Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2448

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2446 and Ga0059261_2447 are separated by 79 nucleotidesGa0059261_2447 and Ga0059261_2448 overlap by 8 nucleotidesGa0059261_2448 and Ga0059261_2449 are separated by 10 nucleotidesGa0059261_2449 and Ga0059261_2450 are separated by 136 nucleotides Ga0059261_2446: Ga0059261_2446 - glutamate racemase (EC 5.1.1.3), at 2,530,430 to 2,531,227 _2446 Ga0059261_2447: Ga0059261_2447 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 2,531,307 to 2,531,912 _2447 Ga0059261_2448: Ga0059261_2448 - DNA protecting protein DprA, at 2,531,905 to 2,532,990 _2448 Ga0059261_2449: Ga0059261_2449 - Hemerythrin HHE cation binding domain, at 2,533,001 to 2,533,429 _2449 Ga0059261_2450: Ga0059261_2450 - DNA topoisomerase I, bacterial, at 2,533,566 to 2,536,115 _2450 Position (kb) 2531 2532 2533Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2531.228 kb on - strandat 2531.228 kb on - strandat 2531.279 kb on - strandat 2531.279 kb on - strandat 2531.974 kb on + strandat 2531.975 kb on - strandat 2532.151 kb on + strand, within Ga0059261_2448at 2532.733 kb on - strand, within Ga0059261_2448at 2532.733 kb on - strand, within Ga0059261_2448at 2532.926 kb on + strandat 2532.926 kb on + strandat 2532.927 kb on - strandat 2532.927 kb on - strandat 2533.047 kb on + strand, within Ga0059261_2449at 2533.047 kb on + strand, within Ga0059261_2449at 2533.194 kb on + strand, within Ga0059261_2449at 2533.194 kb on + strand, within Ga0059261_2449at 2533.194 kb on + strand, within Ga0059261_2449at 2533.194 kb on + strand, within Ga0059261_2449at 2533.195 kb on - strand, within Ga0059261_2449at 2533.195 kb on - strand, within Ga0059261_2449at 2533.195 kb on - strand, within Ga0059261_2449at 2533.195 kb on - strand, within Ga0059261_2449at 2533.195 kb on - strand, within Ga0059261_2449at 2533.195 kb on - strand, within Ga0059261_2449at 2533.195 kb on - strand, within Ga0059261_2449at 2533.195 kb on - strand, within Ga0059261_2449at 2533.260 kb on + strand, within Ga0059261_2449at 2533.260 kb on + strand, within Ga0059261_2449at 2533.261 kb on - strand, within Ga0059261_2449at 2533.261 kb on - strand, within Ga0059261_2449at 2533.261 kb on - strand, within Ga0059261_2449at 2533.261 kb on - strand, within Ga0059261_2449at 2533.261 kb on - strand, within Ga0059261_2449at 2533.261 kb on - strand, within Ga0059261_2449at 2533.479 kb on + strandat 2533.480 kb on - strandat 2533.480 kb on - strandat 2533.538 kb on + strandat 2533.538 kb on + strandat 2533.538 kb on + strandat 2533.538 kb on + strandat 2533.540 kb on + strandat 2533.540 kb on + strandat 2533.540 kb on + strandat 2533.540 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,531,228 - +0.4
2,531,228 - +0.0
2,531,279 - -0.5
2,531,279 - -3.8
2,531,974 + +0.2
2,531,975 - +0.9
2,532,151 + Ga0059261_2448 0.23 +0.4
2,532,733 - Ga0059261_2448 0.76 +0.8
2,532,733 - Ga0059261_2448 0.76 +0.2
2,532,926 + -0.0
2,532,926 + +0.2
2,532,927 - +0.1
2,532,927 - -0.3
2,533,047 + Ga0059261_2449 0.11 +0.7
2,533,047 + Ga0059261_2449 0.11 +1.7
2,533,194 + Ga0059261_2449 0.45 -0.2
2,533,194 + Ga0059261_2449 0.45 +0.7
2,533,194 + Ga0059261_2449 0.45 +0.4
2,533,194 + Ga0059261_2449 0.45 -3.1
2,533,195 - Ga0059261_2449 0.45 -0.3
2,533,195 - Ga0059261_2449 0.45 -0.6
2,533,195 - Ga0059261_2449 0.45 +0.0
2,533,195 - Ga0059261_2449 0.45 +0.4
2,533,195 - Ga0059261_2449 0.45 +1.1
2,533,195 - Ga0059261_2449 0.45 -2.0
2,533,195 - Ga0059261_2449 0.45 +1.2
2,533,195 - Ga0059261_2449 0.45 -0.2
2,533,260 + Ga0059261_2449 0.60 +0.0
2,533,260 + Ga0059261_2449 0.60 -0.1
2,533,261 - Ga0059261_2449 0.61 -0.3
2,533,261 - Ga0059261_2449 0.61 +0.8
2,533,261 - Ga0059261_2449 0.61 -0.0
2,533,261 - Ga0059261_2449 0.61 -0.3
2,533,261 - Ga0059261_2449 0.61 +1.1
2,533,261 - Ga0059261_2449 0.61 -0.3
2,533,479 + +0.6
2,533,480 - -2.0
2,533,480 - -0.4
2,533,538 + -2.4
2,533,538 + +0.5
2,533,538 + +0.0
2,533,538 + -0.1
2,533,540 + +0.0
2,533,540 + -0.1
2,533,540 + -0.6
2,533,540 + +0.3

Or see this region's nucleotide sequence