Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4019

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4018 and Ga0059261_4019 are separated by 57 nucleotidesGa0059261_4019 and Ga0059261_4020 are separated by 28 nucleotidesGa0059261_4020 and Ga0059261_4021 are separated by 86 nucleotides Ga0059261_4018: Ga0059261_4018 - adenosylhomocysteinase (EC 3.3.1.1), at 4,132,156 to 4,133,571 _4018 Ga0059261_4019: Ga0059261_4019 - Tetratricopeptide repeat/Sulfotransferase family, at 4,133,629 to 4,135,197 _4019 Ga0059261_4020: Ga0059261_4020 - hypothetical protein, at 4,135,226 to 4,136,011 _4020 Ga0059261_4021: Ga0059261_4021 - TonB dependent receptor/TonB-dependent Receptor Plug Domain, at 4,136,098 to 4,139,196 _4021 Position (kb) 4133 4134 4135 4136Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4133.681 kb on + strandat 4133.681 kb on + strandat 4133.682 kb on - strandat 4133.807 kb on + strand, within Ga0059261_4019at 4133.807 kb on + strand, within Ga0059261_4019at 4133.807 kb on + strand, within Ga0059261_4019at 4133.807 kb on + strand, within Ga0059261_4019at 4133.848 kb on + strand, within Ga0059261_4019at 4133.848 kb on + strand, within Ga0059261_4019at 4133.848 kb on + strand, within Ga0059261_4019at 4133.848 kb on + strand, within Ga0059261_4019at 4133.849 kb on - strand, within Ga0059261_4019at 4133.858 kb on + strand, within Ga0059261_4019at 4133.858 kb on + strand, within Ga0059261_4019at 4133.858 kb on + strand, within Ga0059261_4019at 4133.858 kb on + strand, within Ga0059261_4019at 4133.858 kb on + strand, within Ga0059261_4019at 4133.858 kb on + strand, within Ga0059261_4019at 4133.858 kb on + strand, within Ga0059261_4019at 4133.859 kb on - strand, within Ga0059261_4019at 4133.859 kb on - strand, within Ga0059261_4019at 4133.859 kb on - strand, within Ga0059261_4019at 4133.859 kb on - strand, within Ga0059261_4019at 4133.863 kb on + strand, within Ga0059261_4019at 4133.863 kb on + strand, within Ga0059261_4019at 4133.863 kb on + strand, within Ga0059261_4019at 4133.863 kb on + strand, within Ga0059261_4019at 4133.863 kb on + strand, within Ga0059261_4019at 4133.863 kb on + strand, within Ga0059261_4019at 4133.863 kb on + strand, within Ga0059261_4019at 4133.863 kb on + strand, within Ga0059261_4019at 4133.864 kb on - strand, within Ga0059261_4019at 4133.864 kb on - strand, within Ga0059261_4019at 4133.864 kb on - strand, within Ga0059261_4019at 4133.864 kb on - strand, within Ga0059261_4019at 4133.864 kb on - strand, within Ga0059261_4019at 4133.864 kb on - strand, within Ga0059261_4019at 4133.864 kb on - strand, within Ga0059261_4019at 4133.864 kb on - strand, within Ga0059261_4019at 4133.864 kb on - strand, within Ga0059261_4019at 4133.864 kb on - strand, within Ga0059261_4019at 4133.864 kb on - strand, within Ga0059261_4019at 4133.864 kb on - strand, within Ga0059261_4019at 4133.918 kb on + strand, within Ga0059261_4019at 4133.918 kb on + strand, within Ga0059261_4019at 4133.918 kb on + strand, within Ga0059261_4019at 4133.918 kb on + strand, within Ga0059261_4019at 4133.918 kb on + strand, within Ga0059261_4019at 4133.918 kb on + strand, within