Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4013

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4012 and Ga0059261_4013 are separated by 102 nucleotidesGa0059261_4013 and Ga0059261_4014 are separated by 105 nucleotidesGa0059261_4014 and Ga0059261_4015 are separated by 108 nucleotides Ga0059261_4012: Ga0059261_4012 - AMP nucleosidase, at 4,127,325 to 4,128,776 _4012 Ga0059261_4013: Ga0059261_4013 - hypothetical protein, at 4,128,879 to 4,129,118 _4013 Ga0059261_4014: Ga0059261_4014 - Peroxiredoxin, at 4,129,224 to 4,129,703 _4014 Ga0059261_4015: Ga0059261_4015 - Putative transcriptional regulator, at 4,129,812 to 4,130,372 _4015 Position (kb) 4128 4129 4130Strain fitness (log2 ratio) -1 0 1 2 3at 4128.172 kb on + strandat 4128.173 kb on - strand, within Ga0059261_4012at 4128.186 kb on + strandat 4128.186 kb on + strandat 4128.187 kb on - strandat 4128.421 kb on + strand, within Ga0059261_4012at 4128.421 kb on + strand, within Ga0059261_4012at 4128.422 kb on - strandat 4128.472 kb on + strand, within Ga0059261_4012at 4128.473 kb on - strand, within Ga0059261_4012at 4128.473 kb on - strand, within Ga0059261_4012at 4128.509 kb on - strand, within Ga0059261_4012at 4128.698 kb on + strandat 4128.698 kb on + strandat 4128.698 kb on + strandat 4128.733 kb on + strandat 4128.788 kb on - strandat 4128.870 kb on + strandat 4128.870 kb on + strandat 4128.880 kb on + strandat 4128.880 kb on + strandat 4128.881 kb on - strandat 4128.919 kb on + strand, within Ga0059261_4013at 4128.920 kb on - strand, within Ga0059261_4013at 4128.920 kb on - strand, within Ga0059261_4013at 4129.243 kb on + strandat 4129.244 kb on - strandat 4129.664 kb on - strandat 4129.798 kb on + strandat 4129.799 kb on - strandat 4129.799 kb on - strandat 4129.812 kb on - strandat 4129.812 kb on - strandat 4129.827 kb on + strandat 4129.827 kb on + strandat 4129.827 kb on + strandat 4129.828 kb on - strandat 4129.828 kb on - strandat 4129.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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4,128,172 + +0.1
4,128,173 - Ga0059261_4012 0.58 -0.4
4,128,186 + +1.4
4,128,186 + -0.1
4,128,187 - -0.4
4,128,421 + Ga0059261_4012 0.75 +0.1
4,128,421 + Ga0059261_4012 0.75 -0.4
4,128,422 - +1.4
4,128,472 + Ga0059261_4012 0.79 -0.3
4,128,473 - Ga0059261_4012 0.79 +0.2
4,128,473 - Ga0059261_4012 0.79 -0.7
4,128,509 - Ga0059261_4012 0.82 -0.4
4,128,698 + +0.4
4,128,698 + -0.6
4,128,698 + -0.8
4,128,733 + +2.4
4,128,788 - +0.4
4,128,870 + +0.4
4,128,870 + +0.7
4,128,880 + -1.4
4,128,880 + +0.5
4,128,881 - +0.1
4,128,919 + Ga0059261_4013 0.17 +3.0
4,128,920 - Ga0059261_4013 0.17 +0.3
4,128,920 - Ga0059261_4013 0.17 -0.2
4,129,243 + -0.5
4,129,244 - -0.0
4,129,664 - +0.0
4,129,798 + +0.9
4,129,799 - +0.2
4,129,799 - -0.0
4,129,812 - +1.1
4,129,812 - +0.9
4,129,827 + +0.0
4,129,827 + +0.3
4,129,827 + +0.4
4,129,828 - -0.4
4,129,828 - -0.4
4,129,828 - -1.1

Or see this region's nucleotide sequence