK54_RS02175at 468.507 kb on + strand, within LRK54_RS02175at 468.507 kb on + strand, within LRK54_RS02175at 468.507 kb on + strand, within LRK54_RS02175at 468.508 kb on - strand, within LRK54_RS02175at 468.508 kb on - strand, within LRK54_RS02175at 468.508 kb on - strand, within LRK54_RS02175at 468.508 kb on - strand, within LRK54_RS02175at 468.508 kb on - strand, within LRK54_RS02175at 468.508 kb on - strand, within LRK54_RS02175at 468.508 kb on - strand, within LRK54_RS02175at 469.068 kb on + strand, within LRK54_RS02175at 469.069 kb on - strand, within LRK54_RS02175at 469.119 kb on + strand, within LRK54_RS02175at 469.119 kb on + strand, within LRK54_RS02175at 469.119 kb on + strand, within LRK54_RS02175at 469.119 kb on + strand, within LRK54_RS02175at 469.119 kb on + strand, within LRK54_RS02175at 469.119 kb on + strand, within LRK54_RS02175at 469.119 kb on + strand, within LRK54_RS02175at 469.120 kb on - strand, within LRK54_RS02175at 469.120 kb on - strand, within LRK54_RS02175at 469.120 kb on - strand, within LRK54_RS02175at 469.120 kb on - strand, within LRK54_RS02175at 469.120 kb on - strand, within LRK54_RS02175at 469.120 kb on - strand, within LRK54_RS02175at 469.120 kb on - strand, within LRK54_RS02175at 469.278 kb on + strand, within LRK54_RS02175at 469.278 kb on + strand, within LRK54_RS02175at 469.279 kb on - strand, within LRK54_RS02175at 469.279 kb on - strand, within LRK54_RS02175at 469.279 kb on - strand, within LRK54_RS02175at 469.281 kb on + strand, within LRK54_RS02175at 469.281 kb on + strand, within LRK54_RS02175at 469.281 kb on + strand, within LRK54_RS02175at 469.281 kb on + strand, within LRK54_RS02175at 469.281 kb on + strand, within LRK54_RS02175at 469.282 kb on - strand, within LRK54_RS02175at 469.282 kb on - strand, within LRK54_RS02175at 469.332 kb on + strand, within LRK54_RS02175at 469.332 kb on + strand, within LRK54_RS02175at 469.837 kb on + strand, within LRK54_RS02175at 469.837 kb on + strand, within LRK54_RS02175at 469.838 kb on - strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.921 kb on - strand, within LRK54_RS02175at 469.921 kb on - strand, within LRK54_RS02175at 470.254 kb on - strandat 470.254 kb on - strandat 470.522 kb on + strandat 470.522 kb on + strandat 470.522 kb on + strandat 470.522 kb on + strandat 470.522 kb on + strandat 470.522 kb on + strandat 470.522 kb on + strandat 470.523 kb on - strandat 470.523 kb on - strandat 470.523 kb on - strandat 470.523 kb on - strandat 470.556 kb on + strandat 470.557 kb on - strandat 470.924 kb on + strand, within LRK54_RS02180at 470.925 kb on - strand, within LRK54_RS02180at 470.925 kb on - strand, within LRK54_RS02180at 471.134 kb on + strand, within LRK54_RS02180at 471.134 kb on + strand, within LRK54_RS02180at 471.134 kb on + strand, within LRK54_RS02180at 471.134 kb on + strand, within LRK54_RS02180at 471.134 kb on + strand, within LRK54_RS02180at 471.135 kb on - strand, within LRK54_RS02180at 471.135 kb on - strand, within LRK54_RS02180at 471.252 kb on + strand, within LRK54_RS02180

