Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2285

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2284 and Ga0059261_2285 are separated by 112 nucleotidesGa0059261_2285 and Ga0059261_2286 overlap by 4 nucleotides Ga0059261_2284: Ga0059261_2284 - lysyl-tRNA synthetase, class I (EC 6.1.1.6), at 2,388,060 to 2,389,637 _2284 Ga0059261_2285: Ga0059261_2285 - Fe2+ transport system protein A, at 2,389,750 to 2,389,998 _2285 Ga0059261_2286: Ga0059261_2286 - Fe2+ transport system protein B, at 2,389,995 to 2,391,839 _2286 Position (kb) 2389 2390Strain fitness (log2 ratio) -1 0 1 2at 2389.720 kb on + strandat 2389.749 kb on + strandat 2389.749 kb on + strandat 2389.784 kb on + strand, within Ga0059261_2285at 2389.784 kb on + strand, within Ga0059261_2285at 2389.784 kb on + strand, within Ga0059261_2285at 2390.094 kb on + strandat 2390.095 kb on - strandat 2390.095 kb on - strandat 2390.181 kb on + strand, within Ga0059261_2286at 2390.182 kb on - strand, within Ga0059261_2286at 2390.230 kb on + strand, within Ga0059261_2286at 2390.231 kb on - strand, within Ga0059261_2286at 2390.231 kb on - strand, within Ga0059261_2286at 2390.910 kb on + strand, within Ga0059261_2286at 2390.910 kb on + strand, within Ga0059261_2286at 2390.910 kb on + strand, within Ga0059261_2286at 2390.911 kb on - strand, within Ga0059261_2286at 2390.911 kb on - strand, within Ga0059261_2286at 2390.911 kb on - strand, within Ga0059261_2286at 2390.911 kb on - strand, within Ga0059261_2286at 2390.911 kb on - strand, within Ga0059261_2286at 2390.911 kb on - strand, within Ga0059261_2286at 2390.911 kb on - strandat 2390.911 kb on - strand, within Ga0059261_2286at 2390.912 kb on + strand, within Ga0059261_2286at 2390.913 kb on - strandat 2390.913 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,389,720 + +1.0
2,389,749 + -0.4
2,389,749 + +0.8
2,389,784 + Ga0059261_2285 0.14 +1.1
2,389,784 + Ga0059261_2285 0.14 +0.5
2,389,784 + Ga0059261_2285 0.14 +0.7
2,390,094 + +0.0
2,390,095 - +0.7
2,390,095 - -0.1
2,390,181 + Ga0059261_2286 0.10 +0.4
2,390,182 - Ga0059261_2286 0.10 +0.2
2,390,230 + Ga0059261_2286 0.13 +0.7
2,390,231 - Ga0059261_2286 0.13 +1.1
2,390,231 - Ga0059261_2286 0.13 +1.3
2,390,910 + Ga0059261_2286 0.50 -0.1
2,390,910 + Ga0059261_2286 0.50 +0.5
2,390,910 + Ga0059261_2286 0.50 +0.1
2,390,911 - Ga0059261_2286 0.50 +0.1
2,390,911 - Ga0059261_2286 0.50 -0.5
2,390,911 - Ga0059261_2286 0.50 +1.7
2,390,911 - Ga0059261_2286 0.50 +2.0
2,390,911 - Ga0059261_2286 0.50 +1.7
2,390,911 - Ga0059261_2286 0.50 +2.0
2,390,911 - +0.7
2,390,911 - Ga0059261_2286 0.50 +1.0
2,390,912 + Ga0059261_2286 0.50 +1.4
2,390,913 - -0.6
2,390,913 - +0.1

Or see this region's nucleotide sequence