Ga0059261_4019at 4133.918 kb on + strand, within Ga0059261_4019at 4133.918 kb on + strand, within Ga0059261_4019at 4133.918 kb on + strand, within Ga0059261_4019at 4133.919 kb on - strand, within Ga0059261_4019at 4133.919 kb on - strand, within Ga0059261_4019at 4133.927 kb on + strand, within Ga0059261_4019at 4133.927 kb on + strand, within Ga0059261_4019at 4133.927 kb on + strand, within Ga0059261_4019at 4133.927 kb on + strand, within Ga0059261_4019at 4133.928 kb on - strand, within Ga0059261_4019at 4133.928 kb on - strand, within Ga0059261_4019at 4134.049 kb on + strand, within Ga0059261_4019at 4134.049 kb on + strand, within Ga0059261_4019at 4134.049 kb on + strand, within Ga0059261_4019at 4134.050 kb on - strand, within Ga0059261_4019at 4134.050 kb on - strand, within Ga0059261_4019at 4134.050 kb on - strand, within Ga0059261_4019at 4134.149 kb on + strand, within Ga0059261_4019at 4134.149 kb on + strand, within Ga0059261_4019at 4134.150 kb on - strand, within Ga0059261_4019at 4134.173 kb on + strand, within Ga0059261_4019at 4134.173 kb on + strand, within Ga0059261_4019at 4134.173 kb on + strand, within Ga0059261_4019at 4134.174 kb on - strand, within Ga0059261_4019at 4134.174 kb on - strand, within Ga0059261_4019at 4134.174 kb on - strand, within Ga0059261_4019at 4134.266 kb on + strand, within Ga0059261_4019at 4134.266 kb on + strand, within Ga0059261_4019at 4134.266 kb on + strand, within Ga0059261_4019at 4134.267 kb on - strand, within Ga0059261_4019at 4134.267 kb on - strand, within Ga0059261_4019at 4134.267 kb on - strand, within Ga0059261_4019at 4134.267 kb on - strand, within Ga0059261_4019at 4134.267 kb on - strand, within Ga0059261_4019at 4134.267 kb on - strand, within Ga0059261_4019at 4134.267 kb on - strand, within Ga0059261_4019at 4134.447 kb on + strand, within Ga0059261_4019at 4134.464 kb on + strand, within Ga0059261_4019at 4134.465 kb on - strand, within Ga0059261_4019at 4134.465 kb on - strand, within Ga0059261_4019at 4134.465 kb on - strand, within Ga0059261_4019at 4134.465 kb on - strand, within Ga0059261_4019at 4134.503 kb on + strand, within Ga0059261_4019at 4134.503 kb on + strand, within Ga0059261_4019at 4134.503 kb on + strand, within Ga0059261_4019at 4134.504 kb on - strand, within Ga0059261_4019at 4134.504 kb on - strand, within Ga0059261_4019at 4134.587 kb on + strand, within Ga0059261_4019at 4134.624 kb on + strand, within Ga0059261_4019at 4134.624 kb on + strand, within Ga0059261_4019at 4134.624 kb on + strand, within Ga0059261_4019at 4134.625 kb on - strand, within Ga0059261_4019at 4134.625 kb on - strand, within Ga0059261_4019at 4134.654 kb on + strand, within Ga0059261_4019at 4134.654 kb on + strand, within Ga0059261_4019at 4134.714 kb on - strand, within Ga0059261_4019at 4134.764 kb on + strand, within Ga0059261_4019at 4134.764 kb on + strand, within Ga0059261_4019at 4134.764 kb on + strand, within Ga0059261_4019at 4134.764 kb on + strand, within Ga0059261_4019at 4134.765 kb on - strand, within Ga0059261_4019at 4134.765 kb on - strand, within Ga0059261_4019at 4134.765 kb on - strand, within Ga0059261_4019at 4134.765 