Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS00670

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
142,215	+				+1.7
142,216	-				+0.4
142,216	-				-1.0
142,378	+		LRK54_RS00665	0.21	-0.8
142,378	+		LRK54_RS00665	0.21	+0.2
142,379	-		LRK54_RS00665	0.21	+1.3
142,379	-		LRK54_RS00665	0.21	+3.5
142,403	+		LRK54_RS00665	0.24	-0.5
142,403	+		LRK54_RS00665	0.24	+0.9
142,403	+		LRK54_RS00665	0.24	-0.2
142,403	+		LRK54_RS00665	0.24	+0.9
142,403	+		LRK54_RS00665	0.24	+1.1
142,404	-		LRK54_RS00665	0.24	-0.8
142,404	-		LRK54_RS00665	0.24	-0.3
142,404	-		LRK54_RS00665	0.24	-0.3
142,404	-		LRK54_RS00665	0.24	-1.3
142,404	-		LRK54_RS00665	0.24	+0.3
142,545	+		LRK54_RS00665	0.42	+0.0
142,545	+		LRK54_RS00665	0.42	-0.4
142,545	+		LRK54_RS00665	0.42	+1.0
142,545	+		LRK54_RS00665	0.42	+0.9
142,545	+		LRK54_RS00665	0.42	+0.5
142,545	+		LRK54_RS00665	0.42	+0.1
142,545	+		LRK54_RS00665	0.42	+0.4
142,545	+		LRK54_RS00665	0.42	-0.1
142,545	+		LRK54_RS00665	0.42	+0.5
142,545	+		LRK54_RS00665	0.42	+0.5
142,545	+		LRK54_RS00665	0.42	+0.0
142,545	+		LRK54_RS00665	0.42	+0.2
142,545	+		LRK54_RS00665	0.42	-0.4
142,545	+		LRK54_RS00665	0.42	+0.4
142,545	+		LRK54_RS00665	0.42	-0.6
142,545	+		LRK54_RS00665	0.42	-0.9
142,546	-		LRK54_RS00665	0.42	-0.5
142,546	-		LRK54_RS00665	0.42	-0.4
142,546	-		LRK54_RS00665	0.42	+0.5
142,546	-		LRK54_RS00665	0.42	-1.0
142,546	-		LRK54_RS00665	0.42	-0.2
142,546	-		LRK54_RS00665	0.42	+0.8
142,546	-		LRK54_RS00665	0.42	+0.1
142,546	-		LRK54_RS00665	0.42	-0.1
142,546	-		LRK54_RS00665	0.42	+0.0
142,546	-		LRK54_RS00665	0.42	-0.2
142,546	-		LRK54_RS00665	0.42	+0.5
142,546	-		LRK54_RS00665	0.42	-2.8
142,546	-		LRK54_RS00665	0.42	+0.3
142,546	-		LRK54_RS00665	0.42	+0.5
142,546	-		LRK54_RS00665	0.42	-0.3
142,546	-		LRK54_RS00665	0.42	-0.7
142,689	+		LRK54_RS00665	0.60	+0.0
142,689	+		LRK54_RS00665	0.60	-0.9
142,689	+		LRK54_RS00665	0.60	-0.4
142,689	+		LRK54_RS00665	0.60	-0.1
142,689	+		LRK54_RS00665	0.60	+1.9
142,689	+		LRK54_RS00665	0.60	-0.7
142,689	+		LRK54_RS00665	0.60	-0.0
142,689	+		LRK54_RS00665	0.60	-0.4
142,689	+		LRK54_RS00665	0.60	+0.9
142,689	+		LRK54_RS00665	0.60	+1.7
142,690	-		LRK54_RS00665	0.60	-0.9
142,690	-		LRK54_RS00665	0.60	+0.4
142,690	-		LRK54_RS00665	0.60	-0.2
142,690	-		LRK54_RS00665	0.60	-0.9
142,690	-		LRK54_RS00665	0.60	+0.7
142,690	-		LRK54_RS00665	0.60	-0.9
142,690	-		LRK54_RS00665	0.60	-0.5
142,690	-		LRK54_RS00665	0.60	-0.4
142,690	-		LRK54_RS00665	0.60	+0.2
142,690	-		LRK54_RS00665	0.60	+0.5
142,758	+		LRK54_RS00665	0.69	-1.3
