Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2446 and Ga0059261_2447 are separated by 79 nucleotides Ga0059261_2447 and Ga0059261_2448 overlap by 8 nucleotides Ga0059261_2448 and Ga0059261_2449 are separated by 10 nucleotides Ga0059261_2449 and Ga0059261_2450 are separated by 136 nucleotides
Ga0059261_2446: Ga0059261_2446 - glutamate racemase (EC 5.1.1.3), at 2,530,430 to 2,531,227
_2446
Ga0059261_2447: Ga0059261_2447 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 2,531,307 to 2,531,912
_2447
Ga0059261_2448: Ga0059261_2448 - DNA protecting protein DprA, at 2,531,905 to 2,532,990
_2448
Ga0059261_2449: Ga0059261_2449 - Hemerythrin HHE cation binding domain, at 2,533,001 to 2,533,429
_2449
Ga0059261_2450: Ga0059261_2450 - DNA topoisomerase I, bacterial, at 2,533,566 to 2,536,115
_2450
Position (kb)
2531
2532
2533 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2531.228 kb on - strand at 2531.228 kb on - strand at 2531.279 kb on - strand at 2531.279 kb on - strand at 2531.974 kb on + strand at 2531.975 kb on - strand at 2532.151 kb on + strand, within Ga0059261_2448 at 2532.733 kb on - strand, within Ga0059261_2448 at 2532.733 kb on - strand, within Ga0059261_2448 at 2532.926 kb on + strand at 2532.926 kb on + strand at 2532.927 kb on - strand at 2532.927 kb on - strand at 2533.047 kb on + strand, within Ga0059261_2449 at 2533.047 kb on + strand, within Ga0059261_2449 at 2533.194 kb on + strand, within Ga0059261_2449 at 2533.194 kb on + strand, within Ga0059261_2449 at 2533.194 kb on + strand, within Ga0059261_2449 at 2533.194 kb on + strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.260 kb on + strand, within Ga0059261_2449 at 2533.260 kb on + strand, within Ga0059261_2449 at 2533.261 kb on - strand, within Ga0059261_2449 at 2533.261 kb on - strand, within Ga0059261_2449 at 2533.261 kb on - strand, within Ga0059261_2449 at 2533.261 kb on - strand, within Ga0059261_2449 at 2533.261 kb on - strand, within Ga0059261_2449 at 2533.261 kb on - strand, within Ga0059261_2449 at 2533.479 kb on + strand at 2533.480 kb on - strand at 2533.480 kb on - strand at 2533.538 kb on + strand at 2533.538 kb on + strand at 2533.538 kb on + strand at 2533.538 kb on + strand at 2533.540 kb on + strand at 2533.540 kb on + strand at 2533.540 kb on + strand at 2533.540 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 2,531,228 - +0.4 2,531,228 - +0.0 2,531,279 - -0.5 2,531,279 - -3.8 2,531,974 + +0.2 2,531,975 - +0.9 2,532,151 + Ga0059261_2448 0.23 +0.4 2,532,733 - Ga0059261_2448 0.76 +0.8 2,532,733 - Ga0059261_2448 0.76 +0.2 2,532,926 + -0.0 2,532,926 + +0.2 2,532,927 - +0.1 2,532,927 - -0.3 2,533,047 + Ga0059261_2449 0.11 +0.7 2,533,047 + Ga0059261_2449 0.11 +1.7 2,533,194 + Ga0059261_2449 0.45 -0.2 2,533,194 + Ga0059261_2449 0.45 +0.7 2,533,194 + Ga0059261_2449 0.45 +0.4 2,533,194 + Ga0059261_2449 0.45 -3.1 2,533,195 - Ga0059261_2449 0.45 -0.3 2,533,195 - Ga0059261_2449 0.45 -0.6 2,533,195 - Ga0059261_2449 0.45 +0.0 2,533,195 - Ga0059261_2449 0.45 +0.4 2,533,195 - Ga0059261_2449 0.45 +1.1 2,533,195 - Ga0059261_2449 0.45 -2.0 2,533,195 - Ga0059261_2449 0.45 +1.2 2,533,195 - Ga0059261_2449 0.45 -0.2 2,533,260 + Ga0059261_2449 0.60 +0.0 2,533,260 + Ga0059261_2449 0.60 -0.1 2,533,261 - Ga0059261_2449 0.61 -0.3 2,533,261 - Ga0059261_2449 0.61 +0.8 2,533,261 - Ga0059261_2449 0.61 -0.0 2,533,261 - Ga0059261_2449 0.61 -0.3 2,533,261 - Ga0059261_2449 0.61 +1.1 2,533,261 - Ga0059261_2449 0.61 -0.3 2,533,479 + +0.6 2,533,480 - -2.0 2,533,480 - -0.4 2,533,538 + -2.4 2,533,538 + +0.5 2,533,538 + +0.0 2,533,538 + -0.1 2,533,540 + +0.0 2,533,540 + -0.1 2,533,540 + -0.6 2,533,540 + +0.3
Or see this region's nucleotide sequence