kb on - strand, within Ga0059261_4019at 4134.917 kb on - strand, within Ga0059261_4019at 4134.917 kb on - strand, within Ga0059261_4019at 4135.174 kb on + strandat 4135.174 kb on + strandat 4135.174 kb on + strandat 4135.174 kb on + strandat 4135.175 kb on - strandat 4135.175 kb on - strandat 4135.184 kb on + strandat 4135.184 kb on + strandat 4135.184 kb on + strandat 4135.234 kb on - strandat 4135.266 kb on + strandat 4135.266 kb on + strandat 4135.267 kb on - strandat 4135.319 kb on - strand, within Ga0059261_4020at 4135.433 kb on - strand, within Ga0059261_4020at 4135.433 kb on - strand, within Ga0059261_4020at 4135.433 kb on - strand, within Ga0059261_4020at 4135.542 kb on + strand, within Ga0059261_4020at 4135.542 kb on + strand, within Ga0059261_4020at 4135.542 kb on + strand, within Ga0059261_4020at 4135.543 kb on - strand, within Ga0059261_4020at 4135.543 kb on - strand, within Ga0059261_4020at 4135.543 kb on - strand, within Ga0059261_4020at 4135.543 kb on - strand, within Ga0059261_4020at 4135.543 kb on - strand, within Ga0059261_4020at 4135.543 kb on - strand, within Ga0059261_4020at 4135.543 kb on - strand, within Ga0059261_4020at 4135.567 kb on + strand, within Ga0059261_4020at 4135.648 kb on + strand, within Ga0059261_4020at 4135.648 kb on + strand, within Ga0059261_4020at 4135.649 kb on - strand, within Ga0059261_4020at 4135.707 kb on + strand, within Ga0059261_4020at 4135.707 kb on + strand, within Ga0059261_4020at 4135.708 kb on - strand, within Ga0059261_4020at 4135.708 kb on - strand, within Ga0059261_4020at 4135.717 kb on + strand, within Ga0059261_4020at 4135.718 kb on - strand, within Ga0059261_4020at 4135.851 kb on + strand, within Ga0059261_4020at 4135.851 kb on + strand, within Ga0059261_4020at 4135.851 kb on + strand, within Ga0059261_4020at 4135.851 kb on + strand, within Ga0059261_4020at 4135.851 kb on + strand, within Ga0059261_4020at 4135.851 kb on + strand, within Ga0059261_4020at 4135.851 kb on + strand, within Ga0059261_4020at 4135.851 kb on + strand, within Ga0059261_4020at 4135.851 kb on + strand, within Ga0059261_4020at 4135.851 kb on + strand, within Ga0059261_4020at 4135.851 kb on + strand, within Ga0059261_4020at 4135.852 kb on - strand, within Ga0059261_4020at 4135.852 kb on - strand, within Ga0059261_4020at 4135.852 kb on - strand, within Ga0059261_4020at 4135.852 kb on - strand, within Ga0059261_4020at 4135.852 kb on - strand, within Ga0059261_4020at 4135.852 kb on - strand, within Ga0059261_4020at 4135.852 kb on - strand, within Ga0059261_4020at 4135.999 kb on + strandat 4135.999 kb on + strandat 4135.999 kb on + strandat 4135.999 kb on + strandat 4136.000 kb on - strandat 4136.000 kb on - strandat 4136.000 kb on - strandat 4136.092 kb on - strandat 4136.094 kb on - strandat 4136.094 kb on - strandat 4136.094 kb on - strandat 4136.094 kb on - strandat 4136.099 kb on + strandat 4136.100 kb on - strandat 4136.100 kb on - strandat 4136.147 kb on + strandat 4136.147 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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4,133,681 + +0.1
4,133,681 + +0.7
4,133,682 - +0.3