142,758	+		LRK54_RS00665	0.69	-0.6
142,758	+				+2.3
142,758	+		LRK54_RS00665	0.69	+0.1
142,758	+		LRK54_RS00665	0.69	-0.8
142,758	+		LRK54_RS00665	0.69	-0.4
142,758	+		LRK54_RS00665	0.69	+0.3
142,758	+		LRK54_RS00665	0.69	-0.7
142,758	+		LRK54_RS00665	0.69	+0.1
142,758	+		LRK54_RS00665	0.69	-0.1
142,758	+		LRK54_RS00665	0.69	+0.1
142,758	+		LRK54_RS00665	0.69	+0.3
142,758	+		LRK54_RS00665	0.69	-0.5
142,758	+		LRK54_RS00665	0.69	+1.1
142,758	+		LRK54_RS00665	0.69	+0.7
142,758	+		LRK54_RS00665	0.69	+1.6
142,758	+		LRK54_RS00665	0.69	-0.9
142,758	+		LRK54_RS00665	0.69	+0.5
142,758	+		LRK54_RS00665	0.69	-0.7
142,758	+		LRK54_RS00665	0.69	+2.5
142,758	+		LRK54_RS00665	0.69	+0.0
142,758	+		LRK54_RS00665	0.69	+0.8
142,758	+		LRK54_RS00665	0.69	+0.7
142,758	+		LRK54_RS00665	0.69	-0.8
142,758	+		LRK54_RS00665	0.69	+0.5
142,758	+		LRK54_RS00665	0.69	+0.5
142,758	+		LRK54_RS00665	0.69	+0.4
142,758	+		LRK54_RS00665	0.69	+0.0
142,758	+		LRK54_RS00665	0.69	+0.3
142,758	+		LRK54_RS00665	0.69	-0.9
142,758	+		LRK54_RS00665	0.69	-0.9
142,758	+		LRK54_RS00665	0.69	+0.3
142,758	+		LRK54_RS00665	0.69	+0.6
142,759	-		LRK54_RS00665	0.69	-0.2
142,759	-		LRK54_RS00665	0.69	-0.9
142,759	-		LRK54_RS00665	0.69	-0.9
142,759	-		LRK54_RS00665	0.69	-0.4
142,759	-		LRK54_RS00665	0.69	-0.0
142,759	-		LRK54_RS00665	0.69	-0.2
142,759	-		LRK54_RS00665	0.69	-0.7
142,759	-		LRK54_RS00665	0.69	+0.4
142,759	-		LRK54_RS00665	0.69	-0.3
142,759	-		LRK54_RS00665	0.69	-0.1
142,759	-		LRK54_RS00665	0.69	-0.1
142,759	-		LRK54_RS00665	0.69	-1.1
142,759	-		LRK54_RS00665	0.69	-0.3
142,759	-		LRK54_RS00665	0.69	+0.7
142,759	-		LRK54_RS00665	0.69	+0.2
142,759	-		LRK54_RS00665	0.69	+0.4
142,759	-		LRK54_RS00665	0.69	+0.3
142,759	-		LRK54_RS00665	0.69	+2.1
142,759	-		LRK54_RS00665	0.69	-0.1
142,759	-		LRK54_RS00665	0.69	-2.3
142,759	-		LRK54_RS00665	0.69	-0.4
142,759	-		LRK54_RS00665	0.69	-0.4
142,759	-		LRK54_RS00665	0.69	+0.7
142,759	-		LRK54_RS00665	0.69	-0.9
142,759	-		LRK54_RS00665	0.69	+1.2
142,759	-		LRK54_RS00665	0.69	-1.3
142,759	-		LRK54_RS00665	0.69	-0.8
142,759	-		LRK54_RS00665	0.69	+0.7
142,759	-		LRK54_RS00665	0.69	+0.5
142,759	-		LRK54_RS00665	0.69	-1.8
142,759	-		LRK54_RS00665	0.69	+0.3
142,764	+		LRK54_RS00665	0.70	+0.7
142,764	+		LRK54_RS00665	0.70	+0.2
142,764	+		LRK54_RS00665	0.70	+0.8
142,764	+		LRK54_RS00665	0.70	-1.1
142,764	+		LRK54_RS00665	0.70	-0.6
142,764	+		LRK54_RS00665	0.70	-0.8
142,764	+		LRK54_RS00665	0.70	-1.1
142,764	+		LRK54_RS00665	0.70	-0.3
142,764	+		LRK54_RS00665	0.70	+0.4
