Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS00560

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
115,810	+		LRK54_RS00550	0.31	-1.1
115,810	+		LRK54_RS00550	0.31	-0.1
115,810	+		LRK54_RS00550	0.31	+0.9
115,810	+		LRK54_RS00550	0.31	-0.5
115,810	+		LRK54_RS00550	0.31	+1.1
115,810	+		LRK54_RS00550	0.31	+0.2
115,810	+		LRK54_RS00550	0.31	-0.3
115,810	+		LRK54_RS00550	0.31	+3.3
115,810	+		LRK54_RS00550	0.31	+1.2
115,810	+		LRK54_RS00550	0.31	+0.1
115,810	+		LRK54_RS00550	0.31	-1.6
115,810	+		LRK54_RS00550	0.31	-1.9
115,810	+		LRK54_RS00550	0.31	+1.3
115,810	+		LRK54_RS00550	0.31	-0.3
115,810	+		LRK54_RS00550	0.31	+0.5
115,811	-		LRK54_RS00550	0.31	+0.1
115,811	-		LRK54_RS00550	0.31	+0.1
115,811	-		LRK54_RS00550	0.31	-0.4
115,811	-		LRK54_RS00550	0.31	-0.2
115,811	-		LRK54_RS00550	0.31	+0.7
115,811	-		LRK54_RS00550	0.31	-0.5
115,811	-		LRK54_RS00550	0.31	-0.9
115,811	-		LRK54_RS00550	0.31	+2.0
115,824	+		LRK54_RS00550	0.33	-0.4
115,824	+		LRK54_RS00550	0.33	+0.1
115,824	+		LRK54_RS00550	0.33	-0.3
115,824	+		LRK54_RS00550	0.33	+1.0
115,825	-		LRK54_RS00550	0.33	-0.1
115,825	-		LRK54_RS00550	0.33	+0.4
115,825	-		LRK54_RS00550	0.33	+0.0
115,833	+		LRK54_RS00550	0.34	+0.4
115,833	+		LRK54_RS00550	0.34	-0.9
115,833	+		LRK54_RS00550	0.34	+1.2
115,833	+		LRK54_RS00550	0.34	-0.3
115,833	+		LRK54_RS00550	0.34	-0.2
115,833	+		LRK54_RS00550	0.34	-1.9
115,833	+		LRK54_RS00550	0.34	+0.2
115,833	+		LRK54_RS00550	0.34	+0.2
115,834	-		LRK54_RS00550	0.34	+0.7
115,834	-		LRK54_RS00550	0.34	+1.1
115,834	-		LRK54_RS00550	0.34	+0.2
115,834	-		LRK54_RS00550	0.34	-1.4
115,834	-		LRK54_RS00550	0.34	-1.5
115,834	-		LRK54_RS00550	0.34	+0.3
115,834	-		LRK54_RS00550	0.34	+1.0
115,869	+		LRK54_RS00550	0.39	+1.5
115,870	-		LRK54_RS00550	0.39	+1.6
115,870	-		LRK54_RS00550	0.39	-0.7
115,870	-		LRK54_RS00550	0.39	-1.2
116,024	-		LRK54_RS00550	0.59	-0.0
116,042	+		LRK54_RS00550	0.61	+0.7
116,043	-		LRK54_RS00550	0.61	+0.7
116,043	-		LRK54_RS00550	0.61	+0.4
116,085	+		LRK54_RS00550	0.67	-0.1
116,085	+		LRK54_RS00550	0.67	-0.3
116,086	-		LRK54_RS00550	0.67	-1.9
116,086	-		LRK54_RS00550	0.67	-2.0
116,086	-		LRK54_RS00550	0.67	+0.1
116,086	-		LRK54_RS00550	0.67	-0.9
116,086	-		LRK54_RS00550	0.67	+1.7
116,106	+		LRK54_RS00550	0.69	+0.4
116,106	+		LRK54_RS00550	0.69	+0.1
116,106	+		LRK54_RS00550	0.69	+0.8
116,106	+		LRK54_RS00550	0.69	+1.0
116,106	+		LRK54_RS00550	0.69	-0.5
116,106	+		LRK54_RS00550	0.69	-0.2
116,106	+		LRK54_RS00550	0.69	+0.4
116,106	+		LRK54_RS00550	0.69	+0.9
116,106	+		LRK54_RS00550	0.69	+1.5
116,106	+		LRK54_RS00550	0.69	+1.1
116,106	+		LRK54_RS00550	0.69	+1.9
116,106	+		LRK54_RS00550	0.69	+1.7
116,106	+		LRK54_RS00550	0.69	+0.8
116,106	+		LRK54_RS00550	0.69	-0.0
116,106	+		LRK54_RS00550	0.69	+0.6
116,106	+		LRK54_RS00550	0.69	+2.3
116,106	+		LRK54_RS00550	0.69	-0.6
