Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2286

Experiment: D-Fructose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_2284 and Ga0059261_2285 are separated by 112 nucleotidesGa0059261_2285 and Ga0059261_2286 overlap by 4 nucleotidesGa0059261_2286 and Ga0059261_2287 overlap by 4 nucleotidesGa0059261_2287 and Ga0059261_2288 are separated by 38 nucleotidesGa0059261_2288 and Ga0059261_2289 are separated by 17 nucleotides Ga0059261_2284: Ga0059261_2284 - lysyl-tRNA synthetase, class I (EC 6.1.1.6), at 2,388,060 to 2,389,637 _2284 Ga0059261_2285: Ga0059261_2285 - Fe2+ transport system protein A, at 2,389,750 to 2,389,998 _2285 Ga0059261_2286: Ga0059261_2286 - Fe2+ transport system protein B, at 2,389,995 to 2,391,839 _2286 Ga0059261_2287: Ga0059261_2287 - Domain of unknown function (DUF4169), at 2,391,836 to 2,392,009 _2287 Ga0059261_2288: Ga0059261_2288 - single stranded DNA-binding protein (ssb), at 2,392,048 to 2,392,608 _2288 Ga0059261_2289: Ga0059261_2289 - Glycine/D-amino acid oxidases (deaminating), at 2,392,626 to 2,394,164 _2289 Position (kb) 2389 2390 2391 2392Strain fitness (log2 ratio) -2 -1 0 1 2at 2389.720 kb on + strandat 2389.749 kb on + strandat 2389.749 kb on + strandat 2389.784 kb on + strand, within Ga0059261_2285at 2389.784 kb on + strand, within Ga0059261_2285at 2389.784 kb on + strand, within Ga0059261_2285at 2390.094 kb on + strandat 2390.095 kb on - strandat 2390.095 kb on - strandat 2390.181 kb on + strand, within Ga0059261_2286at 2390.182 kb on - strand, within Ga0059261_2286at 2390.230 kb on + strand, within Ga0059261_2286at 2390.231 kb on - strand, within Ga0059261_2286at 2390.231 kb on - strand, within Ga0059261_2286at 2390.910 kb on + strand, within Ga0059261_2286at 2390.910 kb on + strand, within Ga0059261_2286at 2390.910 kb on + strand, within Ga0059261_2286at 2390.911 kb on - strand, within Ga0059261_2286at 2390.911 kb on - strand, within Ga0059261_2286at 2390.911 kb on - strand, within Ga0059261_2286at 2390.911 kb on - strand, within Ga0059261_2286at 2390.911 kb on - strand, within Ga0059261_2286at 2390.911 kb on - strand, within Ga0059261_2286at 2390.911 kb on - strandat 2390.911 kb on - strand, within Ga0059261_2286at 2390.912 kb on + strand, within Ga0059261_2286at 2390.913 kb on - strandat 2390.913 kb on - strandat 2391.111 kb on + strand, within Ga0059261_2286at 2391.111 kb on + strand, within Ga0059261_2286at 2391.112 kb on - strandat 2391.112 kb on - strand, within Ga0059261_2286at 2391.195 kb on + strand, within Ga0059261_2286at 2391.195 kb on + strand, within Ga0059261_2286at 2391.195 kb on + strand, within Ga0059261_2286at 2391.195 kb on + strand, within Ga0059261_2286at 2391.195 kb on + strand, within Ga0059261_2286at 2391.196 kb on - strand, within Ga0059261_2286at 2391.196 kb on - strand, within Ga0059261_2286at 2391.196 kb on - strand, within Ga0059261_2286at 2391.196 kb on - strand, within Ga0059261_2286at 2391.414 kb on + strandat 2391.414 kb on + strand, within Ga0059261_2286at 2391.414 kb on + strand, within Ga0059261_2286at 2391.415 kb on - strand, within Ga0059261_2286at 2391.415 kb on - strand, within Ga0059261_2286at 2391.415 kb on - strand, within Ga0059261_2286at 2391.415 kb on - strand, within Ga0059261_2286at 2391.415 kb on - strand, within Ga0059261_2286at 2391.451 kb on - strandat 2391.585 kb on + strand, within Ga0059261_2286at 2391.585 kb on + strand, within Ga0059261_2286at 2391.585 kb on + strand, within Ga0059261_2286at 2391.585 kb on + strand, within Ga0059261_2286at 2391.688 kb on + strandat 