Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3658

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3657 and Ga0059261_3658 are separated by 97 nucleotidesGa0059261_3658 and Ga0059261_3659 are separated by 9 nucleotidesGa0059261_3659 and Ga0059261_3660 overlap by 1 nucleotides Ga0059261_3657: Ga0059261_3657 - His Kinase A (phospho-acceptor) domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, at 3,771,765 to 3,772,970 _3657 Ga0059261_3658: Ga0059261_3658 - hypothetical protein, at 3,773,068 to 3,773,481 _3658 Ga0059261_3659: Ga0059261_3659 - PqqD family protein, HPr-rel-A system, at 3,773,491 to 3,773,760 _3659 Ga0059261_3660: Ga0059261_3660 - HprK-related kinase A, at 3,773,760 to 3,774,623 _3660 Position (kb) 3773 3774Strain fitness (log2 ratio) -2 -1 0 1at 3772.072 kb on + strand, within Ga0059261_3657at 3772.072 kb on + strand, within Ga0059261_3657at 3772.073 kb on - strand, within Ga0059261_3657at 3772.073 kb on - strand, within Ga0059261_3657at 3772.094 kb on + strand, within Ga0059261_3657at 3772.094 kb on + strand, within Ga0059261_3657at 3772.144 kb on - strand, within Ga0059261_3657at 3772.166 kb on + strand, within Ga0059261_3657at 3772.167 kb on - strand, within Ga0059261_3657at 3772.167 kb on - strand, within Ga0059261_3657at 3772.167 kb on - strand, within Ga0059261_3657at 3772.167 kb on - strand, within Ga0059261_3657at 3772.259 kb on - strand, within Ga0059261_3657at 3772.425 kb on + strand, within Ga0059261_3657at 3772.425 kb on + strand, within Ga0059261_3657at 3772.426 kb on - strand, within Ga0059261_3657at 3772.508 kb on + strand, within Ga0059261_3657at 3772.508 kb on + strand, within Ga0059261_3657at 3772.508 kb on + strand, within Ga0059261_3657at 3772.509 kb on - strand, within Ga0059261_3657at 3772.509 kb on - strand, within Ga0059261_3657at 3772.534 kb on - strand, within Ga0059261_3657at 3772.668 kb on + strand, within Ga0059261_3657at 3772.668 kb on + strand, within Ga0059261_3657at 3772.668 kb on + strand, within Ga0059261_3657at 3772.668 kb on + strandat 3772.668 kb on + strand, within Ga0059261_3657at 3772.669 kb on - strand, within Ga0059261_3657at 3772.669 kb on - strand, within Ga0059261_3657at 3772.669 kb on - strand, within Ga0059261_3657at 3772.670 kb on + strand, within Ga0059261_3657at 3772.670 kb on + strandat 3772.670 kb on + strand, within Ga0059261_3657at 3772.671 kb on - strand, within Ga0059261_3657at 3772.671 kb on - strand, within Ga0059261_3657at 3772.671 kb on - strandat 3772.671 kb on - strand, within Ga0059261_3657at 3772.671 kb on - strand, within Ga0059261_3657at 3772.671 kb on - strand, within Ga0059261_3657at 3772.671 kb on - strand, within Ga0059261_3657at 