Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS00680

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
145,428	+		LRK54_RS00675	0.56	-1.3
145,428	+		LRK54_RS00675	0.56	-2.1
145,428	+		LRK54_RS00675	0.56	-1.6
145,428	+		LRK54_RS00675	0.56	-2.1
145,428	+		LRK54_RS00675	0.56	-1.1
145,428	+		LRK54_RS00675	0.56	-0.9
145,429	-		LRK54_RS00675	0.56	+1.0
145,429	-		LRK54_RS00675	0.56	-1.6
145,429	-		LRK54_RS00675	0.56	-0.0
145,429	-		LRK54_RS00675	0.56	-0.0
145,429	-		LRK54_RS00675	0.56	+1.1
145,429	-		LRK54_RS00675	0.56	-2.1
145,429	-		LRK54_RS00675	0.56	-1.6
145,429	-		LRK54_RS00675	0.56	-0.7
145,429	-		LRK54_RS00675	0.56	-1.6
145,429	-		LRK54_RS00675	0.56	-2.5
145,587	+		LRK54_RS00675	0.67	-1.6
145,587	+		LRK54_RS00675	0.67	-0.3
145,587	+		LRK54_RS00675	0.67	-2.8
145,587	+		LRK54_RS00675	0.67	-1.6
145,587	+		LRK54_RS00675	0.67	-2.0
145,588	-		LRK54_RS00675	0.67	-1.3
145,588	-		LRK54_RS00675	0.67	+0.7
145,620	+		LRK54_RS00675	0.69	-0.3
145,620	+		LRK54_RS00675	0.69	-2.6
145,628	+		LRK54_RS00675	0.70	-1.3
145,629	-		LRK54_RS00675	0.70	+0.4
145,629	-		LRK54_RS00675	0.70	-2.5
145,629	-		LRK54_RS00675	0.70	-0.3
145,638	-		LRK54_RS00675	0.71	-0.3
145,638	-		LRK54_RS00675	0.71	-1.6
145,683	+		LRK54_RS00675	0.74	+0.7
145,683	+		LRK54_RS00675	0.74	+0.7
145,684	-		LRK54_RS00675	0.74	-0.9
145,684	-		LRK54_RS00675	0.74	+0.7
145,944	+				-2.1
145,944	+				-0.6
145,944	+				-1.9
145,944	+				-0.9
145,944	+				-0.3
145,944	+				+0.3
145,944	+				+0.7
145,944	+				-1.1
145,944	+				-2.5
145,945	-				-2.8
145,945	-				-1.3
145,945	-				-0.3
145,945	-				-1.5
145,945	-				-0.6
145,945	-				+0.7
145,959	+				-2.1
145,960	-				-2.3
145,960	-				-2.9
145,960	-				+0.1
145,983	+				-1.9
145,983	+				-1.6
145,983	+				-2.1
145,983	+				-0.3
145,984	-				-0.3
145,984	-				-2.1
145,984	-				+0.7
145,984	-				+0.7
145,995	+				-1.3
145,995	+				-2.1
145,995	+				-1.3
145,996	-				-0.3
145,996	-				-1.5
146,099	-				+0.7
146,106	+				-1.0
146,106	+				+0.1
146,106	+				-1.2
146,107	-				-0.5
146,107	-				+2.7
146,107	-				-0.8
146,186	+				+0.4
146,186	+				-0.3
146,186	+				+0.3
146,186	+				+0.2
146,186	+				-2.6
146,186	+				-2.1
146,186	+				-0.1
146,186	+				-0.9
146,186	+				-0.5
146,186	+				-1.1
146,186	+				-2.8
146,186	+				-0.3
146,186	+				-1.1
146,186	+				-1.8
146,186	+				-2.9
146,186	+				-0.5
146,186	+				-0.1
146,187	-				-0.3
146,187	-				+0.7
146,187	-				-2.3
146,187	-				-1.0
146,187	-				-1.2
146,187	-				-1.4
146,187	-				-0.6
