Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2730

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2729 and Ga0059261_2730 overlap by 4 nucleotidesGa0059261_2730 and Ga0059261_2731 overlap by 4 nucleotidesGa0059261_2731 and Ga0059261_2732 are separated by 50 nucleotides Ga0059261_2729: Ga0059261_2729 - threonyl-tRNA synthetase (EC 6.1.1.3), at 2,840,852 to 2,842,843 _2729 Ga0059261_2730: Ga0059261_2730 - Sortase and related acyltransferases, at 2,842,840 to 2,843,283 _2730 Ga0059261_2731: Ga0059261_2731 - transcriptional regulator, AraC family, at 2,843,280 to 2,843,933 _2731 Ga0059261_2732: Ga0059261_2732 - hypothetical protein, at 2,843,984 to 2,845,129 _2732 Position (kb) 2842 2843 2844Strain fitness (log2 ratio) -1 0 1at 2843.183 kb on - strand, within Ga0059261_2730at 2843.183 kb on - strand, within Ga0059261_2730at 2843.343 kb on + strandat 2843.343 kb on + strandat 2843.344 kb on - strandat 2843.344 kb on - strandat 2843.344 kb on - strandat 2843.344 kb on - strandat 2843.344 kb on - strandat 2843.371 kb on - strand, within Ga0059261_2731at 2843.652 kb on - strand, within Ga0059261_2731at 2843.745 kb on + strand, within Ga0059261_2731at 2843.746 kb on - strand, within Ga0059261_2731at 2843.746 kb on - strand, within Ga0059261_2731at 2843.746 kb on - strand, within Ga0059261_2731at 2843.746 kb on - strand, within Ga0059261_2731at 2843.746 kb on - strand, within Ga0059261_2731at 2843.931 kb on + strandat 2843.974 kb on + strandat 2843.974 kb on + strandat 2843.975 kb on - strandat 2844.152 kb on + strand, within Ga0059261_2732at 2844.152 kb on + strand, within Ga0059261_2732at 2844.153 kb on - strandat 2844.153 kb on - strand, within Ga0059261_2732at 2844.161 kb on + strand, within Ga0059261_2732at 2844.161 kb on + strand, within Ga0059261_2732at 2844.161 kb on + strand, within Ga0059261_2732at 2844.161 kb on + strand, within Ga0059261_2732at 2844.161 kb on + strand, within Ga0059261_2732at 2844.161 kb on + strand, within Ga0059261_2732at 2844.161 kb on + strand, within Ga0059261_2732at 2844.161 kb on + strand, within Ga0059261_2732at 2844.161 kb on + strand, within Ga0059261_2732at 2844.161 kb on + strand, within Ga0059261_2732at 2844.161 kb on + strand, within Ga0059261_2732at 2844.161 kb on + strand, within Ga0059261_2732at 2844.161 kb on + strand, within Ga0059261_2732at 2844.162 kb on - strand, within Ga0059261_2732at 2844.162 kb on - strand, within Ga0059261_2732at 2844.162 kb on - strand, within Ga0059261_2732at 2844.162 kb on - strand, within Ga0059261_2732at 2844.162 kb on - strand, within Ga0059261_2732at 2844.162 kb on - strand, within Ga0059261_2732at 2844.162 kb on - strand, within Ga0059261_2732at 2844.162 kb on - strand, within Ga0059261_2732at 2844.164 kb on + strand, within Ga0059261_2732at 2844.164 kb on + strand, within Ga0059261_2732at 2844.164 kb on + strand, within Ga0059261_2732at 2844.164 kb on + strand, within Ga0059261_2732at 2844.164 kb on + strand, within Ga0059261_2732at 2844.164 kb on + strand, within Ga0059261_2732at 2844.164 kb on + strand, within Ga0059261_2732at 2844.164 kb on + strand, within Ga0059261_2732at 2844.164 kb on + strand, within Ga0059261_2732at 2844.165 kb on - strand, within Ga0059261_2732at 2844.165 kb on - strand, within Ga0059261_2732at 2844.165 kb on - strand, within Ga0059261_2732at 2844.165 kb on - strand, within Ga0059261_2732at 2844.165 kb on - strand, within Ga0059261_2732at 2844.165 kb on - strand, within Ga0059261_2732at 2844.165 kb on - strandat 2844.254 kb on + strand, within Ga0059261_2732at 2844.254 kb on + strand, within Ga0059261_2732at 2844.254 kb on + strand, within Ga0059261_2732at 2844.255 kb on - strand, within Ga0059261_2732at 2844.255 kb on - strand, within Ga0059261_2732at 2844.255 kb on - strand, within Ga0059261_2732at 2844.255 kb on - strand, within Ga0059261_2732at 2844.255 kb on - strand, within Ga0059261_2732

