Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4197

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4196 and Ga0059261_4197 overlap by 1 nucleotidesGa0059261_4197 and Ga0059261_4198 overlap by 4 nucleotides Ga0059261_4196: Ga0059261_4196 - FemAB-related protein, PEP-CTERM system-associated, at 4,347,381 to 4,348,454 _4196 Ga0059261_4197: Ga0059261_4197 - sugar transferase, PEP-CTERM/EpsH1 system associated, at 4,348,454 to 4,349,677 _4197 Ga0059261_4198: Ga0059261_4198 - exosortase A, at 4,349,674 to 4,351,212 _4198 Position (kb) 4348 4349 4350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4347.552 kb on + strand, within Ga0059261_4196at 4347.552 kb on + strand, within Ga0059261_4196at 4347.552 kb on + strand, within Ga0059261_4196at 4347.552 kb on + strand, within Ga0059261_4196at 4347.552 kb on + strand, within Ga0059261_4196at 4347.552 kb on + strand, within Ga0059261_4196at 4347.552 kb on + strand, within Ga0059261_4196at 4347.553 kb on - strand, within Ga0059261_4196at 4347.553 kb on - strand, within Ga0059261_4196at 4347.553 kb on - strand, within Ga0059261_4196at 4347.807 kb on + strand, within Ga0059261_4196at 4347.808 kb on - strand, within Ga0059261_4196at 4347.808 kb on - strand, within Ga0059261_4196at 4347.808 kb on - strand, within Ga0059261_4196at 4347.915 kb on - strand, within Ga0059261_4196at 4347.915 kb on - strand, within Ga0059261_4196at 4347.954 kb on + strandat 4347.954 kb on + strandat 4347.954 kb on + strand, within Ga0059261_4196at 4347.955 kb on - strandat 4347.963 kb on + strand, within Ga0059261_4196at 4348.122 kb on + strand, within Ga0059261_4196at 4348.122 kb on + strand, within Ga0059261_4196at 4348.122 kb on + strand, within Ga0059261_4196at 4348.122 kb on + strand, within Ga0059261_4196at 4348.122 kb on + strand, within Ga0059261_4196at 4348.122 kb on + strand, within Ga0059261_4196at 4348.122 kb on + strand, within Ga0059261_4196at 4348.123 kb on - strand, within Ga0059261_4196at 4348.123 kb on - strand, within Ga0059261_4196at 4348.123 kb on - strand, within Ga0059261_4196at 4348.128 kb on + strand, within Ga0059261_4196at 4348.129 kb on - strand, within Ga0059261_4196at 4348.182 kb on + strand, within Ga0059261_4196at 4348.182 kb on + strand, within Ga0059261_4196at 4348.182 kb on + strand, within Ga0059261_4196at 4348.183 kb on - strand, within Ga0059261_4196at 4348.183 kb on - strand, within Ga0059261_4196at 4348.183 kb on - strand, within Ga0059261_4196at 4348.308 kb on + strand, within Ga0059261_4196at 4348.308 kb on + strand, within Ga0059261_4196at 4348.311 kb on + strand, within Ga0059261_4196at 4348.311 kb on + strandat 4348.311 kb on + strand, within Ga0059261_4196at 4348.312 kb on - strand, within Ga0059261_4196at 4348.312 kb on - strand, within Ga0059261_4196at 4348.312 kb on - strand, within Ga0059261_4196at 4348.368 kb on + strandat 4348.538 kb