3772.671 kb on - strand, within Ga0059261_3657at 3772.671 kb on - strand, within Ga0059261_3657at 3772.671 kb on - strand, within Ga0059261_3657at 3772.671 kb on - strandat 3772.671 kb on - strand, within Ga0059261_3657at 3772.734 kb on + strand, within Ga0059261_3657at 3772.851 kb on - strandat 3772.971 kb on - strandat 3772.981 kb on + strandat 3772.982 kb on - strandat 3772.982 kb on - strandat 3773.062 kb on + strandat 3773.062 kb on + strandat 3773.062 kb on + strandat 3773.062 kb on + strandat 3773.062 kb on + strandat 3773.062 kb on + strandat 3773.063 kb on - strandat 3773.063 kb on - strandat 3773.091 kb on + strandat 3773.257 kb on + strand, within Ga0059261_3658at 3773.257 kb on + strand, within Ga0059261_3658at 3773.257 kb on + strand, within Ga0059261_3658at 3773.257 kb on + strand, within Ga0059261_3658at 3773.257 kb on + strandat 3773.257 kb on + strandat 3773.257 kb on + strand, within Ga0059261_3658at 3773.258 kb on - strand, within Ga0059261_3658at 3773.258 kb on - strand, within Ga0059261_3658at 3773.258 kb on - strand, within Ga0059261_3658at 3773.258 kb on - strand, within Ga0059261_3658at 3773.258 kb on - strand, within Ga0059261_3658at 3773.258 kb on - strand, within Ga0059261_3658at 3773.258 kb on - strand, within Ga0059261_3658at 3773.258 kb on - strand, within Ga0059261_3658at 3773.258 kb on - strand, within Ga0059261_3658at 3773.258 kb on - strand, within Ga0059261_3658at 3773.258 kb on - strand, within Ga0059261_3658at 3773.258 kb on - strand, within Ga0059261_3658at 3773.258 kb on - strand, within Ga0059261_3658at 3773.259 kb on + strand, within Ga0059261_3658at 3773.260 kb on - strand, within Ga0059261_3658at 3773.260 kb on - strand, within Ga0059261_3658at 3773.260 kb on - strand, within Ga0059261_3658at 3773.401 kb on + strand, within Ga0059261_3658at 3773.401 kb on + strand, within Ga0059261_3658at 3773.401 kb on + strand, within Ga0059261_3658at 3773.402 kb on - strand, within Ga0059261_3658at 3773.402 kb on - strand, within Ga0059261_3658at 3773.402 kb on - strand, within Ga0059261_3658at 3773.403 kb on + strand, within Ga0059261_3658at 3773.403 kb on + strand, within Ga0059261_3658at 3773.403 kb on + strand, within Ga0059261_3658at 3773.403 kb on + strand, within Ga0059261_3658at 3773.404 kb on - strand, within Ga0059261_3658at 3773.404 kb on - strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.410 kb on + strand, within Ga0059261_3658at 3773.411 kb on - strand, within Ga0059261_3658at 3773.411 kb on - strand, within Ga0059261_3658at 3773.411 kb on - strand, within Ga0059261_3658at 3773.411 kb on - strand, within Ga0059261_3658at 3773.411 kb on - strand, within Ga0059261_3658at 