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,843,183 - Ga0059261_2730 0.77 -0.2
2,843,183 - Ga0059261_2730 0.77 +0.9
2,843,343 + +1.1
2,843,343 + -0.5
2,843,344 - -0.5
2,843,344 - +0.2
2,843,344 - -0.2
2,843,344 - -0.0
2,843,344 - -0.3
2,843,371 - Ga0059261_2731 0.14 -1.1
2,843,652 - Ga0059261_2731 0.57 -0.4
2,843,745 + Ga0059261_2731 0.71 -0.0
2,843,746 - Ga0059261_2731 0.71 -1.2
2,843,746 - Ga0059261_2731 0.71 -0.1
2,843,746 - Ga0059261_2731 0.71 +0.4
2,843,746 - Ga0059261_2731 0.71 +0.1
2,843,746 - Ga0059261_2731 0.71 -0.2
2,843,931 + +0.3
2,843,974 + +0.3
2,843,974 + +1.3
2,843,975 - +0.1
2,844,152 + Ga0059261_2732 0.15 +0.3
2,844,152 + Ga0059261_2732 0.15 +0.1
2,844,153 - +0.3
2,844,153 - Ga0059261_2732 0.15 -0.3
2,844,161 + Ga0059261_2732 0.15 +1.0
2,844,161 + Ga0059261_2732 0.15 -0.3
2,844,161 + Ga0059261_2732 0.15 -0.9
2,844,161 + Ga0059261_2732 0.15 +0.4
2,844,161 + Ga0059261_2732 0.15 +0.5
2,844,161 + Ga0059261_2732 0.15 +0.1
2,844,161 + Ga0059261_2732 0.15 +1.0
2,844,161 + Ga0059261_2732 0.15 -0.1
2,844,161 + Ga0059261_2732 0.15 -0.5
2,844,161 + Ga0059261_2732 0.15 -0.1
2,844,161 + Ga0059261_2732 0.15 +0.3
2,844,161 + Ga0059261_2732 0.15 -0.2
2,844,161 + Ga0059261_2732 0.15 -0.2
2,844,162 - Ga0059261_2732 0.16 +0.0
2,844,162 - Ga0059261_2732 0.16 -0.3
2,844,162 - Ga0059261_2732 0.16 +0.4
2,844,162 - Ga0059261_2732 0.16 -0.3
2,844,162 - Ga0059261_2732 0.16 +0.4
2,844,162 - Ga0059261_2732 0.16 +0.9
2,844,162 - Ga0059261_2732 0.16 -0.2
2,844,162 - Ga0059261_2732 0.16 -0.3
2,844,164 + Ga0059261_2732 0.16 -0.4
2,844,164 + Ga0059261_2732 0.16 -0.5
2,844,164 + Ga0059261_2732 0.16 -0.2
2,844,164 + Ga0059261_2732 0.16 +0.5
2,844,164 + Ga0059261_2732 0.16 +0.9
2,844,164 + Ga0059261_2732 0.16 -0.1
2,844,164 + Ga0059261_2732 0.16 +0.2
2,844,164 + Ga0059261_2732 0.16 +0.3
2,844,164 + Ga0059261_2732 0.16 -0.6
2,844,165 - Ga0059261_2732 0.16 +0.6
2,844,165 - Ga0059261_2732 0.16 +0.9
2,844,165 - Ga0059261_2732 0.16 -0.3
2,844,165 - Ga0059261_2732 0.16 +0.1
2,844,165 - Ga0059261_2732 0.16 +1.0
2,844,165 - Ga0059261_2732 0.16 +0.4
2,844,165 - +1.6
2,844,254 + Ga0059261_2732 0.24 -0.2
2,844,254 + Ga0059261_2732 0.24 +0.3
2,844,254 + Ga0059261_2732 0.24 +0.1
2,844,255 - Ga0059261_2732 0.24 -0.5
2,844,255 - Ga0059261_2732 0.24 -0.3
2,844,255 - Ga0059261_2732 0.24 -0.0
2,844,255 - Ga0059261_2732 0.24 +0.1
2,844,255 - Ga0059261_2732 0.24 -0.0

Or see this region's nucleotide sequence