on + strandat 4348.538 kb on + strandat 4348.539 kb on - strandat 4348.539 kb on - strandat 4348.552 kb on + strandat 4348.552 kb on + strandat 4348.552 kb on + strandat 4348.553 kb on - strandat 4348.784 kb on + strand, within Ga0059261_4197at 4348.784 kb on + strand, within Ga0059261_4197at 4348.784 kb on + strand, within Ga0059261_4197at 4348.784 kb on + strand, within Ga0059261_4197at 4348.784 kb on + strand, within Ga0059261_4197at 4348.784 kb on + strand, within Ga0059261_4197at 4348.784 kb on + strand, within Ga0059261_4197at 4348.785 kb on - strand, within Ga0059261_4197at 4348.785 kb on - strand, within Ga0059261_4197at 4348.785 kb on - strand, within Ga0059261_4197at 4348.785 kb on - strand, within Ga0059261_4197at 4348.785 kb on - strand, within Ga0059261_4197at 4348.785 kb on - strand, within Ga0059261_4197at 4348.785 kb on - strand, within Ga0059261_4197at 4348.811 kb on + strand, within Ga0059261_4197at 4348.811 kb on + strand, within Ga0059261_4197at 4348.811 kb on + strand, within Ga0059261_4197at 4348.811 kb on + strand, within Ga0059261_4197at 4348.811 kb on + strand, within Ga0059261_4197at 4348.811 kb on + strand, within Ga0059261_4197at 4348.811 kb on + strandat 4348.812 kb on - strand, within Ga0059261_4197at 4348.812 kb on - strand, within Ga0059261_4197at 4348.812 kb on - strandat 4348.883 kb on + strand, within Ga0059261_4197at 4348.883 kb on + strand, within Ga0059261_4197at 4348.884 kb on - strand, within Ga0059261_4197at 4348.884 kb on - strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.047 kb on + strand, within Ga0059261_4197at 4349.048 kb on - strand, within Ga0059261_4197at 4349.049 kb on - strand, within Ga0059261_4197at 4349.069 kb on - strand, within Ga0059261_4197at 4349.150 kb on + strand, within Ga0059261_4197at 4349.150 kb on + strand, within Ga0059261_4197at 4349.150 kb on + strand, within Ga0059261_4197at 4349.150 kb on + strand, within Ga0059261_4197at 4349.150 kb on + strand, within Ga0059261_4197at 4349.151 kb on - strand, within Ga0059261_4197at 4349.151 kb on - strand, within Ga0059261_4197at 4349.151 kb on - strand, within Ga0059261_4197at 4349.162 kb on - strand, within Ga0059261_4197at 4349.582 kb on + strandat 4349.582 kb on + strandat 4349.583 kb on - strandat 4349.583 kb on - strandat 4349.583 kb on - strandat 4349.583 kb on - strandat 4349.659 kb on + strandat 4349.659 kb on + strandat 4349.659 kb on + strandat 4349.660 kb on - strandat 4349.682 kb on + strandat 4349.682 kb on + strandat 4349.682 kb on + strandat 4349.683 kb on - strandat 4349.712 kb on + strandat 4349.712 kb on + strandat 4349.713 kb on - strandat 4349.774 kb on + strandat 4349.774 kb on + strandat 4349.774 kb on + strandat 4349.775 kb on - strandat 4349.775 kb on - strandat 4349.775 kb on - strandat 4349.821 kb on + strandat 4349.821 kb on + strandat 4349.821 kb on + strandat 4349.821 kb