146,187	-				-1.3
146,187	-				-0.6
146,187	-				-2.3
146,187	-				-0.3
146,187	-				+0.1
146,187	-				-1.8
146,187	-				-2.3
146,187	-				-0.9
146,187	-				-1.3
146,187	-				-2.9
146,187	-				-2.7
146,187	-				-2.1
146,386	+				-1.3
146,386	+				-2.3
146,386	+				-0.3
146,387	-				-1.2
146,387	-				-1.5
146,470	+		LRK54_RS00680	0.18	-2.8
146,470	+		LRK54_RS00680	0.18	-2.5
146,470	+		LRK54_RS00680	0.18	-1.6
146,470	+		LRK54_RS00680	0.18	-0.3
146,470	+		LRK54_RS00680	0.18	-2.9
146,470	+		LRK54_RS00680	0.18	-3.9
146,470	+		LRK54_RS00680	0.18	-1.6
146,470	+		LRK54_RS00680	0.18	-2.5
146,470	+		LRK54_RS00680	0.18	-0.9
146,470	+		LRK54_RS00680	0.18	-2.3
146,470	+		LRK54_RS00680	0.18	-4.9
146,470	+		LRK54_RS00680	0.18	-2.5
146,470	+		LRK54_RS00680	0.18	-3.8
146,470	+		LRK54_RS00680	0.18	-0.3
146,470	+		LRK54_RS00680	0.18	-1.3
146,471	-		LRK54_RS00680	0.18	+0.7
146,471	-		LRK54_RS00680	0.18	-1.6
146,471	-		LRK54_RS00680	0.18	-3.6
146,471	-		LRK54_RS00680	0.18	-2.9
146,471	-		LRK54_RS00680	0.18	-1.3
146,471	-		LRK54_RS00680	0.18	-0.9
146,471	-		LRK54_RS00680	0.18	-1.6
146,471	-		LRK54_RS00680	0.18	-0.3
146,471	-		LRK54_RS00680	0.18	-0.3
146,471	-		LRK54_RS00680	0.18	-3.6
146,850	+		LRK54_RS00680	0.73	-0.9
146,850	+		LRK54_RS00680	0.73	-2.9
146,850	+		LRK54_RS00680	0.73	-2.1
146,850	+		LRK54_RS00680	0.73	-2.3
146,850	+		LRK54_RS00680	0.73	-2.3
146,850	+		LRK54_RS00680	0.73	-1.6
146,850	+		LRK54_RS00680	0.73	-1.3
146,850	+		LRK54_RS00680	0.73	-2.1
146,850	+		LRK54_RS00680	0.73	-2.1
146,850	+		LRK54_RS00680	0.73	+0.7
146,850	+		LRK54_RS00680	0.73	-2.5
146,850	+		LRK54_RS00680	0.73	-0.9
146,850	+		LRK54_RS00680	0.73	-1.6
146,850	+		LRK54_RS00680	0.73	-1.3
146,850	+		LRK54_RS00680	0.73	-2.5
146,850	+		LRK54_RS00680	0.73	-1.6
146,850	+		LRK54_RS00680	0.73	+0.7
146,850	+		LRK54_RS00680	0.73	-0.3
146,850	+		LRK54_RS00680	0.73	-1.3
146,850	+		LRK54_RS00680	0.73	-2.8
146,850	+		LRK54_RS00680	0.73	-0.3
146,850	+		LRK54_RS00680	0.73	-1.9
146,850	+		LRK54_RS00680	0.73	-0.6
146,850	+		LRK54_RS00680	0.73	-1.3
146,850	+		LRK54_RS00680	0.73	-0.9
146,850	+		LRK54_RS00680	0.73	-0.3
146,850	+		LRK54_RS00680	0.73	-1.3
146,850	+		LRK54_RS00680	0.73	-3.1
146,850	+		LRK54_RS00680	0.73	-0.9
146,850	+		LRK54_RS00680	0.73	-2.6
146,850	+		LRK54_RS00680	0.73	-2.5
146,850	+		LRK54_RS00680	0.73	-0.9
146,850	+		LRK54_RS00680	0.73	-1.3
146,850	+		LRK54_RS00680	0.73	-1.6
146,850	+		LRK54_RS00680	0.73	-2.5
146,850	+		LRK54_RS00680	0.73	-3.0
146,850	+		LRK54_RS00680	0.73	-2.3