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with SpecU metal mix 1 X
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466,733 + LRK54_RS02170 0.79 +1.1
466,733 + LRK54_RS02170 0.79 -0.2
466,733 + LRK54_RS02170 0.79 -0.7
466,733 + LRK54_RS02170 0.79 +1.7
466,734 - LRK54_RS02170 0.79 -2.5
466,734 - LRK54_RS02170 0.79 -0.9
466,734 - LRK54_RS02170 0.79 +0.7
466,734 - LRK54_RS02170 0.79 -2.1
466,734 - LRK54_RS02170 0.79 +1.7
466,734 - LRK54_RS02170 0.79 -0.0
466,734 - LRK54_RS02170 0.79 -1.6
466,734 - LRK54_RS02170 0.79 -0.5
466,734 - LRK54_RS02170 0.79 -0.0
466,804 + -0.4
466,804 + -1.1
466,805 - +0.2
466,805 - +0.5
466,805 - +0.2
466,805 - -0.6
466,805 - -0.6
466,934 + -0.2
466,934 + -0.6
466,934 + +1.9
466,935 - -0.3
466,935 - -0.7
466,935 - +1.1
467,337 + LRK54_RS02175 0.11 +0.7
467,337 + LRK54_RS02175 0.11 -1.1
467,337 + LRK54_RS02175 0.11 -1.9
467,337 + LRK54_RS02175 0.11 +0.0
467,337 + LRK54_RS02175 0.11 -2.5
467,338 - LRK54_RS02175 0.11 -1.9
467,338 - LRK54_RS02175 0.11 +0.7
467,338 - LRK54_RS02175 0.11 -0.5
467,338 - LRK54_RS02175 0.11 -2.8
467,400 + LRK54_RS02175 0.12 -0.1
467,400 + LRK54_RS02175 0.12 -0.3
467,400 + LRK54_RS02175 0.12 -1.6
467,401 - LRK54_RS02175 0.12 -1.1
467,401 - LRK54_RS02175 0.12 -0.3
467,409 + LRK54_RS02175 0.13 -0.9
467,409 + LRK54_RS02175 0.13 -0.1
467,410 - LRK54_RS02175 0.13 -0.9
467,412 - LRK54_RS02175 0.13 -0.6
467,419 - LRK54_RS02175 0.13 -1.3
467,679 + LRK54_RS02175 0.21 -1.3
467,679 + LRK54_RS02175 0.21 -0.9
467,679 + LRK54_RS02175 0.21 -1.3
467,680 - LRK54_RS02175 0.21 +0.7
467,680 - LRK54_RS02175 0.21 -0.3
467,680 - LRK54_RS02175 0.21 -0.3
467,712 + LRK54_RS02175 0.22 -0.3
467,712 + LRK54_RS02175 0.22 -0.9
467,713 - LRK54_RS02175 0.22 +0.1
467,766 + LRK54_RS02175 0.23 -2.9
467,766 + LRK54_RS02175 0.23 -1.3
467,766 + LRK54_RS02175 0.23 +0.1
467,766 + LRK54_RS02175 0.23 -0.9
467,766 + LRK54_RS02175 0.23 +0.7
467,766 + LRK54_RS02175 0.23 -0.9
467,766 + LRK54_RS02175 0.23 +0.7
467,766 + LRK54_RS02175 0.23 -1.9
467,766 + LRK54_RS02175 0.23 +0.7
467,766 + LRK54_RS02175 0.23 -0.2
467,766 + LRK54_RS02175 0.23 +0.7
467,766 + LRK54_RS02175 0.23 +1.1
467,767 - LRK54_RS02175 0.23 -0.5
467,767 - LRK54_RS02175 0.23 +0.1
467,769 + LRK54_RS02175 0.23 +0.7
467,770 - LRK54_RS02175 0.23 -1.8
467,770 - LRK54_RS02175 0.23 -0.3
468,154 - LRK54_RS02175 0.34 -1.4
468,154 - LRK54_RS02175 0.34 -1.6
468,162 + LRK54_RS02175 0.35 -0.9
468,162 + LRK54_RS02175 0.35 -1.3
468,163 - LRK54_RS02175 0.35 -2.8
468,163 - LRK54_RS02175 0.35 -0.6