on + strandat 4349.821 kb on + strandat 4349.821 kb on + strandat 4349.822 kb on - strandat 4349.822 kb on - strandat 4349.822 kb on - strandat 4350.029 kb on + strand, within Ga0059261_4198at 4350.029 kb on + strand, within Ga0059261_4198at 4350.029 kb on + strand, within Ga0059261_4198at 4350.029 kb on + strand, within Ga0059261_4198at 4350.029 kb on + strand, within Ga0059261_4198at 4350.029 kb on + strand, within Ga0059261_4198at 4350.030 kb on - strand, within Ga0059261_4198at 4350.030 kb on - strand, within Ga0059261_4198at 4350.030 kb on - strand, within Ga0059261_4198at 4350.030 kb on - strand, within Ga0059261_4198at 4350.094 kb on + strand, within Ga0059261_4198at 4350.094 kb on + strand, within Ga0059261_4198at 4350.094 kb on + strand, within Ga0059261_4198at 4350.094 kb on + strand, within Ga0059261_4198at 4350.095 kb on - strand, within Ga0059261_4198at 4350.095 kb on - strand, within Ga0059261_4198at 4350.095 kb on - strand, within Ga0059261_4198at 4350.095 kb on - strand, within Ga0059261_4198at 4350.095 kb on - strand, within Ga0059261_4198at 4350.236 kb on - strand, within Ga0059261_4198at 4350.236 kb on - strand, within Ga0059261_4198at 4350.319 kb on + strand, within Ga0059261_4198at 4350.319 kb on + strand, within Ga0059261_4198at 4350.320 kb on - strand, within Ga0059261_4198at 4350.320 kb on - strand, within Ga0059261_4198at 4350.320 kb on - strand, within Ga0059261_4198at 4350.409 kb on + strand, within Ga0059261_4198at 4350.410 kb on - strand, within Ga0059261_4198at 4350.410 kb on - strand, within Ga0059261_4198at 4350.410 kb on - strand, within Ga0059261_4198at 4350.410 kb on - strand, within Ga0059261_4198at 4350.410 kb on - strand, within Ga0059261_4198at 4350.410 kb on - strand, within Ga0059261_4198at 4350.410 kb on - strand, within Ga0059261_4198at 4350.410 kb on - strand, within Ga0059261_4198at 4350.418 kb on + strand, within Ga0059261_4198at 4350.419 kb on - strand, within Ga0059261_4198at 4350.448 kb on + strand, within Ga0059261_4198at 4350.448 kb on + strand, within Ga0059261_4198at 4350.449 kb on - strand, within Ga0059261_4198at 4350.463 kb on + strand, within Ga0059261_4198at 4350.463 kb on + strand, within Ga0059261_4198at 4350.463 kb on + strand, within Ga0059261_4198at 4350.463 kb on + strand, within Ga0059261_4198at 4350.463 kb on + strand, within Ga0059261_4198at 4350.464 kb on - strand, within Ga0059261_4198at 4350.464 kb on - strand, within Ga0059261_4198at 4350.464 kb on - strand, within Ga0059261_4198at 4350.464 kb on - strand, within Ga0059261_4198

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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4,347,552 + Ga0059261_4196 0.16 -0.4
4,347,552 + Ga0059261_4196 0.16 +0.6
4,347,552 + Ga0059261_4196 0.16 +0.4
4,347,552 + Ga0059261_4196 0.16 +0.4
4,347,552 + Ga0059261_4196 0.16 -0.7
4,347,552 + Ga0059261_4196 0.16 +0.5
