Experiment: R2A with SpecU metal mix 1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00080 and LRK54_RS00085 are separated by 153 nucleotides LRK54_RS00085 and LRK54_RS00090 are separated by 8 nucleotides
LRK54_RS00080: LRK54_RS00080 - helix-turn-helix domain-containing protein, at 15,263 to 16,258
_RS00080
LRK54_RS00085: LRK54_RS00085 - tetratricopeptide repeat protein, at 16,412 to 17,062
_RS00085
LRK54_RS00090: LRK54_RS00090 - outer membrane protein assembly factor BamB, at 17,071 to 18,270
_RS00090
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1 at 15.485 kb on + strand, within LRK54_RS00080 at 15.485 kb on + strand, within LRK54_RS00080 at 15.485 kb on + strand, within LRK54_RS00080 at 15.485 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.509 kb on + strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.510 kb on - strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.521 kb on + strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.522 kb on - strand, within LRK54_RS00080 at 15.523 kb on + strand, within LRK54_RS00080 at 15.524 kb on - strand, within LRK54_RS00080 at 15.533 kb on + strand, within LRK54_RS00080 at 15.533 kb on + strand, within LRK54_RS00080 at 15.533 kb on + strand, within LRK54_RS00080 at 15.533 kb on + strand, within LRK54_RS00080 at 15.533 kb on + strand, within LRK54_RS00080 at 15.550 kb on + strand, within LRK54_RS00080 at 15.657 kb on - strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.674 kb on + strand, within LRK54_RS00080 at 15.675 kb on - strand, within LRK54_RS00080 at 15.675 kb on - strand, within LRK54_RS00080 at 15.675 kb on - strand, within LRK54_RS00080 at 15.675 kb on - strand, within LRK54_RS00080 at 15.675 kb on - strand, within LRK54_RS00080 at 15.675 kb on - strand, within LRK54_RS00080 at 15.675 kb on - strand, within LRK54_RS00080 at 15.723 kb on + strand, within LRK54_RS00080 at 16.064 kb on + strand, within LRK54_RS00080 at 16.064 kb on + strand, within LRK54_RS00080 at 16.064 kb on + strand, within LRK54_RS00080 at 16.064 kb on + strand, within LRK54_RS00080 at 16.064 kb on + strand, within LRK54_RS00080 at 16.065 kb on - strand, within LRK54_RS00080 at 16.065 kb on - strand, within LRK54_RS00080 at 16.065 kb on - strand, within LRK54_RS00080 at 16.065 kb on - strand, within LRK54_RS00080 at 16.065 kb on - strand, within LRK54_RS00080 at 16.065 kb on - strand, within LRK54_RS00080 at 16.296 kb on - strand at 16.296 kb on - strand at 16.427 kb on + strand at 16.427 kb on + strand at 16.427 kb on + strand at 16.436 kb on + strand at 16.661 kb on + strand, within LRK54_RS00085 at 16.662 kb on - strand, within LRK54_RS00085 at 16.683 kb on + strand, within LRK54_RS00085 at 16.886 kb on + strand, within LRK54_RS00085 at 16.886 kb on + strand, within LRK54_RS00085 at 16.887 kb on - strand, within LRK54_RS00085 at 16.961 kb on + strand, within LRK54_RS00085