3773.411 kb on - strand, within Ga0059261_3658at 3773.411 kb on - strand, within Ga0059261_3658at 3773.411 kb on - strand, within Ga0059261_3658at 3773.411 kb on - strand, within Ga0059261_3658at 3773.411 kb on - strand, within Ga0059261_3658at 3773.411 kb on - strand, within Ga0059261_3658at 3773.411 kb on - strand, within Ga0059261_3658at 3773.411 kb on - strand, within Ga0059261_3658at 3773.411 kb on - strand, within Ga0059261_3658at 3773.412 kb on + strand, within Ga0059261_3658at 3773.413 kb on - strand, within Ga0059261_3658at 3773.413 kb on - strand, within Ga0059261_3658at 3773.446 kb on - strandat 3773.446 kb on - strandat 3773.446 kb on - strandat 3773.535 kb on - strand, within Ga0059261_3659at 3773.535 kb on - strand, within Ga0059261_3659at 3773.560 kb on + strand, within Ga0059261_3659at 3773.560 kb on + strand, within Ga0059261_3659at 3773.561 kb on - strand, within Ga0059261_3659at 3773.561 kb on - strand, within Ga0059261_3659at 3773.561 kb on - strand, within Ga0059261_3659at 3773.640 kb on + strand, within Ga0059261_3659at 3773.640 kb on + strand, within Ga0059261_3659at 3773.641 kb on - strand, within Ga0059261_3659at 3773.850 kb on + strand, within Ga0059261_3660at 3773.850 kb on + strand, within Ga0059261_3660at 3773.851 kb on - strand, within Ga0059261_3660at 3773.851 kb on - strand, within Ga0059261_3660at 3773.851 kb on - strand, within Ga0059261_3660at 3773.851 kb on - strand, within Ga0059261_3660at 3773.860 kb on - strand, within Ga0059261_3660at 3773.860 kb on - strand, within Ga0059261_3660at 3773.967 kb on - strand, within Ga0059261_3660at 3774.131 kb on + strand, within Ga0059261_3660at 3774.132 kb on - strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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3,772,072 + Ga0059261_3657 0.25 +0.4
3,772,072 + Ga0059261_3657 0.25 +0.9
3,772,073 - Ga0059261_3657 0.26 +0.4
3,772,073 - Ga0059261_3657 0.26 +1.3
3,772,094 + Ga0059261_3657 0.27 -0.1
3,772,094 + Ga0059261_3657 0.27 +1.6
3,772,144 - Ga0059261_3657 0.31 +0.6
3,772,166 + Ga0059261_3657 0.33 +0.4
3,772,167 - Ga0059261_3657 0.33 -1.3
3,772,167 - Ga0059261_3657 0.33 +0.3
3,772,167 - Ga0059261_3657 0.33 +0.4
3,772,167 - Ga0059261_3657 0.33 -0.3
3,772,259 - Ga0059261_3657 0.41 +0.6
3,772,425 + Ga0059261_3657 0.55 -0.2
3,772,425 + Ga0059261_3657 0.55 -1.3
3,772,426 - Ga0059261_3657 0.55 +1.7
3,772,508 + Ga0059261_3657 0.62 -0.4
3,772,508 + Ga0059261_3657 0.62 -1.2
3,772,508 + Ga0059261_3657 0.62 -0.7
3,772,509 - Ga0059261_3657 0.62 +0.3
3,772,509 - Ga0059261_3657 0.62 +0.3
3,772,534 - Ga0059261_3657 0.64 +0.5
3,772,668 + Ga0059261_3657 0.75 +0.8
3,772,668 + Ga0059261_3657 0.75 -0.6