4,347,552 + Ga0059261_4196 0.16 +0.0
4,347,553 - Ga0059261_4196 0.16 +0.6
4,347,553 - Ga0059261_4196 0.16 -0.0
4,347,553 - Ga0059261_4196 0.16 +0.7
4,347,807 + Ga0059261_4196 0.40 +0.3
4,347,808 - Ga0059261_4196 0.40 +0.1
4,347,808 - Ga0059261_4196 0.40 +0.5
4,347,808 - Ga0059261_4196 0.40 +1.2
4,347,915 - Ga0059261_4196 0.50 +0.1
4,347,915 - Ga0059261_4196 0.50 -0.1
4,347,954 + +1.8
4,347,954 + +0.9
4,347,954 + Ga0059261_4196 0.53 +1.0
4,347,955 - -0.6
4,347,963 + Ga0059261_4196 0.54 +0.6
4,348,122 + Ga0059261_4196 0.69 +0.3
4,348,122 + Ga0059261_4196 0.69 -1.6
4,348,122 + Ga0059261_4196 0.69 -0.1
4,348,122 + Ga0059261_4196 0.69 -0.1
4,348,122 + Ga0059261_4196 0.69 +0.8
4,348,122 + Ga0059261_4196 0.69 +0.4
4,348,122 + Ga0059261_4196 0.69 -1.0
4,348,123 - Ga0059261_4196 0.69 +0.3
4,348,123 - Ga0059261_4196 0.69 -0.0
4,348,123 - Ga0059261_4196 0.69 +0.6
4,348,128 + Ga0059261_4196 0.70 +0.1
4,348,129 - Ga0059261_4196 0.70 +0.3
4,348,182 + Ga0059261_4196 0.75 -3.7
4,348,182 + Ga0059261_4196 0.75 +0.7
4,348,182 + Ga0059261_4196 0.75 +0.1
4,348,183 - Ga0059261_4196 0.75 -0.1
4,348,183 - Ga0059261_4196 0.75 +0.4
4,348,183 - Ga0059261_4196 0.75 +0.1
4,348,308 + Ga0059261_4196 0.86 +0.5
4,348,308 + Ga0059261_4196 0.86 +0.8
4,348,311 + Ga0059261_4196 0.87 +0.4
4,348,311 + +1.1
4,348,311 + Ga0059261_4196 0.87 +0.1
4,348,312 - Ga0059261_4196 0.87 +0.4
4,348,312 - Ga0059261_4196 0.87 +1.3
4,348,312 - Ga0059261_4196 0.87 -0.0
4,348,368 + +0.7
4,348,538 + -0.4
4,348,538 + -0.1
4,348,539 - +0.2
4,348,539 - +0.1
4,348,552 + -0.2
4,348,552 + -0.1
4,348,552 + +0.2
4,348,553 - +1.1
4,348,784 + Ga0059261_4197 0.27 +0.5
4,348,784 + Ga0059261_4197 0.27 +1.3
4,348,784 + Ga0059261_4197 0.27 +0.6
4,348,784 + Ga0059261_4197 0.27 +0.5
4,348,784 + Ga0059261_4197 0.27 +0.9
4,348,784 + Ga0059261_4197 0.27 +1.2
4,348,784 + Ga0059261_4197 0.27 +0.6
4,348,785 - Ga0059261_4197 0.27 +0.4
4,348,785 - Ga0059261_4197 0.27 +0.5
4,348,785 - Ga0059261_4197 0.27 -0.0
4,348,785 - Ga0059261_4197 0.27 +0.1
4,348,785 - Ga0059261_4197 0.27 +0.0
4,348,785 - Ga0059261_4197 0.27 +1.4
4,348,785 - Ga0059261_4197 0.27 +0.4
4,348,811 + Ga0059261_4197 0.29 -0.1
4,348,811 + Ga0059261_4197 0.29 +1.4
4,348,811 + Ga0059261_4197 0.29 +0.6
4,348,811 + Ga0059261_4197 0.29 +1.0
4,348,811 + Ga0059261_4197 0.29 -0.1
4,348,811 + Ga0059261_4197 0.29 +0.2
4,348,811 + -0.6
4,348,812 - Ga0059261_4197 0.29 +0.2
4,348,812 - Ga0059261_4197 0.29 +0.1
4,348,812 - -0.1
4,348,883 + Ga0059261_4197 0.35 +0.9
4,348,883 + Ga0059261_4197 0.35 -0.0
4,348,884 - Ga0059261_4197 0.35 +0.3
4,348,884 - Ga0059261_4197 0.35 -0.1
4,349,047 + Ga0059261_4197 0.48 -0.1
4,349,047 + Ga0059261_4197 0.48 -0.8
4,349,047 + Ga0059261_4197 0.48 +0.2
4,349,047 + Ga0059261_4197 0.48 +0.8
4,349,047 + Ga0059261_4197 0.48 +0.4
4,349,047 + Ga0059261_4197 0.48 +1.4
4,349,047 + Ga0059261_4197 0.48 +1.5