116,106	+		LRK54_RS00550	0.69	+1.3
116,106	+		LRK54_RS00550	0.69	+0.2
116,106	+		LRK54_RS00550	0.69	+0.9
116,106	+		LRK54_RS00550	0.69	+0.7
116,106	+		LRK54_RS00550	0.69	+0.4
116,106	+		LRK54_RS00550	0.69	+2.3
116,106	+		LRK54_RS00550	0.69	+0.1
116,107	-		LRK54_RS00550	0.69	-0.9
116,107	-		LRK54_RS00550	0.69	+0.6
116,107	-		LRK54_RS00550	0.69	-0.3
116,107	-		LRK54_RS00550	0.69	+1.7
116,107	-		LRK54_RS00550	0.69	-1.1
116,107	-		LRK54_RS00550	0.69	+0.4
116,107	-		LRK54_RS00550	0.69	+0.0
116,107	-		LRK54_RS00550	0.69	+0.7
116,107	-		LRK54_RS00550	0.69	+1.0
116,107	-		LRK54_RS00550	0.69	-1.0
116,107	-		LRK54_RS00550	0.69	+1.6
116,107	-		LRK54_RS00550	0.69	+0.5
116,107	-		LRK54_RS00550	0.69	-0.1
116,107	-		LRK54_RS00550	0.69	-1.1
116,107	-		LRK54_RS00550	0.69	+0.9
116,107	-		LRK54_RS00550	0.69	+0.7
116,107	-		LRK54_RS00550	0.69	+0.7
116,107	-		LRK54_RS00550	0.69	+0.1
116,215	+		LRK54_RS00550	0.83	+0.4
116,215	+		LRK54_RS00550	0.83	+0.3
116,215	+		LRK54_RS00550	0.83	+1.1
116,215	+		LRK54_RS00550	0.83	+0.6
116,215	+		LRK54_RS00550	0.83	+0.8
116,215	+		LRK54_RS00550	0.83	+0.2
116,215	+		LRK54_RS00550	0.83	+0.4
116,215	+		LRK54_RS00550	0.83	+1.2
116,215	+		LRK54_RS00550	0.83	-0.0
116,215	+		LRK54_RS00550	0.83	-1.3
116,215	+		LRK54_RS00550	0.83	+0.0
116,215	+		LRK54_RS00550	0.83	+0.6
116,215	+		LRK54_RS00550	0.83	+0.9
116,215	+		LRK54_RS00550	0.83	-1.3
116,216	-		LRK54_RS00550	0.84	-1.5
116,216	-		LRK54_RS00550	0.84	-0.3
116,216	-		LRK54_RS00550	0.84	+1.0
116,216	-		LRK54_RS00550	0.84	-0.7
116,216	-		LRK54_RS00550	0.84	+0.7
116,216	-		LRK54_RS00550	0.84	+0.0
116,216	-		LRK54_RS00550	0.84	-2.0
116,216	-		LRK54_RS00550	0.84	+0.2
116,216	-		LRK54_RS00550	0.84	-0.0
116,216	-		LRK54_RS00550	0.84	-1.3
116,216	-		LRK54_RS00550	0.84	-0.6
116,216	-		LRK54_RS00550	0.84	-0.9
116,216	-		LRK54_RS00550	0.84	-0.3
116,340	+				+0.6
116,340	+				+0.6
116,340	+				+1.1
116,340	+				+3.5
116,340	+				+0.7
116,340	+				-0.7
116,340	+				-0.6
116,340	+				+0.8
116,340	+				-0.7
116,340	+				+0.5
116,340	+				+1.5
116,340	+				-0.9
116,340	+				+1.6
116,340	+				-1.2
116,340	+				-0.0
116,340	+				-0.9
116,340	+				+0.7
116,340	+				+0.5
116,340	+				-0.9
116,340	+				+1.0
116,340	+				+0.4
116,340	+				+0.4
116,340	+				-0.7
116,340	+				-1.6
116,340	+				+0.4
116,340	+				-0.3
116,340	+				+0.7
116,340	+				+0.7
116,340	+				+0.9
116,340	+				+0.7
116,340	+				+0.7
116,340	+				+0.1
116,340	+				+1.3
116,340	+				+0.7
116,340	+				+0.8
116,340	+				-1.9
116,340	+				+0.2
116,340	+				+1.0
116,341	-				+1.1
116,341	-				+0.3
116,341	-				-3.1
116,341	-				-1.3
116,341	-				-0.9
116,341	-				+0.4
116,341	-				-1.2
116,341	-				+0.5
116,341	-				+0.3
116,341	-				-0.9
116,341	-				+0.3
116,341	-				-1.5
116,341	-				-0.6
116,341	-				+0.5
116,341	-				+1.0
116,341	-				+0.3
116,341	-				-2.4
116,341	-				+0.1
116,341	-				-0.2