3,772,668 + Ga0059261_3657 0.75 -0.7
3,772,668 + +1.4
3,772,668 + Ga0059261_3657 0.75 +0.3
3,772,669 - Ga0059261_3657 0.75 +0.9
3,772,669 - Ga0059261_3657 0.75 +0.1
3,772,669 - Ga0059261_3657 0.75 -0.3
3,772,670 + Ga0059261_3657 0.75 +0.5
3,772,670 + +1.4
3,772,670 + Ga0059261_3657 0.75 +0.6
3,772,671 - Ga0059261_3657 0.75 -2.0
3,772,671 - Ga0059261_3657 0.75 +1.2
3,772,671 - -0.9
3,772,671 - Ga0059261_3657 0.75 +1.1
3,772,671 - Ga0059261_3657 0.75 +1.4
3,772,671 - Ga0059261_3657 0.75 +0.1
3,772,671 - Ga0059261_3657 0.75 +1.0
3,772,671 - Ga0059261_3657 0.75 +0.3
3,772,671 - Ga0059261_3657 0.75 +0.4
3,772,671 - Ga0059261_3657 0.75 +1.0
3,772,671 - +0.4
3,772,671 - Ga0059261_3657 0.75 -0.1
3,772,734 + Ga0059261_3657 0.80 +0.0
3,772,851 - -0.2
3,772,971 - +0.7
3,772,981 + -1.9
3,772,982 - -0.3
3,772,982 - +0.1
3,773,062 + -0.5
3,773,062 + +0.9
3,773,062 + +0.1
3,773,062 + -0.2
3,773,062 + +0.3
3,773,062 + -0.3
3,773,063 - +1.4
3,773,063 - +0.7
3,773,091 + -0.1
3,773,257 + Ga0059261_3658 0.46 +0.6
3,773,257 + Ga0059261_3658 0.46 +1.2
3,773,257 + Ga0059261_3658 0.46 -0.0
3,773,257 + Ga0059261_3658 0.46 -0.0
3,773,257 + -1.2
3,773,257 + +0.4
3,773,257 + Ga0059261_3658 0.46 -0.9
3,773,258 - Ga0059261_3658 0.46 +1.4
3,773,258 - Ga0059261_3658 0.46 +0.5
3,773,258 - Ga0059261_3658 0.46 -0.2
3,773,258 - Ga0059261_3658 0.46 -0.0
3,773,258 - Ga0059261_3658 0.46 +0.3
3,773,258 - Ga0059261_3658 0.46 -0.1
3,773,258 - Ga0059261_3658 0.46 +0.4
3,773,258 - Ga0059261_3658 0.46 -0.1
3,773,258 - Ga0059261_3658 0.46 +0.7
3,773,258 - Ga0059261_3658 0.46 +0.4
3,773,258 - Ga0059261_3658 0.46 +0.0
3,773,258 - Ga0059261_3658 0.46 +0.8
3,773,258 - Ga0059261_3658 0.46 +0.8
3,773,259 + Ga0059261_3658 0.46 +0.1
3,773,260 - Ga0059261_3658 0.46 +1.1
3,773,260 - Ga0059261_3658 0.46 +1.0
3,773,260 - Ga0059261_3658 0.46 +1.4
3,773,401 + Ga0059261_3658 0.80 -0.1
3,773,401 + Ga0059261_3658 0.80 -0.8
3,773,401 + Ga0059261_3658 0.80 -0.4
3,773,402 - Ga0059261_3658 0.81 +0.2
3,773,402 - Ga0059261_3658 0.81 +0.6
3,773,402 - Ga0059261_3658 0.81 -0.1
3,773,403 + Ga0059261_3658 0.81 +0.5
3,773,403 + Ga0059261_3658 0.81 +0.4
3,773,403 + Ga0059261_3658 0.81 +1.3
3,773,403 + Ga0059261_3658 0.81 +0.7
3,773,404 - Ga0059261_3658 0.81 +1.2
3,773,404 - Ga0059261_3658 0.81 +0.1
3,773,410 + Ga0059261_3658 0.83 -0.3
3,773,410 + Ga0059261_3658 0.83 +0.7
3,773,410 + Ga0059261_3658 0.83 +0.2
3,773,410 + Ga0059261_3658 0.83 -0.7
3,773,410 + Ga0059261_3658 0.83 +1.1
3,773,410 + Ga0059261_3658 0.83 +0.7
3,773,410 + Ga0059261_3658 0.83 +0.4
3,773,410 + Ga0059261_3658 0.83 +0.1
3,773,410 + Ga0059261_3658 0.83 +0.9
3,773,410 + Ga0059261_3658 0.83 -2.1
3,773,410 + Ga0059261_3658 0.83 +1.1