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with SpecU metal mix 1 X remove 15,485 + LRK54_RS00080 0.22 -2.3 15,485 + LRK54_RS00080 0.22 -1.3 15,485 + LRK54_RS00080 0.22 -2.1 15,485 + LRK54_RS00080 0.22 -2.5 15,509 + LRK54_RS00080 0.25 +0.7 15,509 + LRK54_RS00080 0.25 -1.9 15,509 + LRK54_RS00080 0.25 -0.9 15,509 + LRK54_RS00080 0.25 -1.6 15,509 + LRK54_RS00080 0.25 -0.3 15,509 + LRK54_RS00080 0.25 -1.6 15,509 + LRK54_RS00080 0.25 -0.3 15,509 + LRK54_RS00080 0.25 -2.3 15,509 + LRK54_RS00080 0.25 -1.3 15,510 - LRK54_RS00080 0.25 +0.7 15,510 - LRK54_RS00080 0.25 -1.6 15,510 - LRK54_RS00080 0.25 +0.7 15,510 - LRK54_RS00080 0.25 -2.6 15,510 - LRK54_RS00080 0.25 -1.9 15,510 - LRK54_RS00080 0.25 -0.3 15,510 - LRK54_RS00080 0.25 -2.3 15,510 - LRK54_RS00080 0.25 -0.3 15,521 + LRK54_RS00080 0.26 -1.9 15,521 + LRK54_RS00080 0.26 -1.6 15,521 + LRK54_RS00080 0.26 -0.3 15,521 + LRK54_RS00080 0.26 -0.3 15,521 + LRK54_RS00080 0.26 -0.3 15,521 + LRK54_RS00080 0.26 +1.7 15,521 + LRK54_RS00080 0.26 -2.5 15,521 + LRK54_RS00080 0.26 -0.9 15,521 + LRK54_RS00080 0.26 -0.3 15,521 + LRK54_RS00080 0.26 -0.9 15,521 + LRK54_RS00080 0.26 -0.3 15,521 + LRK54_RS00080 0.26 -0.3 15,521 + LRK54_RS00080 0.26 +0.7 15,521 + LRK54_RS00080 0.26 -1.3 15,521 + LRK54_RS00080 0.26 -0.9 15,521 + LRK54_RS00080 0.26 -1.9 15,521 + LRK54_RS00080 0.26 +0.7 15,521 + LRK54_RS00080 0.26 -0.3 15,521 + LRK54_RS00080 0.26 +0.7 15,522 - LRK54_RS00080 0.26 +0.7 15,522 - LRK54_RS00080 0.26 -1.6 15,522 - LRK54_RS00080 0.26 -0.3 15,522 - LRK54_RS00080 0.26 -0.3 15,522 - LRK54_RS00080 0.26 -0.9 15,522 - LRK54_RS00080 0.26 -0.9 15,522 - LRK54_RS00080 0.26 -1.9 15,522 - LRK54_RS00080 0.26 +1.3 15,522 - LRK54_RS00080 0.26 -1.3 15,522 - LRK54_RS00080 0.26 -1.3 15,522 - LRK54_RS00080 0.26 -0.9 15,522 - LRK54_RS00080 0.26 -0.9 15,522 - LRK54_RS00080 0.26 +0.7 15,522 - LRK54_RS00080 0.26 -1.6 15,522 - LRK54_RS00080 0.26 -0.9 15,522 - LRK54_RS00080 0.26 +0.7 15,522 - LRK54_RS00080 0.26 -0.3 15,522 - LRK54_RS00080 0.26 -1.6 15,522 - LRK54_RS00080 0.26 -0.3 15,523 + LRK54_RS00080 0.26 -1.3 15,524 - LRK54_RS00080 0.26 -2.1 15,533 + LRK54_RS00080 0.27 -0.3 15,533 + LRK54_RS00080 0.27 -2.1 15,533 + LRK54_RS00080 0.27 -2.1 15,533 + LRK54_RS00080 0.27 -1.3 15,533 + LRK54_RS00080 0.27 -1.3 15,550 + LRK54_RS00080 0.29 +0.7 15,657 - LRK54_RS00080 0.40 -0.9 15,674 + LRK54_RS00080 0.41 +0.7 15,674 + LRK54_RS00080 0.41 -0.3 15,674 + LRK54_RS00080 0.41 -1.6 15,674 + LRK54_RS00080 0.41 -1.9 15,674 + LRK54_RS00080 0.41 -1.6 15,674 + LRK54_RS00080 0.41 -1.9 15,674 + LRK54_RS00080 0.41 -1.6 15,674 + LRK54_RS00080 0.41 -1.3 15,675 - LRK54_RS00080 0.41 -0.9 15,675 - LRK54_RS00080 0.41 -1.3 15,675 - LRK54_RS00080 0.41 -1.3 15,675 - LRK54_RS00080 0.41 -1.6 15,675 - LRK54_RS00080 0.41 -0.3 15,675 - LRK54_RS00080 0.41 -0.9 15,675 - LRK54_RS00080 0.41 -1.6 15,723 + LRK54_RS00080 0.46 -0.9 16,064 + LRK54_RS00080 0.80 -0.1 16,064 + LRK54_RS00080 0.80 -0.6 16,064 + LRK54_RS00080 0.80 +1.7 16,064 + LRK54_RS00080 0.80 -0.9 16,064 + LRK54_RS00080 0.80 +0.4 16,065 - LRK54_RS00080 0.81 -0.1 16,065 - LRK54_RS00080 0.81 -0.3 16,065 - LRK54_RS00080 0.81 -0.1 16,065 - LRK54_RS00080 0.81 +0.3 16,065 - LRK54_RS00080 0.81 -1.1 16,065 - LRK54_RS00080 0.81 -1.6 16,296 - -0.9 16,296 - -1.3 16,427 + -1.3 16,427 + -1.6 16,427 + -2.1 16,436 + -0.9 16,661 + LRK54_RS00085 0.38 -2.1 16,662 - LRK54_RS00085 0.38 +0.7 16,683 + LRK54_RS00085 0.42 -1.6 16,886 + LRK54_RS00085 0.73 -1.9 16,886 + LRK54_RS00085 0.73 -0.3 16,887 - LRK54_RS00085 0.73 -1.6 16,961 + LRK54_RS00085 0.84 -0.9
Or see this region's nucleotide sequence