142,764	+		LRK54_RS00665	0.70	+0.4
142,764	+		LRK54_RS00665	0.70	-0.1
142,764	+		LRK54_RS00665	0.70	-0.3
142,764	+		LRK54_RS00665	0.70	-0.7
142,764	+		LRK54_RS00665	0.70	+0.3
142,764	+		LRK54_RS00665	0.70	+0.7
142,764	+		LRK54_RS00665	0.70	-0.6
142,764	+		LRK54_RS00665	0.70	+0.3
142,765	-		LRK54_RS00665	0.70	-0.9
142,765	-		LRK54_RS00665	0.70	+0.6
142,765	-		LRK54_RS00665	0.70	-0.5
142,765	-		LRK54_RS00665	0.70	-0.2
142,765	-		LRK54_RS00665	0.70	+0.9
142,765	-		LRK54_RS00665	0.70	-0.3
142,765	-		LRK54_RS00665	0.70	-0.1
142,765	-		LRK54_RS00665	0.70	-1.3
142,765	-		LRK54_RS00665	0.70	+1.1
142,765	-		LRK54_RS00665	0.70	-1.1
142,765	-		LRK54_RS00665	0.70	-0.3
142,765	-		LRK54_RS00665	0.70	-1.0
142,765	-		LRK54_RS00665	0.70	-0.9
142,765	-		LRK54_RS00665	0.70	-1.3
142,765	-		LRK54_RS00665	0.70	-0.9
142,765	-		LRK54_RS00665	0.70	-0.6
142,765	-		LRK54_RS00665	0.70	-1.1
142,765	-		LRK54_RS00665	0.70	-0.7
142,765	-		LRK54_RS00665	0.70	+0.9
142,765	-		LRK54_RS00665	0.70	-0.7
142,765	-		LRK54_RS00665	0.70	-0.4
142,830	+		LRK54_RS00665	0.78	+0.3
142,830	+		LRK54_RS00665	0.78	-1.3
142,831	-		LRK54_RS00665	0.78	+0.7
143,009	-				+0.5
143,013	+				-0.9
143,013	+				+0.4
143,013	+				+0.8
143,013	+				+0.7
143,014	-				-1.1
143,014	-				-0.0
143,070	+				+0.1
143,071	-				+0.6
143,125	+				-0.3
143,125	+				-1.3
143,125	+				-1.9
143,126	-				-0.9
143,126	-				-0.6
143,126	-				-1.3
143,126	-				-0.9
143,260	+		LRK54_RS00670	0.12	-1.6
143,260	+		LRK54_RS00670	0.12	-2.6
143,260	+		LRK54_RS00670	0.12	-0.9
143,260	+		LRK54_RS00670	0.12	-2.5
143,260	+		LRK54_RS00670	0.12	-2.6
143,260	+		LRK54_RS00670	0.12	-1.9
143,260	+		LRK54_RS00670	0.12	-0.3
143,260	+		LRK54_RS00670	0.12	-0.9
143,260	+		LRK54_RS00670	0.12	+0.7
143,260	+		LRK54_RS00670	0.12	-0.3
143,261	-		LRK54_RS00670	0.12	-0.9
143,261	-		LRK54_RS00670	0.12	+0.7
143,261	-		LRK54_RS00670	0.12	+0.3
143,261	-		LRK54_RS00670	0.12	-1.6
143,261	-		LRK54_RS00670	0.12	-1.3
143,261	-		LRK54_RS00670	0.12	-0.9
143,266	+		LRK54_RS00670	0.13	+0.7
143,266	+		LRK54_RS00670	0.13	+1.7
143,266	+		LRK54_RS00670	0.13	-0.3
143,267	-		LRK54_RS00670	0.13	-1.6
143,267	-		LRK54_RS00670	0.13	-1.3
143,267	-		LRK54_RS00670	0.13	+0.7
143,267	-		LRK54_RS00670	0.13	-1.3
143,267	-		LRK54_RS00670	0.13	-2.5
143,305	+		LRK54_RS00670	0.16	-0.9
143,305	+		LRK54_RS00670	0.16	-0.9
143,305	+		LRK54_RS00670	0.16	-0.9
143,305	+		LRK54_RS00670	0.16	-1.3
143,306	-		LRK54_RS00670	0.16	-1.6
143,306	-		LRK54_RS00670	0.16	-1.6
143,333	-		LRK54_RS00670	0.19	-1.6