3,773,410 + Ga0059261_3658 0.83 +0.9
3,773,410 + Ga0059261_3658 0.83 +0.2
3,773,410 + Ga0059261_3658 0.83 -0.5
3,773,410 + Ga0059261_3658 0.83 +0.2
3,773,410 + Ga0059261_3658 0.83 -0.2
3,773,410 + Ga0059261_3658 0.83 +0.5
3,773,410 + Ga0059261_3658 0.83 -0.2
3,773,410 + Ga0059261_3658 0.83 +0.6
3,773,410 + Ga0059261_3658 0.83 +0.6
3,773,410 + Ga0059261_3658 0.83 +0.9
3,773,411 - Ga0059261_3658 0.83 +0.8
3,773,411 - Ga0059261_3658 0.83 +0.7
3,773,411 - Ga0059261_3658 0.83 +0.4
3,773,411 - Ga0059261_3658 0.83 +0.4
3,773,411 - Ga0059261_3658 0.83 +0.6
3,773,411 - Ga0059261_3658 0.83 +0.5
3,773,411 - Ga0059261_3658 0.83 +1.0
3,773,411 - Ga0059261_3658 0.83 +0.3
3,773,411 - Ga0059261_3658 0.83 -0.4
3,773,411 - Ga0059261_3658 0.83 -0.1
3,773,411 - Ga0059261_3658 0.83 -0.3
3,773,411 - Ga0059261_3658 0.83 -0.4
3,773,411 - Ga0059261_3658 0.83 +0.0
3,773,411 - Ga0059261_3658 0.83 -0.6
3,773,412 + Ga0059261_3658 0.83 -0.3
3,773,413 - Ga0059261_3658 0.83 +0.1
3,773,413 - Ga0059261_3658 0.83 +0.2
3,773,446 - -0.1
3,773,446 - -0.5
3,773,446 - -0.0
3,773,535 - Ga0059261_3659 0.16 +0.5
3,773,535 - Ga0059261_3659 0.16 +0.0
3,773,560 + Ga0059261_3659 0.26 +0.0
3,773,560 + Ga0059261_3659 0.26 +0.2
3,773,561 - Ga0059261_3659 0.26 +0.2
3,773,561 - Ga0059261_3659 0.26 +0.5
3,773,561 - Ga0059261_3659 0.26 +0.0
3,773,640 + Ga0059261_3659 0.55 -0.0
3,773,640 + Ga0059261_3659 0.55 -0.1
3,773,641 - Ga0059261_3659 0.56 +0.5
3,773,850 + Ga0059261_3660 0.10 -0.2
3,773,850 + Ga0059261_3660 0.10 +0.4
3,773,851 - Ga0059261_3660 0.11 +0.7
3,773,851 - Ga0059261_3660 0.11 +0.6
3,773,851 - Ga0059261_3660 0.11 -0.2
3,773,851 - Ga0059261_3660 0.11 +0.4
3,773,860 - Ga0059261_3660 0.12 -1.3
3,773,860 - Ga0059261_3660 0.12 -0.2
3,773,967 - Ga0059261_3660 0.24 -0.2
3,774,131 + Ga0059261_3660 0.43 +0.6
3,774,132 - Ga0059261_3660 0.43 +0.1
3,774,220 + Ga0059261_3660 0.53 -0.0
3,774,220 + Ga0059261_3660 0.53 +0.2
3,774,220 + Ga0059261_3660 0.53 -0.0
3,774,220 + Ga0059261_3660 0.53 +0.6
3,774,220 + Ga0059261_3660 0.53 +0.4
3,774,220 + Ga0059261_3660 0.53 +0.4
3,774,220 + Ga0059261_3660 0.53 +0.4
3,774,220 + Ga0059261_3660 0.53 +0.5
3,774,220 + Ga0059261_3660 0.53 -0.1
3,774,220 + Ga0059261_3660 0.53 +0.1
3,774,221 - Ga0059261_3660 0.53 +0.0
3,774,221 - Ga0059261_3660 0.53 +0.0
3,774,221 - Ga0059261_3660 0.53 -0.3
3,774,221 - Ga0059261_3660 0.53 +0.4
3,774,221 - Ga0059261_3660 0.53 +0.2
3,774,221 - Ga0059261_3660 0.53 -0.2
3,774,221 - Ga0059261_3660 0.53 +0.2
3,774,221 - Ga0059261_3660 0.53 +0.6
3,774,221 - Ga0059261_3660 0.53 +0.6
3,774,221 - Ga0059261_3660 0.53 +0.6
3,774,221 - Ga0059261_3660 0.53 +0.4
3,774,221 - Ga0059261_3660 0.53 +0.1

Or see this region's nucleotide sequence