468,163 - LRK54_RS02175 0.35 +0.7
468,163 - LRK54_RS02175 0.35 -2.3
468,507 + LRK54_RS02175 0.45 -0.3
468,507 + LRK54_RS02175 0.45 -1.9
468,507 + LRK54_RS02175 0.45 -1.5
468,507 + LRK54_RS02175 0.45 -0.7
468,507 + LRK54_RS02175 0.45 -0.9
468,507 + LRK54_RS02175 0.45 -1.9
468,507 + LRK54_RS02175 0.45 -0.6
468,507 + LRK54_RS02175 0.45 -0.9
468,507 + LRK54_RS02175 0.45 +0.7
468,508 - LRK54_RS02175 0.45 -1.8
468,508 - LRK54_RS02175 0.45 -0.9
468,508 - LRK54_RS02175 0.45 +1.3
468,508 - LRK54_RS02175 0.45 +0.1
468,508 - LRK54_RS02175 0.45 +0.7
468,508 - LRK54_RS02175 0.45 -1.2
468,508 - LRK54_RS02175 0.45 +0.7
469,068 + LRK54_RS02175 0.61 -1.3
469,069 - LRK54_RS02175 0.61 -1.5
469,119 + LRK54_RS02175 0.62 -0.9
469,119 + LRK54_RS02175 0.62 -1.1
469,119 + LRK54_RS02175 0.62 +0.7
469,119 + LRK54_RS02175 0.62 -0.3
469,119 + LRK54_RS02175 0.62 -1.5
469,119 + LRK54_RS02175 0.62 -2.5
469,119 + LRK54_RS02175 0.62 -1.3
469,120 - LRK54_RS02175 0.62 -2.1
469,120 - LRK54_RS02175 0.62 -2.1
469,120 - LRK54_RS02175 0.62 -1.6
469,120 - LRK54_RS02175 0.62 -0.3
469,120 - LRK54_RS02175 0.62 -1.8
469,120 - LRK54_RS02175 0.62 -1.3
469,120 - LRK54_RS02175 0.62 -1.9
469,278 + LRK54_RS02175 0.67 -0.9
469,278 + LRK54_RS02175 0.67 +0.1
469,279 - LRK54_RS02175 0.67 -2.1
469,279 - LRK54_RS02175 0.67 +0.7
469,279 - LRK54_RS02175 0.67 -2.8
469,281 + LRK54_RS02175 0.67 +1.1
469,281 + LRK54_RS02175 0.67 -2.1
469,281 + LRK54_RS02175 0.67 -0.9
469,281 + LRK54_RS02175 0.67 -0.0
469,281 + LRK54_RS02175 0.67 -1.5
469,282 - LRK54_RS02175 0.67 +0.1
469,282 - LRK54_RS02175 0.67 -0.0
469,332 + LRK54_RS02175 0.69 -1.3
469,332 + LRK54_RS02175 0.69 -0.3
469,837 + LRK54_RS02175 0.83 +0.7
469,837 + LRK54_RS02175 0.83 -1.3
469,838 - LRK54_RS02175 0.83 -1.3
469,920 + LRK54_RS02175 0.86 +0.7
469,920 + LRK54_RS02175 0.86 -0.1
469,920 + LRK54_RS02175 0.86 -1.0
469,920 + LRK54_RS02175 0.86 -1.3
469,920 + LRK54_RS02175 0.86 +0.3
469,920 + LRK54_RS02175 0.86 +0.7
469,920 + LRK54_RS02175 0.86 -1.3
469,920 + LRK54_RS02175 0.86 -1.9
469,920 + LRK54_RS02175 0.86 -0.9
469,921 - LRK54_RS02175 0.86 -0.5
469,921 - LRK54_RS02175 0.86 -1.6
470,254 - -1.3
470,254 - -0.9
470,522 + -0.3
470,522 + -1.6
470,522 + -1.6
470,522 + -1.6
470,522 + -0.3
470,522 + -0.3
470,522 + -1.9
470,523 - +0.7
470,523 - -0.3
470,523 - -0.3
470,523 - +1.3
470,556 + -0.3
470,557 - -1.3
470,924 + LRK54_RS02180 0.14 +0.7
470,925 - LRK54_RS02180 0.14 -0.9
470,925 - LRK54_RS02180 0.14 -0.9
471,134 + LRK54_RS02180 0.20 -1.6
471,134 + LRK54_RS02180 0.20 -2.8
471,134 + LRK54_RS02180 0.20 -2.1
471,134 + LRK54_RS02180 0.20 -3.0
471,134 + LRK54_RS02180 0.20 +0.5
471,135 - LRK54_RS02180 0.20 +0.1
471,135 - LRK54_RS02180 0.20 -1.5
471,252 + LRK54_RS02180 0.23 -2.5

Or see this region's nucleotide sequence