146,850	+		LRK54_RS00680	0.73	-2.1
146,851	-		LRK54_RS00680	0.73	-2.5
146,851	-		LRK54_RS00680	0.73	-0.3
146,851	-		LRK54_RS00680	0.73	-2.1
146,851	-		LRK54_RS00680	0.73	-1.9
146,851	-		LRK54_RS00680	0.73	-1.3
146,851	-		LRK54_RS00680	0.73	-0.3
146,851	-		LRK54_RS00680	0.73	-1.9
146,851	-		LRK54_RS00680	0.73	-0.3
146,851	-		LRK54_RS00680	0.73	-0.3
146,851	-		LRK54_RS00680	0.73	-0.3
146,851	-		LRK54_RS00680	0.73	-1.9
146,851	-		LRK54_RS00680	0.73	-3.3
146,851	-		LRK54_RS00680	0.73	-0.9
146,851	-		LRK54_RS00680	0.73	-1.9
146,851	-		LRK54_RS00680	0.73	-1.6
146,851	-		LRK54_RS00680	0.73	-1.3
146,851	-		LRK54_RS00680	0.73	+0.7
146,851	-		LRK54_RS00680	0.73	-0.3
146,851	-		LRK54_RS00680	0.73	-1.3
146,851	-		LRK54_RS00680	0.73	-1.6
146,851	-		LRK54_RS00680	0.73	-0.3
146,851	-		LRK54_RS00680	0.73	+0.7
146,851	-		LRK54_RS00680	0.73	-0.6
146,851	-		LRK54_RS00680	0.73	-2.5
146,946	+		LRK54_RS00680	0.87	+0.7
146,946	+		LRK54_RS00680	0.87	-0.3
146,946	+		LRK54_RS00680	0.87	-0.5
146,946	+		LRK54_RS00680	0.87	+0.7
146,946	+		LRK54_RS00680	0.87	-0.6
146,946	+		LRK54_RS00680	0.87	-1.3
146,947	-		LRK54_RS00680	0.87	-0.2
146,947	-		LRK54_RS00680	0.87	+0.1
146,947	-		LRK54_RS00680	0.87	-2.3
146,947	-		LRK54_RS00680	0.87	-0.8
146,947	-		LRK54_RS00680	0.87	-0.9
146,947	-		LRK54_RS00680	0.87	-1.2
146,947	-		LRK54_RS00680	0.87	+0.5
147,094	+				-0.0
147,094	+				-2.1
147,094	+				-0.9
147,094	+				+0.3
147,094	+				+0.7
147,094	+				+1.7
147,094	+				+0.1
147,094	+				+0.1
147,094	+				+0.3
147,094	+				-0.2
147,094	+				-1.6
147,094	+				-0.5
147,094	+				+0.2
147,094	+				+0.1
147,094	+				+0.7
147,094	+				-1.3
147,094	+				-1.9
147,094	+				+0.8
147,094	+				+0.4
147,094	+				-1.3
147,094	+				+0.7
147,094	+				+0.8
147,094	+				+0.8
147,094	+				+0.2
147,094	+				+0.5
147,095	-				+0.7
147,095	-				-1.6
147,095	-				+1.5
147,095	-				-0.3
147,095	-				+0.3
147,095	-				-0.6
147,095	-				+0.6
147,095	-				-0.2
147,095	-				+1.0
147,095	-				-0.3
147,095	-				-0.5
147,095	-				+0.2
147,095	-				-0.4
147,095	-				+0.5
147,095	-				-1.2
147,095	-				+0.7
147,095	-				+0.3
147,095	-				-0.4
147,095	-				+0.3
147,095	-				+1.5
147,095	-				-0.9
147,095	-				-0.3
147,095	-				-0.2
147,095	-				+0.4
147,095	-				+0.3
147,095	-				+1.5
147,095	-				+0.1
147,095	-				+0.2
147,095	-				+0.7
147,095	-				-0.3
147,134	+				+0.2
147,135	-				+1.2
147,193	+		LRK54_RS00685	0.21	-0.3
147,194	-		LRK54_RS00685	0.21	-0.2
147,194	-		LRK54_RS00685	0.21	-0.5