116,341	-				+0.3
116,341	-				+0.8
116,341	-				+0.7
116,341	-				+0.0
116,341	-				+0.2
116,341	-				+1.1
116,341	-				-1.1
116,341	-				-0.3
116,341	-				+0.2
116,341	-				+0.3
116,341	-				-0.9
116,341	-				+1.1
116,341	-				-0.0
116,341	-				-0.1
116,341	-				+0.2
116,341	-				+1.7
116,341	-				+0.4
116,341	-				+1.6
116,341	-				+1.3
116,341	-				-0.8
116,341	-				+0.4
116,341	-				-1.5
116,341	-				+2.1
116,341	-				-0.9
116,341	-				+0.6
116,341	-				+0.9
116,341	-				-0.5
116,341	-				+0.1
116,341	-				+0.4
116,540	+		LRK54_RS00555	0.60	+0.1
116,540	+		LRK54_RS00555	0.60	+0.7
116,540	+		LRK54_RS00555	0.60	+0.1
116,540	+		LRK54_RS00555	0.60	-2.3
116,540	+		LRK54_RS00555	0.60	+1.0
116,540	+		LRK54_RS00555	0.60	+1.8
116,540	+		LRK54_RS00555	0.60	+0.5
116,540	+		LRK54_RS00555	0.60	-0.6
116,540	+		LRK54_RS00555	0.60	+0.0
116,540	+		LRK54_RS00555	0.60	+0.2
116,540	+		LRK54_RS00555	0.60	-0.1
116,541	-		LRK54_RS00555	0.61	-0.3
116,541	-		LRK54_RS00555	0.61	-1.7
116,541	-		LRK54_RS00555	0.61	+1.1
116,541	-		LRK54_RS00555	0.61	+0.5
116,541	-		LRK54_RS00555	0.61	-0.5
116,541	-		LRK54_RS00555	0.61	+0.5
116,541	-		LRK54_RS00555	0.61	-1.6
117,022	+		LRK54_RS00560	0.46	-2.6
117,022	+		LRK54_RS00560	0.46	-1.3
117,022	+		LRK54_RS00560	0.46	+0.7
117,022	+		LRK54_RS00560	0.46	-2.8
117,022	+		LRK54_RS00560	0.46	-1.9
117,022	+		LRK54_RS00560	0.46	+2.3
117,022	+		LRK54_RS00560	0.46	+0.4
117,022	+		LRK54_RS00560	0.46	-1.2
117,022	+		LRK54_RS00560	0.46	-1.3
117,022	+		LRK54_RS00560	0.46	-0.6
117,022	+		LRK54_RS00560	0.46	-0.9
117,023	-		LRK54_RS00560	0.46	-1.2
117,023	-		LRK54_RS00560	0.46	-1.1
117,023	-		LRK54_RS00560	0.46	+0.1
117,023	-		LRK54_RS00560	0.46	-1.3
117,023	-		LRK54_RS00560	0.46	-1.2
117,023	-		LRK54_RS00560	0.46	+1.7
117,023	-		LRK54_RS00560	0.46	-1.2
117,045	+		LRK54_RS00560	0.49	-1.0
117,045	+		LRK54_RS00560	0.49	-0.3
117,045	+		LRK54_RS00560	0.49	-1.2
117,045	+		LRK54_RS00560	0.49	-2.0
117,045	+		LRK54_RS00560	0.49	-2.7
117,045	+		LRK54_RS00560	0.49	-1.9
117,045	+		LRK54_RS00560	0.49	-3.6
117,045	+		LRK54_RS00560	0.49	-3.0
117,045	+		LRK54_RS00560	0.49	-1.9
117,046	-		LRK54_RS00560	0.49	-0.3
117,046	-		LRK54_RS00560	0.49	-1.4
117,046	-		LRK54_RS00560	0.49	-2.0
117,046	-		LRK54_RS00560	0.49	-1.0
117,046	-		LRK54_RS00560	0.49	-1.6
117,046	-		LRK54_RS00560	0.49	-1.4
117,391	+				-0.7
117,391	+				-1.6
117,391	+				-2.2
117,391	+				-0.9
117,391	+				-1.5
117,391	+				-2.1
117,391	+				-3.0
117,391	+				-1.6
117,391	+				-3.5
117,391	+				-0.9
117,391	+				+0.2
117,391	+				-0.9
117,391	+				-2.8
117,391	+				-0.9
117,391	+				-4.6
117,391	+				-1.8
117,391	+				-2.1
117,391	+				-0.9
117,391	+				-1.3
117,391	+				-0.3
117,391	+				-2.1
117,391	+				-3.0
117,392	-				+0.7
117,392	-				-1.1
117,392	-				-2.7
117,392	-				+0.3
117,392	-				-1.6
117,392	-				-2.8
117,392	-				-2.5