143,467	+		LRK54_RS00670	0.30	-1.6
143,467	+		LRK54_RS00670	0.30	-0.9
143,467	+		LRK54_RS00670	0.30	+0.7
143,468	-		LRK54_RS00670	0.31	+0.7
143,468	-		LRK54_RS00670	0.31	-1.6
143,468	-		LRK54_RS00670	0.31	+0.7
143,882	-		LRK54_RS00670	0.67	+0.7
143,882	-		LRK54_RS00670	0.67	-2.6
143,911	+		LRK54_RS00670	0.70	-0.3
143,911	+		LRK54_RS00670	0.70	-0.3
143,911	+		LRK54_RS00670	0.70	-1.3
143,912	-		LRK54_RS00670	0.70	-1.3
143,912	-		LRK54_RS00670	0.70	+0.7
143,912	-		LRK54_RS00670	0.70	-0.9
144,049	+		LRK54_RS00670	0.82	-0.3
144,050	-		LRK54_RS00670	0.82	-0.9
144,050	-		LRK54_RS00670	0.82	-1.3
144,050	-		LRK54_RS00670	0.82	-0.3
144,050	-		LRK54_RS00670	0.82	-1.6
144,050	-		LRK54_RS00670	0.82	-2.3
144,052	+		LRK54_RS00670	0.82	-0.9
144,052	+		LRK54_RS00670	0.82	+0.7
144,052	+		LRK54_RS00670	0.82	-1.6
144,052	+		LRK54_RS00670	0.82	-0.9
144,052	+		LRK54_RS00670	0.82	-0.3
144,052	+		LRK54_RS00670	0.82	-0.9
144,052	+		LRK54_RS00670	0.82	-0.9
144,052	+		LRK54_RS00670	0.82	-1.6
144,053	-		LRK54_RS00670	0.83	-0.9
144,053	-		LRK54_RS00670	0.83	+0.7
144,053	-		LRK54_RS00670	0.83	-3.0
144,053	-		LRK54_RS00670	0.83	-1.3
144,053	-		LRK54_RS00670	0.83	-0.3
144,072	-		LRK54_RS00670	0.84	-0.3
144,092	-		LRK54_RS00670	0.86	-2.5
144,092	-		LRK54_RS00670	0.86	-0.3
144,092	-		LRK54_RS00670	0.86	+0.7
144,092	-		LRK54_RS00670	0.86	-1.3
144,092	-		LRK54_RS00670	0.86	-0.3
144,094	+		LRK54_RS00670	0.86	-1.6
144,117	-		LRK54_RS00670	0.88	+0.7
144,117	-		LRK54_RS00670	0.88	-1.6
144,118	+		LRK54_RS00670	0.88	+0.7
144,118	+		LRK54_RS00670	0.88	-0.9
144,118	+		LRK54_RS00670	0.88	-0.3
144,118	+		LRK54_RS00670	0.88	-1.9
144,118	+		LRK54_RS00670	0.88	+0.7
144,118	+		LRK54_RS00670	0.88	-1.6
144,119	-		LRK54_RS00670	0.88	-0.9
144,119	-		LRK54_RS00670	0.88	-1.6
144,119	-		LRK54_RS00670	0.88	-0.9
144,119	-		LRK54_RS00670	0.88	+0.7
144,133	+		LRK54_RS00670	0.90	-0.9
144,133	+		LRK54_RS00670	0.90	-2.1
144,133	+		LRK54_RS00670	0.90	+0.7
144,134	-		LRK54_RS00670	0.90	+0.7
144,134	-		LRK54_RS00670	0.90	-0.3
144,134	-		LRK54_RS00670	0.90	-0.9
144,198	+				-0.9
144,199	-				-1.6
144,199	-				-0.3
144,199	-				+0.7
144,229	+				-1.6
144,230	-				+0.7
144,230	-				-2.1
144,239	+				-1.3
144,239	+				-1.6
144,239	+				-1.3
144,240	-				-0.9
144,265	+				-0.9
144,265	+				-1.9
144,266	-				-2.4
144,266	-				-0.3
144,266	-				-1.3
144,266	-				+0.7
144,266	-				-1.3
144,266	-				-0.9
144,266	-				-2.1
144,266	-				-1.6
144,266	-				-0.9
144,266	-				+0.5
144,266	-				-0.7
144,266	-				-0.3
144,266	-				-0.6
