Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2682

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2679 and Ga0059261_2680 are separated by 12 nucleotidesGa0059261_2680 and Ga0059261_2681 are separated by 188 nucleotidesGa0059261_2681 and Ga0059261_2682 are separated by 103 nucleotidesGa0059261_2682 and Ga0059261_2683 are separated by 26 nucleotidesGa0059261_2683 and Ga0059261_2684 overlap by 4 nucleotidesGa0059261_2684 and Ga0059261_2685 overlap by 4 nucleotides Ga0059261_2679: Ga0059261_2679 - Predicted membrane protein, at 2,791,549 to 2,792,115 _2679 Ga0059261_2680: Ga0059261_2680 - hypothetical protein, at 2,792,128 to 2,792,445 _2680 Ga0059261_2681: Ga0059261_2681 - ribosomal protein L33, bacterial type, at 2,792,634 to 2,792,801 _2681 Ga0059261_2682: Ga0059261_2682 - Response regulator receiver domain, at 2,792,905 to 2,793,282 _2682 Ga0059261_2683: Ga0059261_2683 - Protein of unknown function (DUF3572), at 2,793,309 to 2,793,581 _2683 Ga0059261_2684: Ga0059261_2684 - hypothetical protein, at 2,793,578 to 2,794,225 _2684 Ga0059261_2685: Ga0059261_2685 - Putative translation initiation inhibitor, yjgF family, at 2,794,222 to 2,794,680 _2685 Position (kb) 2792 2793 2794Strain fitness (log2 ratio) -2 -1 0 1 2at 2792.126 kb on + strandat 2792.126 kb on + strandat 2792.126 kb on + strandat 2792.126 kb on + strandat 2792.126 kb on + strandat 2792.127 kb on - strandat 2792.127 kb on - strandat 2792.127 kb on - strandat 2792.161 kb on - strand, within Ga0059261_2680at 2792.161 kb on - strand, within Ga0059261_2680at 2792.813 kb on + strandat 2792.813 kb on + strandat 2792.814 kb on - strandat 2792.883 kb on + strandat 2792.883 kb on + strandat 2792.884 kb on - strandat 2792.884 kb on - strandat 2792.884 kb on - strandat 2792.884 kb on - strandat 2792.884 kb on - strandat 2792.902 kb on + strandat 2792.902 kb on + strandat 2792.902 kb on + strandat 2792.902 kb on + strandat 2792.903 kb on - strandat 2792.903 kb on - strandat 2792.906 kb on + strandat 2792.963 kb on + strand, within Ga0059261_2682at 2792.963 kb on + strand, within Ga0059261_2682at 2792.963 kb on + strand, within Ga0059261_2682at 2792.963 kb on + strand, within Ga0059261_2682at 2792.963 kb on + strand, within Ga0059261_2682at 2792.963 kb on + strand, within Ga0059261_2682at 2792.963 kb on + strand, within Ga0059261_2682at 2792.964 kb on - strand, within Ga0059261_2682at 2792.964 kb on - strand, within Ga0059261_2682at 2792.964 kb on - strand, within Ga0059261_2682at 2792.964 kb on - strand, within Ga0059261_2682at 2792.964 kb on - strand, within Ga0059261_2682at 2792.964 kb on - strand, within Ga0059261_2682at 2792.964 kb on - strand, within Ga0059261_2682at 2792.964 kb on - strand, within Ga0059261_2682at 2792.964 kb on - strand, within Ga0059261_2682at 2792.964 kb on - strand, within Ga0059261_2682at 2792.964 kb on - strand, within Ga0059261_2682at 2793.014 kb on + strand, within Ga0059261_2682at 2793.014 kb on + strand, within Ga0059261_2682at 2793.015 kb on - strand, within Ga0059261_2682at 2793.111 kb on - strand, within Ga0059261_2682at 2793.234 kb on - strand, within Ga0059261_2682at 2793.276 kb on + strandat 2793.276 kb on + strandat 2793.276 kb on + strandat 2793.276 kb on + strandat 2793.277 kb on - strandat 2793.277 kb on - strandat 2793.277 kb on - strandat 2793.277 kb on - strandat 2793.277 kb on - strandat 2793.303 kb on + strandat 2793.303 kb on + strandat 2793.304 kb on - strandat 2793.492 kb on + strand, within Ga0059261_2683at 2793.492 kb on + strand, within Ga0059261_2683at 2793.492 kb on + strand, within Ga0059261_2683at 2793.492 kb on + strand, within Ga0059261_2683at 2793.492 kb on + strand, within