117,392	-				-1.9
117,392	-				-2.7
117,392	-				-2.8
117,392	-				-1.6
117,392	-				-3.2
117,392	-				-1.9
117,392	-				-1.1
117,392	-				-3.3
117,392	-				-1.3
117,392	-				-3.3
117,392	-				-3.3
117,392	-				-0.0
117,392	-				-1.6
117,525	+		LRK54_RS00565	0.21	+2.0
117,525	+		LRK54_RS00565	0.21	-0.1
117,525	+		LRK54_RS00565	0.21	+0.3
117,526	-		LRK54_RS00565	0.21	-0.5
117,526	-		LRK54_RS00565	0.21	+0.1
117,526	-		LRK54_RS00565	0.21	+0.4
117,928	+				+0.3
117,928	+				-0.6
117,928	+				-0.3
117,928	+				+0.6
117,928	+				-1.4
117,928	+				-0.6
117,928	+				+0.7
117,928	+				-0.7
117,928	+				+0.1
117,928	+				-0.5
117,928	+				+0.6
117,928	+				+0.7
117,928	+				-0.2
117,928	+				-0.0
117,928	+				+0.7
117,928	+				+0.5
117,928	+				+0.4
117,928	+				-1.3
117,929	-				+0.7
117,929	-				+0.0
117,929	-				+0.1
117,929	-				+0.3
117,929	-				+0.6
117,929	-				-1.4
117,929	-				+0.2
117,929	-				-0.3
117,929	-				+0.3
117,929	-				+0.2
117,929	-				-0.3
117,929	-				+0.7
117,929	-				+0.0
117,929	-				+0.1
117,929	-				+0.2
117,929	-				+0.1
117,929	-				+0.0
117,929	-				-0.1
117,929	-				+0.6
117,983	+				+0.5
117,983	+				+1.7
117,984	-				+0.4
117,984	-				+0.0
117,984	-				-0.2
117,984	-				+0.4
117,984	-				-1.1
117,984	-				+0.2
117,984	-				-0.7
117,999	+				-1.6
117,999	+				+0.3
117,999	+				+0.3
117,999	+				-0.6
117,999	+				+0.0
117,999	+				+0.3
117,999	+				-0.4
117,999	+				+0.6
117,999	+				-1.3
117,999	+				+1.5
117,999	+				+1.5
117,999	+				+0.3
117,999	+				-0.8
117,999	+				+0.7
117,999	+				-0.3
117,999	+				-1.3
117,999	+				-0.1
117,999	+				-1.9
117,999	+				-0.2
117,999	+				+1.4
117,999	+				+0.2
117,999	+				-1.3
117,999	+				-0.6
117,999	+				-0.8
117,999	+				-1.2
117,999	+				+0.4
117,999	+				-0.1
117,999	+				-0.5
118,000	-				+0.6
118,000	-				-0.7
118,000	-				-0.7
118,000	-				-0.0
118,000	-				-0.6
118,000	-				-0.9
118,000	-				+0.1
118,000	-				-0.3
118,000	-				-0.7
118,000	-				+0.0
118,000	-				+0.5
118,000	-				-1.1
118,000	-				-0.9
118,000	-				-1.5
118,000	-				-2.1
118,000	-				-0.6
118,000	-				-0.4
118,153	+				+1.0
118,153	+				+0.0
118,153	+				-1.5
118,153	+				+0.5
118,153	+				+0.1
118,153	+				+0.3
118,153	+				-1.3
118,153	+				+0.7
118,153	+				+0.1
118,153	+				-0.9
118,153	+				+0.4
118,153	+				-2.3
118,153	+				+1.3
118,153	+				+0.1
118,153	+				+0.0
118,153	+				+1.0
118,153	+				-0.2
118,153	+				-0.4
118,153	+				+0.3
118,153	+				-0.5
118,153	+				-1.0
118,153	+				-2.0
118,154	+				+0.2
118,154	-				+0.7
118,154	-				-0.3
118,154	-				+0.2
118,154	-				-1.3
118,154	-				+0.1
118,154	-				-0.9
118,154	-				-0.9
118,154	-				-0.6
118,154	-				-0.6
118,154	-				+0.1
118,154	-				-0.1
118,154	-				+0.0
118,154	-				+0.3
118,154	-				+0.3
118,154	-				-2.1
118,154	-				-1.0
118,154	-				+1.0
118,154	-				-0.0