4,133,807 + Ga0059261_4019 0.11 +0.4
4,133,807 + Ga0059261_4019 0.11 -0.7
4,133,807 + Ga0059261_4019 0.11 +0.4
4,133,807 + Ga0059261_4019 0.11 -0.3
4,133,848 + Ga0059261_4019 0.14 -0.2
4,133,848 + Ga0059261_4019 0.14 -0.1
4,133,848 + Ga0059261_4019 0.14 +0.7
4,133,848 + Ga0059261_4019 0.14 +0.1
4,133,849 - Ga0059261_4019 0.14 +0.4
4,133,858 + Ga0059261_4019 0.15 +0.9
4,133,858 + Ga0059261_4019 0.15 +0.1
4,133,858 + Ga0059261_4019 0.15 +0.1
4,133,858 + Ga0059261_4019 0.15 +1.9
4,133,858 + Ga0059261_4019 0.15 +0.3
4,133,858 + Ga0059261_4019 0.15 +1.3
4,133,858 + Ga0059261_4019 0.15 +0.4
4,133,859 - Ga0059261_4019 0.15 +0.3
4,133,859 - Ga0059261_4019 0.15 +0.2
4,133,859 - Ga0059261_4019 0.15 +0.1
4,133,859 - Ga0059261_4019 0.15 +0.7
4,133,863 + Ga0059261_4019 0.15 +0.3
4,133,863 + Ga0059261_4019 0.15 +0.1
4,133,863 + Ga0059261_4019 0.15 -0.1
4,133,863 + Ga0059261_4019 0.15 -1.9
4,133,863 + Ga0059261_4019 0.15 +0.9
4,133,863 + Ga0059261_4019 0.15 +0.9
4,133,863 + Ga0059261_4019 0.15 -1.1
4,133,863 + Ga0059261_4019 0.15 +0.8
4,133,864 - Ga0059261_4019 0.15 +0.3
4,133,864 - Ga0059261_4019 0.15 +0.3
4,133,864 - Ga0059261_4019 0.15 +0.9
4,133,864 - Ga0059261_4019 0.15 -0.4
4,133,864 - Ga0059261_4019 0.15 +1.4
4,133,864 - Ga0059261_4019 0.15 -0.5
4,133,864 - Ga0059261_4019 0.15 +2.4
4,133,864 - Ga0059261_4019 0.15 +0.4
4,133,864 - Ga0059261_4019 0.15 +0.5
4,133,864 - Ga0059261_4019 0.15 +0.8
4,133,864 - Ga0059261_4019 0.15 +0.3
4,133,864 - Ga0059261_4019 0.15 +0.7
4,133,918 + Ga0059261_4019 0.18 +0.3
4,133,918 + Ga0059261_4019 0.18 -0.4
4,133,918 + Ga0059261_4019 0.18 +0.4
4,133,918 + Ga0059261_4019 0.18 +0.2
4,133,918 + Ga0059261_4019 0.18 +0.1
4,133,918 + Ga0059261_4019 0.18 +0.4
4,133,918 + Ga0059261_4019 0.18 +0.3
4,133,918 + Ga0059261_4019 0.18 +0.3
4,133,918 + Ga0059261_4019 0.18 +0.2
4,133,919 - Ga0059261_4019 0.18 +0.6
4,133,919 - Ga0059261_4019 0.18 +0.3
4,133,927 + Ga0059261_4019 0.19 +0.3
4,133,927 + Ga0059261_4019 0.19 +0.9
4,133,927 + Ga0059261_4019 0.19 +1.1
4,133,927 + Ga0059261_4019 0.19 -0.3
4,133,928 - Ga0059261_4019 0.19 +0.3
4,133,928 - Ga0059261_4019 0.19 +0.7
4,134,049 + Ga0059261_4019 0.27 +0.8
4,134,049 + Ga0059261_4019 0.27 +0.8
4,134,049 + Ga0059261_4019 0.27 -0.9
4,134,050 - Ga0059261_4019 0.27 -0.0
4,134,050 - Ga0059261_4019 0.27 +0.8
4,134,050 - Ga0059261_4019 0.27 +0.6
4,134,149 + Ga0059261_4019 0.33 +0.0
4,134,149 + Ga0059261_4019 0.33 +1.0
4,134,150 - Ga0059261_4019 0.33 +0.5
4,134,173 + Ga0059261_4019 0.35 +0.6
4,134,173 + Ga0059261_4019 0.35 +0.1
4,134,173 + Ga0059261_4019 0.35 +0.0
4,134,174 - Ga0059261_4019 0.35 +0.6
4,134,174 - Ga0059261_4019 0.35 -0.0
4,134,174 - Ga0059261_4019 0.35 +0.6
4,134,266 + Ga0059261_4019 0.41 +0.3
4,134,266 + Ga0059261_4019 0.41 +0.9
4,134,266 + Ga0059261_4019 0.41 +0.9
4,134,267 - Ga0059261_4019 0.41 +0.3
4,134,267 - Ga0059261_4019 0.41 -1.1
4,134,267 - Ga0059261_4019 0.41 +1.3
4,134,267 - Ga0059261_4019 0.41 +0.3
4,134,267 - Ga0059261_4019 0.41 +0.4
4,134,267 - Ga0059261_4019 0.41 +0.7
4,134,267 - Ga0059261_4019 0.41 +0.4
4,134,447 + Ga0059261_4019 0.52 +0.1
4,134,464 + Ga0059261_4019 0.53 +0.3
4,134,465 - Ga0059261_4019 0.53 +1.1
