Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2284 and Ga0059261_2285 are separated by 112 nucleotides Ga0059261_2285 and Ga0059261_2286 overlap by 4 nucleotides Ga0059261_2286 and Ga0059261_2287 overlap by 4 nucleotides Ga0059261_2287 and Ga0059261_2288 are separated by 38 nucleotides Ga0059261_2288 and Ga0059261_2289 are separated by 17 nucleotides
Ga0059261_2284: Ga0059261_2284 - lysyl-tRNA synthetase, class I (EC 6.1.1.6), at 2,388,060 to 2,389,637
_2284
Ga0059261_2285: Ga0059261_2285 - Fe2+ transport system protein A, at 2,389,750 to 2,389,998
_2285
Ga0059261_2286: Ga0059261_2286 - Fe2+ transport system protein B, at 2,389,995 to 2,391,839
_2286
Ga0059261_2287: Ga0059261_2287 - Domain of unknown function (DUF4169), at 2,391,836 to 2,392,009
_2287
Ga0059261_2288: Ga0059261_2288 - single stranded DNA-binding protein (ssb), at 2,392,048 to 2,392,608
_2288
Ga0059261_2289: Ga0059261_2289 - Glycine/D-amino acid oxidases (deaminating), at 2,392,626 to 2,394,164
_2289
Position (kb)
2389
2390
2391
2392 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2389.720 kb on + strand at 2389.749 kb on + strand at 2389.749 kb on + strand at 2389.784 kb on + strand, within Ga0059261_2285 at 2389.784 kb on + strand, within Ga0059261_2285 at 2389.784 kb on + strand, within Ga0059261_2285 at 2390.094 kb on + strand at 2390.095 kb on - strand at 2390.095 kb on - strand at 2390.181 kb on + strand, within Ga0059261_2286 at 2390.182 kb on - strand, within Ga0059261_2286 at 2390.230 kb on + strand, within Ga0059261_2286 at 2390.231 kb on - strand, within Ga0059261_2286 at 2390.231 kb on - strand, within Ga0059261_2286 at 2390.910 kb on + strand, within Ga0059261_2286 at 2390.910 kb on + strand, within Ga0059261_2286 at 2390.910 kb on + strand, within Ga0059261_2286 at 2390.911 kb on - strand, within Ga0059261_2286 at 2390.911 kb on - strand, within Ga0059261_2286 at 2390.911 kb on - strand, within Ga0059261_2286 at 2390.911 kb on - strand, within Ga0059261_2286 at 2390.911 kb on - strand, within Ga0059261_2286 at 2390.911 kb on - strand, within Ga0059261_2286 at 2390.911 kb on - strand at 2390.911 kb on - strand, within Ga0059261_2286 at 2390.912 kb on + strand, within Ga0059261_2286 at 2390.913 kb on - strand at 2390.913 kb on - strand at 2391.111 kb on + strand, within Ga0059261_2286 at 2391.111 kb on + strand, within Ga0059261_2286 at 2391.112 kb on - strand at 2391.112 kb on - strand, within Ga0059261_2286 at 2391.195 kb on + strand, within Ga0059261_2286 at 2391.195 kb on + strand, within Ga0059261_2286 at 2391.195 kb on + strand, within Ga0059261_2286 at 2391.195 kb on + strand, within Ga0059261_2286 at 2391.195 kb on + strand, within Ga0059261_2286 at 2391.196 kb on - strand, within Ga0059261_2286 at 2391.196 kb on - strand, within Ga0059261_2286 at 2391.196 kb on - strand, within Ga0059261_2286 at 2391.196 kb on - strand, within Ga0059261_2286 at 2391.414 kb on + strand at 2391.414 kb on + strand, within Ga0059261_2286 at 2391.414 kb on + strand, within Ga0059261_2286 at 2391.415 kb on - strand, within Ga0059261_2286 at 2391.415 kb on - strand, within Ga0059261_2286 at 2391.415 kb on - strand, within Ga0059261_2286 at 2391.415 kb on - strand, within Ga0059261_2286 at 2391.415 kb on - strand, within Ga0059261_2286 at 2391.451 kb on - strand at 2391.585 kb on + strand, within Ga0059261_2286 at 2391.585 kb on + strand, within Ga0059261_2286 at 2391.585 kb on + strand, within Ga0059261_2286 at 2391.585 kb on + strand, within Ga0059261_2286 at 2391.688 kb on + strand at 2391.688 kb on + strand at 2391.771 kb on + strand at 2391.771 kb on + strand at 2391.772 kb on - strand at 2391.772 kb on - strand at 2391.789 kb on + strand at 2391.789 kb on + strand at 2391.789 kb on + strand at 2391.789 kb on + strand at 2391.789 kb on + strand at 2391.789 kb on + strand at 2391.789 kb on + strand at 2391.790 kb on - strand at 2391.790 kb on - strand at 2391.810 kb on + strand at 2391.810 kb on + strand at 2391.810 kb on + strand at 2391.811 kb on - strand at 2391.811 kb on - strand at 2391.811 kb on - strand at 2391.837 kb on + strand at 2392.024 kb on + strand at 2392.024 kb on + strand at 2392.024 kb on + strand at 2392.024 kb on + strand at 2392.024 kb on + strand at 2392.024 kb on + strand at 2392.664 kb on + strand at 2392.664 kb on + strand at 2392.665 kb on - strand at 2392.774 kb on + strand at 2392.774 kb on + strand at 2392.774 kb on + strand at 2392.774 kb on + strand at 2392.774 kb on + strand at 2392.775 kb on - strand at 2392.775 kb on - strand at 2392.775 kb on - strand at 2392.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 2,389,720 + +1.0 2,389,749 + -0.4 2,389,749 + +0.8 2,389,784 + Ga0059261_2285 0.14 +1.1 2,389,784 + Ga0059261_2285 0.14 +0.5 2,389,784 + Ga0059261_2285 0.14 +0.7 2,390,094 + +0.0 2,390,095 - +0.7 2,390,095 - -0.1 2,390,181 + Ga0059261_2286 0.10 +0.4 2,390,182 - Ga0059261_2286 0.10 +0.2 2,390,230 + Ga0059261_2286 0.13 +0.7 2,390,231 - Ga0059261_2286 0.13 +1.1 2,390,231 - Ga0059261_2286 0.13 +1.3 2,390,910 + Ga0059261_2286 0.50 -0.1 2,390,910 + Ga0059261_2286 0.50 +0.5 2,390,910 + Ga0059261_2286 0.50 +0.1 2,390,911 - Ga0059261_2286 0.50 +0.1 2,390,911 - Ga0059261_2286 0.50 -0.5 2,390,911 - Ga0059261_2286 0.50 +1.7 2,390,911 - Ga0059261_2286 0.50 +2.0 2,390,911 - Ga0059261_2286 0.50 +1.7 2,390,911 - Ga0059261_2286 0.50 +2.0 2,390,911 - +0.7 2,390,911 - Ga0059261_2286 0.50 +1.0 2,390,912 + Ga0059261_2286 0.50 +1.4 2,390,913 - -0.6 2,390,913 - +0.1 2,391,111 + Ga0059261_2286 0.60 +0.2 2,391,111 + Ga0059261_2286 0.60 -0.5 2,391,112 - +0.7 2,391,112 - Ga0059261_2286 0.61 +1.1 2,391,195 + Ga0059261_2286 0.65 +0.1 2,391,195 + Ga0059261_2286 0.65 +1.5 2,391,195 + Ga0059261_2286 0.65 -0.5 2,391,195 + Ga0059261_2286 0.65 +0.0 2,391,195 + Ga0059261_2286 0.65 +0.1 2,391,196 - Ga0059261_2286 0.65 +0.4 2,391,196 - Ga0059261_2286 0.65 +1.0 2,391,196 - Ga0059261_2286 0.65 +1.7 2,391,196 - Ga0059261_2286 0.65 +0.2 2,391,414 + +1.0 2,391,414 + Ga0059261_2286 0.77 +0.3 2,391,414 + Ga0059261_2286 0.77 -0.2 2,391,415 - Ga0059261_2286 0.77 +0.8 2,391,415 - Ga0059261_2286 0.77 +1.7 2,391,415 - Ga0059261_2286 0.77 +0.8 2,391,415 - Ga0059261_2286 0.77 -1.8 2,391,415 - Ga0059261_2286 0.77 -0.3 2,391,451 - -0.6 2,391,585 + Ga0059261_2286 0.86 +1.1 2,391,585 + Ga0059261_2286 0.86 -0.5 2,391,585 + Ga0059261_2286 0.86 +0.6 2,391,585 + Ga0059261_2286 0.86 -0.6 2,391,688 + +1.1 2,391,688 + -0.2 2,391,771 + +0.7 2,391,771 + +2.1 2,391,772 - +0.8 2,391,772 - -0.0 2,391,789 + -1.1 2,391,789 + -0.4 2,391,789 + +0.5 2,391,789 + +1.3 2,391,789 + -0.1 2,391,789 + +1.7 2,391,789 + -0.5 2,391,790 - +0.4 2,391,790 - -1.5 2,391,810 + +1.3 2,391,810 + -0.2 2,391,810 + -0.4 2,391,811 - +1.1 2,391,811 - -0.3 2,391,811 - +2.0 2,391,837 + -0.2 2,392,024 + -0.1 2,392,024 + +0.0 2,392,024 + -0.4 2,392,024 + -0.1 2,392,024 + +1.1 2,392,024 + -0.9 2,392,664 + +0.7 2,392,664 + -0.0 2,392,665 - +0.5 2,392,774 + -0.1 2,392,774 + +2.1 2,392,774 + +0.2 2,392,774 + -0.2 2,392,774 + +0.0 2,392,775 - -0.8 2,392,775 - +0.6 2,392,775 - -0.3 2,392,775 - +0.5
Or see this region's nucleotide sequence