147,194	-		LRK54_RS00685	0.21	-2.3
147,399	+		LRK54_RS00685	0.64	+0.3
147,399	+		LRK54_RS00685	0.64	-0.5
147,399	+		LRK54_RS00685	0.64	+0.0
147,399	+		LRK54_RS00685	0.64	+2.3
147,399	+		LRK54_RS00685	0.64	+0.1
147,399	+		LRK54_RS00685	0.64	+1.7
147,399	+		LRK54_RS00685	0.64	-1.5
147,399	+		LRK54_RS00685	0.64	-0.6
147,400	-		LRK54_RS00685	0.64	+2.3
147,400	-		LRK54_RS00685	0.64	+0.1
147,400	-		LRK54_RS00685	0.64	+0.4
147,400	-		LRK54_RS00685	0.64	-1.3
147,400	-		LRK54_RS00685	0.64	+0.7
147,400	-		LRK54_RS00685	0.64	-0.9
147,400	-		LRK54_RS00685	0.64	-0.3
147,400	-		LRK54_RS00685	0.64	+0.1
147,400	-		LRK54_RS00685	0.64	+0.7
147,404	+		LRK54_RS00685	0.65	+2.6
147,405	-		LRK54_RS00685	0.65	-1.2
147,405	-		LRK54_RS00685	0.65	+0.0
147,439	+		LRK54_RS00685	0.72	+0.1
147,439	+		LRK54_RS00685	0.72	+0.2
147,439	+		LRK54_RS00685	0.72	+1.5
147,439	+		LRK54_RS00685	0.72	-1.3
147,439	+		LRK54_RS00685	0.72	-0.5
147,439	+		LRK54_RS00685	0.72	+1.3
147,439	+		LRK54_RS00685	0.72	+0.5
147,439	+		LRK54_RS00685	0.72	+1.7
147,439	+		LRK54_RS00685	0.72	+2.3
147,439	+		LRK54_RS00685	0.72	+0.1
147,439	+		LRK54_RS00685	0.72	-1.2
147,439	+		LRK54_RS00685	0.72	+0.4
147,439	+		LRK54_RS00685	0.72	-0.3
147,439	+		LRK54_RS00685	0.72	+0.4
147,440	-		LRK54_RS00685	0.72	+1.0
147,440	-		LRK54_RS00685	0.72	+0.6
147,440	-		LRK54_RS00685	0.72	+0.2
147,440	-		LRK54_RS00685	0.72	+1.7
147,440	-		LRK54_RS00685	0.72	+0.7
147,440	-		LRK54_RS00685	0.72	+0.3
147,440	-		LRK54_RS00685	0.72	-0.1
147,440	-		LRK54_RS00685	0.72	-2.0
147,440	-		LRK54_RS00685	0.72	+0.5
147,508	+		LRK54_RS00685	0.86	+1.0
147,508	+		LRK54_RS00685	0.86	-0.3
147,508	+		LRK54_RS00685	0.86	+1.7
147,508	+		LRK54_RS00685	0.86	+1.0
147,508	+		LRK54_RS00685	0.86	-0.6
147,508	+		LRK54_RS00685	0.86	+0.3
147,508	+		LRK54_RS00685	0.86	+0.4
147,508	+		LRK54_RS00685	0.86	+1.5
147,508	+		LRK54_RS00685	0.86	+0.7
147,509	-		LRK54_RS00685	0.86	+0.3
147,509	-		LRK54_RS00685	0.86	-0.3
147,509	-		LRK54_RS00685	0.86	+0.2
147,509	-		LRK54_RS00685	0.86	+0.5
147,509	-		LRK54_RS00685	0.86	-0.1
147,509	-		LRK54_RS00685	0.86	+0.7
147,509	-		LRK54_RS00685	0.86	+1.7
147,630	+				-2.2
147,630	+				-0.3
147,673	+				-0.9
147,673	+				-0.2
147,673	+				+0.7
147,673	+				-0.4
147,674	-				-1.3
147,674	-				-0.2
147,799	+				-0.1
147,799	+				-2.4
147,799	+				-1.3
147,799	+				-0.7
147,799	+				+0.5
147,799	+				-0.8
147,799	+				+0.2
147,799	+				+0.6
147,799	+				-0.6
147,799	+				-0.6
147,799	+				+0.7
147,799	+				-0.6
147,799	+				-1.2