4,134,465 - Ga0059261_4019 0.53 -0.4
4,134,465 - Ga0059261_4019 0.53 +0.5
4,134,465 - Ga0059261_4019 0.53 +0.8
4,134,503 + Ga0059261_4019 0.56 +0.1
4,134,503 + Ga0059261_4019 0.56 +0.2
4,134,503 + Ga0059261_4019 0.56 -0.1
4,134,504 - Ga0059261_4019 0.56 +0.2
4,134,504 - Ga0059261_4019 0.56 -0.3
4,134,587 + Ga0059261_4019 0.61 +0.4
4,134,624 + Ga0059261_4019 0.63 +0.2
4,134,624 + Ga0059261_4019 0.63 +0.0
4,134,624 + Ga0059261_4019 0.63 +0.3
4,134,625 - Ga0059261_4019 0.63 +0.5
4,134,625 - Ga0059261_4019 0.63 +0.5
4,134,654 + Ga0059261_4019 0.65 +0.4
4,134,654 + Ga0059261_4019 0.65 +0.6
4,134,714 - Ga0059261_4019 0.69 +0.5
4,134,764 + Ga0059261_4019 0.72 +0.2
4,134,764 + Ga0059261_4019 0.72 +0.2
4,134,764 + Ga0059261_4019 0.72 +0.4
4,134,764 + Ga0059261_4019 0.72 +0.4
4,134,765 - Ga0059261_4019 0.72 +0.8
4,134,765 - Ga0059261_4019 0.72 +1.0
4,134,765 - Ga0059261_4019 0.72 +0.6
4,134,765 - Ga0059261_4019 0.72 -1.1
4,134,917 - Ga0059261_4019 0.82 -0.3
4,134,917 - Ga0059261_4019 0.82 -0.2
4,135,174 + +1.2
4,135,174 + +0.3
4,135,174 + +0.1
4,135,174 + +2.0
4,135,175 - +0.3
4,135,175 - +0.9
4,135,184 + +0.4
4,135,184 + +2.0
4,135,184 + +2.8
4,135,234 - +0.1
4,135,266 + +0.4
4,135,266 + +0.2
4,135,267 - -0.3
4,135,319 - Ga0059261_4020 0.12 +2.3
4,135,433 - Ga0059261_4020 0.26 +0.9
4,135,433 - Ga0059261_4020 0.26 -0.4
4,135,433 - Ga0059261_4020 0.26 +0.4
4,135,542 + Ga0059261_4020 0.40 +1.6
4,135,542 + Ga0059261_4020 0.40 +0.4
4,135,542 + Ga0059261_4020 0.40 +1.4
4,135,543 - Ga0059261_4020 0.40 +0.7
4,135,543 - Ga0059261_4020 0.40 +0.5
4,135,543 - Ga0059261_4020 0.40 +0.0
4,135,543 - Ga0059261_4020 0.40 +1.3
4,135,543 - Ga0059261_4020 0.40 +1.0
4,135,543 - Ga0059261_4020 0.40 +0.6
4,135,543 - Ga0059261_4020 0.40 +0.7
4,135,567 + Ga0059261_4020 0.43 -0.0
4,135,648 + Ga0059261_4020 0.54 +2.6
4,135,648 + Ga0059261_4020 0.54 +0.2
4,135,649 - Ga0059261_4020 0.54 +1.0
4,135,707 + Ga0059261_4020 0.61 +0.7
4,135,707 + Ga0059261_4020 0.61 +0.4
4,135,708 - Ga0059261_4020 0.61 +0.3
4,135,708 - Ga0059261_4020 0.61 +0.5
4,135,717 + Ga0059261_4020 0.62 +1.9
4,135,718 - Ga0059261_4020 0.63 +0.3
4,135,851 + Ga0059261_4020 0.80 +1.2
4,135,851 + Ga0059261_4020 0.80 +1.1
4,135,851 + Ga0059261_4020 0.80 +0.2
4,135,851 + Ga0059261_4020 0.80 +0.2
4,135,851 + Ga0059261_4020 0.80 +0.6
4,135,851 + Ga0059261_4020 0.80 +1.6
4,135,851 + Ga0059261_4020 0.80 +0.6
4,135,851 + Ga0059261_4020 0.80 +0.6
4,135,851 + Ga0059261_4020 0.80 +0.8
4,135,851 + Ga0059261_4020 0.80 +0.4
4,135,851 + Ga0059261_4020 0.80 +1.3
4,135,852 - Ga0059261_4020 0.80 +1.2
4,135,852 - Ga0059261_4020 0.80 +0.6
4,135,852 - Ga0059261_4020 0.80 +0.8
4,135,852 - Ga0059261_4020 0.80 +0.6
4,135,852 - Ga0059261_4020 0.80 +1.6
4,135,852 - Ga0059261_4020 0.80 +0.8
4,135,852 - Ga0059261_4020 0.80 +0.2
4,135,999 + +0.2
4,135,999 + -1.4
4,135,999 + +0.3
4,135,999 + +3.3
4,136,000 - +1.0
4,136,000 - +0.9
4,136,000 - +0.4
4,136,092 - +0.1
4,136,094 - +0.2
4,136,094 - +0.7
4,136,094 - +1.1
4,136,094 - +0.3
4,136,099 + +0.6
4,136,100 - +0.9
4,136,100 - -0.1
4,136,147 + +1.3
4,136,147 + +1.2

Or see this region's nucleotide sequence