2391.688 kb on + strandat 2391.771 kb on + strandat 2391.771 kb on + strandat 2391.772 kb on - strandat 2391.772 kb on - strandat 2391.789 kb on + strandat 2391.789 kb on + strandat 2391.789 kb on + strandat 2391.789 kb on + strandat 2391.789 kb on + strandat 2391.789 kb on + strandat 2391.789 kb on + strandat 2391.790 kb on - strandat 2391.790 kb on - strandat 2391.810 kb on + strandat 2391.810 kb on + strandat 2391.810 kb on + strandat 2391.811 kb on - strandat 2391.811 kb on - strandat 2391.811 kb on - strandat 2391.837 kb on + strandat 2392.024 kb on + strandat 2392.024 kb on + strandat 2392.024 kb on + strandat 2392.024 kb on + strandat 2392.024 kb on + strandat 2392.024 kb on + strandat 2392.664 kb on + strandat 2392.664 kb on + strandat 2392.665 kb on - strandat 2392.774 kb on + strandat 2392.774 kb on + strandat 2392.774 kb on + strandat 2392.774 kb on + strandat 2392.774 kb on + strandat 2392.775 kb on - strandat 2392.775 kb on - strandat 2392.775 kb on - strandat 2392.775 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
remove
2,389,720 + +1.0
2,389,749 + -0.4
2,389,749 + +0.8
2,389,784 + Ga0059261_2285 0.14 +1.1
2,389,784 + Ga0059261_2285 0.14 +0.5
2,389,784 + Ga0059261_2285 0.14 +0.7
2,390,094 + +0.0
2,390,095 - +0.7
2,390,095 - -0.1
2,390,181 + Ga0059261_2286 0.10 +0.4
2,390,182 - Ga0059261_2286 0.10 +0.2
2,390,230 + Ga0059261_2286 0.13 +0.7
2,390,231 - Ga0059261_2286 0.13 +1.1
2,390,231 - Ga0059261_2286 0.13 +1.3
2,390,910 + Ga0059261_2286 0.50 -0.1
2,390,910 + Ga0059261_2286 0.50 +0.5
2,390,910 + Ga0059261_2286 0.50 +0.1
2,390,911 - Ga0059261_2286 0.50 +0.1
2,390,911 - Ga0059261_2286 0.50 -0.5
2,390,911 - Ga0059261_2286 0.50 +1.7
2,390,911 - Ga0059261_2286 0.50 +2.0
2,390,911 - Ga0059261_2286 0.50 +1.7
2,390,911 - Ga0059261_2286 0.50 +2.0
2,390,911 - +0.7
2,390,911 - Ga0059261_2286 0.50 +1.0
2,390,912 + Ga0059261_2286 0.50 +1.4
2,390,913 - -0.6
2,390,913 - +0.1
2,391,111 + Ga0059261_2286 0.60 +0.2
2,391,111 + Ga0059261_2286 0.60 -0.5
2,391,112 - +0.7
2,391,112 - Ga0059261_2286 0.61 +1.1
2,391,195 + Ga0059261_2286 0.65 +0.1
2,391,195 + Ga0059261_2286 0.65 +1.5
2,391,195 + Ga0059261_2286 0.65 -0.5
2,391,195 + Ga0059261_2286 0.65 +0.0
2,391,195 + Ga0059261_2286 0.65 +0.1
2,391,196 - Ga0059261_2286 0.65 +0.4
2,391,196 - Ga0059261_2286 0.65 +1.0
2,391,196 - Ga0059261_2286 0.65 +1.7
2,391,196 - Ga0059261_2286 0.65 +0.2
2,391,414 + +1.0
2,391,414 + Ga0059261_2286 0.77 +0.3
2,391,414 + Ga0059261_2286 0.77 -0.2
2,391,415 - Ga0059261_2286 0.77 +0.8
2,391,415 - Ga0059261_2286 0.77 +1.7
2,391,415 - Ga0059261_2286 0.77 +0.8
2,391,415 - Ga0059261_2286 0.77 -1.8
2,391,415 - Ga0059261_2286 0.77 -0.3
2,391,451 - -0.6
2,391,585 + Ga0059261_2286 0.86 +1.1
2,391,585 + Ga0059261_2286 0.86 -0.5
2,391,585 + Ga0059261_2286 0.86 +0.6
2,391,585 + Ga0059261_2286 0.86 -0.6
2,391,688 + +1.1
2,391,688 + -0.2
2,391,771 + +0.7
2,391,771 + +2.1
2,391,772 - +0.8
2,391,772 - -0.0
2,391,789 + -1.1
2,391,789 + -0.4
2,391,789 + +0.5
2,391,789 + +1.3
2,391,789 + -0.1
2,391,789 + +1.7
2,391,789 + -0.5
2,391,790 - +0.4
2,391,790 - -1.5
2,391,810 + +1.3
2,391,810 + -0.2
2,391,810 + -0.4
2,391,811 - +1.1
2,391,811 - -0.3
2,391,811 - +2.0
2,391,837 + -0.2
2,392,024 + -0.1
2,392,024 + +0.0
2,392,024 + -0.4
2,392,024 + -0.1
2,392,024 + +1.1
2,392,024 + -0.9
2,392,664 + +0.7
2,392,664 + -0.0
2,392,665 - +0.5
2,392,774 + -0.1
2,392,774 + +2.1
2,392,774 + +0.2
2,392,774 + -0.2
2,392,774 + +0.0
2,392,775 - -0.8
2,392,775 - +0.6
2,392,775 - -0.3
2,392,775 - +0.5

Or see this region's nucleotide sequence