147,799	+				+0.2
147,799	+				-0.9
147,799	+				-2.1
147,799	+				-0.4
147,799	+				-0.7
147,799	+				+0.1
147,799	+				-0.0
147,799	+				-3.2
147,799	+				+0.1
147,799	+				-0.0
147,799	+				+1.7
147,799	+				-1.1
147,799	+				+0.9
147,799	+				-0.9
147,799	+				-0.1
147,799	+				+0.1
147,799	+				+0.6
147,799	+				+1.5
147,799	+				+0.5
147,799	+				-0.6
147,799	+				-0.6
147,799	+				-0.3
147,799	+				-0.4
147,799	+				-1.1
147,799	+				-1.1
147,799	+				+0.7
147,799	+				-1.3
147,799	+				+0.5
147,799	+				-0.5
147,799	+				+0.4
147,799	+				-1.5
147,799	+				-0.4
147,799	+				-0.0
147,799	+				+1.4
147,799	+				-0.3
147,800	-				+1.0
147,800	-				+1.0
147,800	-				-0.5
147,800	-				-0.0
147,800	-				-1.3
147,800	-				-0.4
147,800	-				-1.0
147,800	-				+0.1
147,800	-				+1.1
147,800	-				+0.3
147,800	-				-0.1
147,800	-				-0.1
147,800	-				+1.0
147,800	-				+0.1
147,800	-				-0.2
147,800	-				+0.5
147,800	-				-2.0
147,800	-				+0.2
147,800	-				+1.1
147,800	-				+1.0
147,800	-				+0.7
147,800	-				-0.0
147,800	-				+0.4
147,800	-				-0.3
147,800	-				+0.7
147,800	-				+1.3
147,800	-				+2.3
147,800	-				+0.5
147,800	-				+0.8
147,800	-				+1.1
147,800	-				-0.8
147,800	-				+0.2
147,800	-				+0.2
147,800	-				-0.3
147,800	-				-1.3
147,800	-				+0.2
147,800	-				-0.9
147,800	-				+1.7
147,800	-				+0.4
147,800	-				+0.1
147,800	-				+0.5
147,800	-				+1.4
147,800	-				+1.3
147,800	-				+0.8
147,800	-				-0.0
147,800	-				+1.9
147,800	-				+0.1
147,800	-				-0.3
147,808	+				-0.6
147,820	+				-0.8
147,820	+				-0.0
147,820	+				+1.3
147,820	+				-1.5
147,821	-				-1.4
147,821	-				-1.5
147,821	-				-0.9
147,821	-				+0.7
147,821	-				+0.8
147,821	-				-0.7
147,939	-				+0.7
147,939	-				+0.0
147,978	+				-0.3
147,978	+				-1.6
147,978	+				-1.2
147,978	+				-1.8
147,978	+				-1.7
147,978	+				-1.1
147,978	+				-1.3
147,978	+				-3.6
147,978	+				-2.0
147,979	-				-1.9
147,979	-				-0.4
147,979	-				-2.1
147,979	-				-1.6
147,979	-				+0.1
147,979	-				-2.1
147,979	-				-1.6
147,979	-				-0.3
147,979	-				-2.3
147,979	-				-1.3
147,979	-				-0.3
147,979	-				-0.8
147,979	-				-1.9
147,979	-				-1.6
148,002	+				-1.3
148,002	+				+0.1
148,002	+				-0.3
148,002	+				-1.3
148,002	+				+2.3
148,002	+				-2.3
148,002	+				-1.5
148,002	+				-2.5
148,002	+				-2.1
148,002	+				-1.0
148,003	-				-0.9
148,003	-				-0.6
148,003	-				-1.5
148,003	-				-2.8
148,003	-				-1.6
148,003	-				+0.7
148,003	-				-1.6
148,003	-				-2.3
148,003	-				-3.7