Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3579

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3577 and Ga0059261_3578 overlap by 22 nucleotidesGa0059261_3578 and Ga0059261_3579 overlap by 37 nucleotidesGa0059261_3579 and Ga0059261_3580 overlap by 1 nucleotidesGa0059261_3580 and Ga0059261_3581 overlap by 4 nucleotides Ga0059261_3577: Ga0059261_3577 - Uncharacterized conserved protein, at 3,702,365 to 3,702,733 _3577 Ga0059261_3578: Ga0059261_3578 - Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2, at 3,702,712 to 3,703,500 _3578 Ga0059261_3579: Ga0059261_3579 - hypothetical protein, at 3,703,464 to 3,703,883 _3579 Ga0059261_3580: Ga0059261_3580 - deoxyuridine 5'-triphosphate nucleotidohydrolase (dut), at 3,703,883 to 3,704,332 _3580 Ga0059261_3581: Ga0059261_3581 - Alpha/beta hydrolase family, at 3,704,329 to 3,705,147 _3581 Position (kb) 3703 3704Strain fitness (log2 ratio) -1 0 1 2at 3702.618 kb on + strand, within Ga0059261_3577at 3702.618 kb on + strand, within Ga0059261_3577at 3702.618 kb on + strand, within Ga0059261_3577at 3702.618 kb on + strand, within Ga0059261_3577at 3702.618 kb on + strand, within Ga0059261_3577at 3702.618 kb on + strand, within Ga0059261_3577at 3702.618 kb on + strand, within Ga0059261_3577at 3702.619 kb on - strand, within Ga0059261_3577at 3702.619 kb on - strand, within Ga0059261_3577at 3703.568 kb on - strand, within Ga0059261_3579at 3703.568 kb on - strandat 3703.568 kb on - strand, within Ga0059261_3579at 3703.614 kb on + strand, within Ga0059261_3579at 3703.615 kb on - strand, within Ga0059261_3579at 3703.724 kb on - strand, within Ga0059261_3579at 3703.724 kb on - strand, within Ga0059261_3579at 3703.724 kb on - strand, within Ga0059261_3579at 3703.724 kb on - strand, within Ga0059261_3579at 3703.724 kb on - strand, within Ga0059261_3579at 3703.724 kb on - strand, within Ga0059261_3579at 3703.724 kb on - strand, within Ga0059261_3579at 3703.861 kb on - strandat 3704.469 kb on - strand, within Ga0059261_3581at 3704.469 kb on - strand, within Ga0059261_3581at 3704.625 kb on - strand, within Ga0059261_3581at 3704.625 kb on - strand, within Ga0059261_3581at 3704.625 kb on - strand, within Ga0059261_3581at 3704.625 kb on - strand, within Ga0059261_3581at 3704.625 kb on - strand, within Ga0059261_3581at 3704.625 kb on - strand, within Ga0059261_3581at 3704.625 kb on - strand, within Ga0059261_3581at 3704.625 kb on - strand, within Ga0059261_3581at 3704.820 kb on - strand, within Ga0059261_3581at 3704.820 kb on - strand, within Ga0059261_3581at 3704.820 kb on - strand, within Ga0059261_3581at 3704.820 kb on - strand, within Ga0059261_3581at 3704.820 kb on - strand, within Ga0059261_3581at 3704.820 kb on - strand, within Ga0059261_3581at 3704.820 kb on - strand, within Ga0059261_3581at 3704.820 kb on - strand, within Ga0059261_3581

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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3,702,618 + Ga0059261_3577 0.69 +0.1
3,702,618 + Ga0059261_3577 0.69 +0.0
3,702,618 + Ga0059261_3577 0.69 -0.0
3,702,618 + Ga0059261_3577 0.69 +1.0
3,702,618 + Ga0059261_3577 0.69 -0.1
3,702,618 + Ga0059261_3577 0.69 -0.4
3,702,618 + Ga0059261_3577 0.69 +0.0
3,702,619 - Ga0059261_3577 0.69 -0.3
3,702,619 - Ga0059261_3577 0.69 -0.3
3,703,568 - Ga0059261_3579 0.25 +1.9
3,703,568 - +0.1
3,703,568 - Ga0059261_3579 0.25 +1.0
3,703,614 + Ga0059261_3579 0.36 -0.9
3,703,615 - Ga0059261_3579 0.36 +1.2
3,703,724 - Ga0059261_3579 0.62 +1.3
3,703,724 - Ga0059261_3579 0.62 +1.3
3,703,724 - Ga0059261_3579 0.62 +1.5
3,703,724 - Ga0059261_3579 0.62 +1.7
3,703,724 - Ga0059261_3579 0.62 +0.8
3,703,724 - Ga0059261_3579 0.62 +1.7
3,703,724 - Ga0059261_3579 0.62 +1.2
3,703,861 - +1.0
3,704,469 - Ga0059261_3581 0.17 -0.8
3,704,469 - Ga0059261_3581 0.17 -1.3
3,704,625 - Ga0059261_3581 0.36 +0.0
3,704,625 - Ga0059261_3581 0.36 +1.3
3,704,625 - Ga0059261_3581 0.36 -0.2
3,704,625 - Ga0059261_3581 0.36 -0.3
3,704,625 - Ga0059261_3581 0.36 +0.3
3,704,625 - Ga0059261_3581 0.36 +1.7
3,704,625 - Ga0059261_3581 0.36 +0.4
3,704,625 - Ga0059261_3581 0.36 +1.4
3,704,820 - Ga0059261_3581 0.60 +0.1
3,704,820 - Ga0059261_3581 0.60 -0.1
3,704,820 - Ga0059261_3581 0.60 -1.0
3,704,820 - Ga0059261_3581 0.60 +1.0
3,704,820 - Ga0059261_3581 0.60 +1.5
3,704,820 - Ga0059261_3581 0.60 +1.4
3,704,820 - Ga0059261_3581 0.60 +0.8
3,704,820 - Ga0059261_3581 0.60 +0.9

Or see this region's nucleotide sequence