Ga0059261_2683at 2793.493 kb on - strand, within Ga0059261_2683at 2793.493 kb on - strand, within Ga0059261_2683at 2793.493 kb on - strand, within Ga0059261_2683at 2793.493 kb on - strand, within Ga0059261_2683at 2793.493 kb on - strand, within Ga0059261_2683at 2793.493 kb on - strand, within Ga0059261_2683at 2793.999 kb on + strand, within Ga0059261_2684at 2793.999 kb on + strand, within Ga0059261_2684at 2794.000 kb on - strand, within Ga0059261_2684at 2794.116 kb on - strand, within Ga0059261_2684at 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.219 kb on + strandat 2794.220 kb on - strandat 2794.220 kb on - strandat 2794.220 kb on - strandat 2794.220 kb on - strandat 2794.220 kb on - strandat 2794.220 kb on - strandat 2794.220 kb on - strandat 2794.220 kb on - strandat 2794.220 kb on - strandat 2794.220 kb on - strandat 2794.220 kb on - strandat 2794.220 kb on - strandat 2794.220 kb on - strandat 2794.220 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,792,126 + +0.0
2,792,126 + +0.8
2,792,126 + +0.2
2,792,126 + -0.3
2,792,126 + -1.2
2,792,127 - +0.0
2,792,127 - -0.2
2,792,127 - +0.2
2,792,161 - Ga0059261_2680 0.10 -1.9
2,792,161 - Ga0059261_2680 0.10 -0.1
2,792,813 + -1.0
2,792,813 + -0.8
2,792,814 - -1.3
2,792,883 + +1.1
2,792,883 + -0.8
2,792,884 - -0.5
2,792,884 - +0.5
2,792,884 - -0.6
2,792,884 - +0.2
2,792,884 - -1.6
2,792,902 + +0.0
2,792,902 + -0.5
2,792,902 + +0.2
2,792,902 + +0.0
2,792,903 - +0.0
2,792,903 - -0.1
2,792,906 + +1.6
2,792,963 + Ga0059261_2682 0.15 +0.4
2,792,963 + Ga0059261_2682 0.15 +0.6
2,792,963 + Ga0059261_2682 0.15 +1.2
2,792,963 + Ga0059261_2682 0.15 +0.8
2,792,963 + Ga0059261_2682 0.15 +1.9
2,792,963 + Ga0059261_2682 0.15 -0.2
2,792,963 + Ga0059261_2682 0.15 +0.5
2,792,964 - Ga0059261_2682 0.16 +0.3
2,792,964 - Ga0059261_2682 0.16 -0.5
2,792,964 - Ga0059261_2682 0.16 +1.1
2,792,964 - Ga0059261_2682 0.16 -0.9
2,792,964 - Ga0059261_2682 0.16 -0.3
2,792,964 - Ga0059261_2682 0.16 +0.2
2,792,964 - Ga0059261_2682 0.16 +0.3
2,792,964 - Ga0059261_2682 0.16 -0.3
2,792,964 - Ga0059261_2682 0.16 -0.4
2,792,964 - Ga0059261_2682 0.16 +0.2
2,792,964 - Ga0059261_2682 0.16 +0.4
2,793,014 + Ga0059261_2682 0.29 +0.7
2,793,014 + Ga0059261_2682 0.29 +0.6
2,793,015 - Ga0059261_2682 0.29 -0.0
2,793,111 - Ga0059261_2682 0.54 +0.1
2,793,234 - Ga0059261_2682 0.87 +0.1
2,793,276 + +0.7
2,793,276 + +0.3
2,793,276 + +0.3
2,793,276 + +2.3
2,793,277 - -0.1
2,793,277 - +0.4
2,793,277 - +0.3
2,793,277 - -0.9
2,793,277 - +0.8
2,793,303 + +0.2
2,793,303 + +1.1
2,793,304 - -0.0
2,793,492 + Ga0059261_2683 0.67 -0.2
2,793,492 + Ga0059261_2683 0.67 -0.3
2,793,492 + Ga0059261_2683 0.67 +1.6
2,793,492 + Ga0059261_2683 0.67 -0.2
2,793,492 + Ga0059261_2683 0.67 +0.4
2,793,493 - Ga0059261_2683 0.67 -1.0
2,793,493 - Ga0059261_2683 0.67 +0.3
2,793,493 - Ga0059261_2683 0.67 +0.5
2,793,493 - Ga0059261_2683 0.67 -0.0
2,793,493 - Ga0059261_2683 0.67 +0.6
2,793,493 - Ga0059261_2683 0.67 -1.0
2,793,999 + Ga0059261_2684 0.65 +0.5
2,793,999 + Ga0059261_2684 0.65 -0.2
2,794,000 - Ga0059261_2684 0.65 +0.6
2,794,116 - Ga0059261_2684 0.83 -0.9
2,794,219 + -0.5
2,794,219 + -0.4
2,794,219 + +0.1
2,794,219 + -0.1
2,794,219 + -0.5
2,794,219 + -0.6
2,794,219 + -0.7
2,794,219 + -0.2
2,794,219 + -0.7
2,794,219 + -0.5
2,794,219 + -0.5
2,794,219 + -0.9
2,794,219 + +0.9
2,794,219 + -1.2
2,794,219 + -0.3
2,794,219 + +1.2
2,794,219 + -0.4
2,794,219 + +1.3
2,794,220 - -0.3
2,794,220 - -1.1
2,794,220 - +2.1
2,794,220 - -1.5
2,794,220 - -0.9
2,794,220 - -0.8
2,794,220 - -1.2
2,794,220 - +0.6
2,794,220 - -1.1
2,794,220 - -0.6
2,794,220 - -0.5
2,794,220 - -1.4
2,794,220 - +0.2
2,794,220 - -1.0

Or see this region's nucleotide sequence