144,266	-				-3.1
144,268	+				-0.9
144,269	-				-1.1
144,269	-				-0.1
144,269	-				-0.3
144,292	-				-0.9
144,320	+				-1.9
144,320	+				-0.3
144,320	+				+0.7
144,320	+				-1.9
144,321	-				-1.9
144,321	-				-3.0
144,321	-				-1.6
144,321	-				-2.1
144,321	-				-1.9
144,321	-				-1.9
144,321	-				-0.3
144,321	-				-2.1
144,321	-				-2.9
144,321	-				-0.6
144,321	-				+1.7
144,321	-				-0.3
144,321	-				-0.3
144,321	-				-2.8
144,321	-				-1.9
144,321	-				-1.3
144,321	-				-0.9
144,321	-				-1.6
144,321	-				+0.7
144,321	-				-0.6
144,342	-				-1.3
144,359	+				-2.6
144,360	-				-2.1
144,360	-				-0.3
144,383	-				-1.1
144,383	-				-1.6
144,383	-				-2.1
144,417	+				-1.9
144,509	+				-0.3
144,509	+				-2.6
144,509	+				-1.3
144,509	+				-1.9
144,509	+				-2.9
144,509	+				-0.3
144,509	+				-1.6
144,509	+				+0.7
144,509	+				-2.6
144,509	+				-0.9
144,509	+				-2.8
144,509	+				-0.9
144,509	+				-3.9
144,509	+				-0.9
144,509	+				-0.3
144,509	+				-2.9
144,509	+				-0.9
144,509	+				-4.1
144,509	+				-0.3
144,509	+				-2.1
144,509	+				-2.1
144,509	+				-1.1
144,509	+				-0.9
144,509	+				-1.6
144,509	+				-0.9
144,509	+				-2.1
144,510	-				-0.9
144,510	-				+0.1
144,510	-				+0.1
144,510	-				+0.3
144,510	-				-0.9
144,510	-				+0.7
144,510	-				-0.6
144,510	-				+1.0
144,510	-				-0.4
144,510	-				+1.1
144,510	-				-2.2
144,510	-				-0.8
144,510	-				+1.7
144,510	-				-0.4
144,510	-				-2.8
144,510	-				-0.6
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144,510	-				-1.6
144,510	-				-1.3
144,510	-				+0.1
144,510	-				-0.8
144,510	-				-0.6
144,510	-				-1.5
144,510	-				+0.4
144,510	-				+0.1
144,510	-				-0.7
144,510	-				-1.1
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144,510	-				-0.3
144,510	-				-0.1
144,510	-				+0.9
144,510	-				-2.5
144,510	-				+2.3
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144,510	-				+0.9
144,510	-				-0.9
144,510	-				+0.3
144,510	-				-1.3
144,510	-				+0.5
144,510	-				+0.2
144,510	-				+1.4
144,510	-				-1.1
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144,528	+				-2.1
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144,528	+				-1.6
144,528	+				-1.3
144,528	+				-0.9
144,528	+				+1.3
144,528	+				-0.9
144,528	+				-2.3
144,528	+				-2.3
144,528	+				-3.0
144,528	+				-0.9
144,528	+				+0.7
144,528	+				-1.3
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144,529	-				+0.5
144,529	-				-0.4
144,529	-				-0.6
144,529	-				+0.0
144,529	-				+3.3
144,529	-				-0.9
144,529	-				+1.9