4,349,047 + Ga0059261_4197 0.48 +0.4
4,349,048 - Ga0059261_4197 0.49 +1.0
4,349,049 - Ga0059261_4197 0.49 +0.7
4,349,069 - Ga0059261_4197 0.50 +0.6
4,349,150 + Ga0059261_4197 0.57 +0.5
4,349,150 + Ga0059261_4197 0.57 +0.0
4,349,150 + Ga0059261_4197 0.57 +1.4
4,349,150 + Ga0059261_4197 0.57 +0.5
4,349,150 + Ga0059261_4197 0.57 +0.3
4,349,151 - Ga0059261_4197 0.57 +0.3
4,349,151 - Ga0059261_4197 0.57 +0.2
4,349,151 - Ga0059261_4197 0.57 -0.0
4,349,162 - Ga0059261_4197 0.58 +1.6
4,349,582 + +0.3
4,349,582 + +0.1
4,349,583 - +0.7
4,349,583 - +1.3
4,349,583 - +0.5
4,349,583 - -0.7
4,349,659 + -0.3
4,349,659 + -1.1
4,349,659 + -0.8
4,349,660 - +0.4
4,349,682 + +0.8
4,349,682 + +0.1
4,349,682 + -0.1
4,349,683 - -0.3
4,349,712 + +0.6
4,349,712 + +0.7
4,349,713 - +0.8
4,349,774 + +1.0
4,349,774 + +0.5
4,349,774 + +1.0
4,349,775 - +1.2
4,349,775 - +0.3
4,349,775 - -0.6
4,349,821 + +0.5
4,349,821 + +0.5
4,349,821 + +0.4
4,349,821 + +0.8
4,349,821 + +0.1
4,349,821 + +0.1
4,349,822 - +1.0
4,349,822 - +0.7
4,349,822 - -1.0
4,350,029 + Ga0059261_4198 0.23 +0.4
4,350,029 + Ga0059261_4198 0.23 +0.3
4,350,029 + Ga0059261_4198 0.23 +0.8
4,350,029 + Ga0059261_4198 0.23 +0.9
4,350,029 + Ga0059261_4198 0.23 +0.1
4,350,029 + Ga0059261_4198 0.23 +0.1
4,350,030 - Ga0059261_4198 0.23 +1.4
4,350,030 - Ga0059261_4198 0.23 +0.4
4,350,030 - Ga0059261_4198 0.23 -0.1
4,350,030 - Ga0059261_4198 0.23 +0.4
4,350,094 + Ga0059261_4198 0.27 -0.1
4,350,094 + Ga0059261_4198 0.27 +1.2
4,350,094 + Ga0059261_4198 0.27 -0.4
4,350,094 + Ga0059261_4198 0.27 -0.0
4,350,095 - Ga0059261_4198 0.27 -0.4
4,350,095 - Ga0059261_4198 0.27 +0.9
4,350,095 - Ga0059261_4198 0.27 +1.2
4,350,095 - Ga0059261_4198 0.27 +1.0
4,350,095 - Ga0059261_4198 0.27 +0.1
4,350,236 - Ga0059261_4198 0.37 +0.2
4,350,236 - Ga0059261_4198 0.37 +0.5
4,350,319 + Ga0059261_4198 0.42 +0.7
4,350,319 + Ga0059261_4198 0.42 -1.1
4,350,320 - Ga0059261_4198 0.42 -0.1
4,350,320 - Ga0059261_4198 0.42 +0.7
4,350,320 - Ga0059261_4198 0.42 +0.8
4,350,409 + Ga0059261_4198 0.48 -0.4
4,350,410 - Ga0059261_4198 0.48 +0.4
4,350,410 - Ga0059261_4198 0.48 +0.1
4,350,410 - Ga0059261_4198 0.48 +0.1
4,350,410 - Ga0059261_4198 0.48 -0.6
4,350,410 - Ga0059261_4198 0.48 +0.1
4,350,410 - Ga0059261_4198 0.48 +0.8
4,350,410 - Ga0059261_4198 0.48 +0.0
4,350,410 - Ga0059261_4198 0.48 +1.7
4,350,418 + Ga0059261_4198 0.48 +0.9
4,350,419 - Ga0059261_4198 0.48 +0.6
4,350,448 + Ga0059261_4198 0.50 +0.6
4,350,448 + Ga0059261_4198 0.50 -0.5
4,350,449 - Ga0059261_4198 0.50 +1.4
4,350,463 + Ga0059261_4198 0.51 +0.4
4,350,463 + Ga0059261_4198 0.51 +0.3
4,350,463 + Ga0059261_4198 0.51 +0.7
4,350,463 + Ga0059261_4198 0.51 +0.4
4,350,463 + Ga0059261_4198 0.51 +0.7
4,350,464 - Ga0059261_4198 0.51 +0.7
4,350,464 - Ga0059261_4198 0.51 +0.0
4,350,464 - Ga0059261_4198 0.51 -0.4
4,350,464 - Ga0059261_4198 0.51 +0.2

Or see this region's nucleotide sequence