144,529	-				-2.2
144,529	-				-1.8
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144,529	-				-0.1
144,529	-				-0.6
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144,592	+				-0.9
144,592	+				-2.9
144,592	+				-1.3
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144,616	-				+2.0
144,616	-				-0.7
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144,882	+		LRK54_RS00675	0.18	-1.3
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144,957	-		LRK54_RS00675	0.24	-1.1
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144,969	+		LRK54_RS00675	0.24	-0.6
144,969	+		LRK54_RS00675	0.24	-1.6
144,970	-		LRK54_RS00675	0.25	-0.0
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144,970	-		LRK54_RS00675	0.25	-1.9
144,970	-		LRK54_RS00675	0.25	-2.5
144,970	-		LRK54_RS00675	0.25	-1.6
144,970	-		LRK54_RS00675	0.25	-1.3
145,017	+		LRK54_RS00675	0.28	-0.9
145,017	+		LRK54_RS00675	0.28	-1.3
145,017	+		LRK54_RS00675	0.28	-1.6
145,017	+		LRK54_RS00675	0.28	-2.9
145,017	+		LRK54_RS00675	0.28	-0.9
145,017	+		LRK54_RS00675	0.28	-1.3
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145,017	+		LRK54_RS00675	0.28	-1.3
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145,018	-		LRK54_RS00675	0.28	-2.1
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145,018	-		LRK54_RS00675	0.28	-2.1
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145,018	-		LRK54_RS00675	0.28	-0.3
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145,044	+		LRK54_RS00675	0.30	-0.3
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145,044	+		LRK54_RS00675	0.30	-0.3
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145,045	-		LRK54_RS00675	0.30	-0.7
145,045	-		LRK54_RS00675	0.30	-0.3
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145,230	+		LRK54_RS00675	0.42	-1.9
145,230	+		LRK54_RS00675	0.42	-0.3
145,230	+		LRK54_RS00675	0.42	-0.3
145,230	+		LRK54_RS00675	0.42	-2.8
145,230	+		LRK54_RS00675	0.42	-0.9
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145,231	-		LRK54_RS00675	0.42	-1.1
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145,231	-		LRK54_RS00675	0.42	-0.3
145,231	-		LRK54_RS00675	0.42	-0.0
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145,231	-		LRK54_RS00675	0.42	-1.9
145,231	-		LRK54_RS00675	0.42	-2.6
145,231	-		LRK54_RS00675	0.42	-0.9
145,231	-		LRK54_RS00675	0.42	-0.9
145,231	-		LRK54_RS00675	0.42	-2.8
145,231	-		LRK54_RS00675	0.42	-1.9
145,231	-		LRK54_RS00675	0.42	-2.3
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