Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1914

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1912 and Ga0059261_1913 overlap by 8 nucleotidesGa0059261_1913 and Ga0059261_1914 overlap by 4 nucleotidesGa0059261_1914 and Ga0059261_1915 are separated by 109 nucleotidesGa0059261_1915 and Ga0059261_1916 are separated by 121 nucleotides Ga0059261_1912: Ga0059261_1912 - Nitroreductase, at 2,022,972 to 2,023,565 _1912 Ga0059261_1913: Ga0059261_1913 - tRNA threonylcarbamoyl adenosine modification protein YeaZ, at 2,023,558 to 2,024,202 _1913 Ga0059261_1914: Ga0059261_1914 - Acetyltransferases, at 2,024,199 to 2,024,675 _1914 Ga0059261_1915: Ga0059261_1915 - transcriptional regulator, MucR family, at 2,024,785 to 2,025,201 _1915 Ga0059261_1916: Ga0059261_1916 - Fe2+/Zn2+ uptake regulation proteins, at 2,025,323 to 2,025,745 _1916 Position (kb) 2024 2025Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2023.362 kb on + strand, within Ga0059261_1912at 2023.362 kb on + strand, within Ga0059261_1912at 2024.149 kb on + strandat 2024.149 kb on + strandat 2024.149 kb on + strandat 2024.149 kb on + strandat 2024.149 kb on + strandat 2024.149 kb on + strandat 2024.150 kb on - strandat 2024.150 kb on - strandat 2024.150 kb on - strandat 2024.150 kb on - strandat 2024.150 kb on - strandat 2024.571 kb on + strand, within Ga0059261_1914at 2024.613 kb on + strand, within Ga0059261_1914at 2024.614 kb on - strand, within Ga0059261_1914at 2024.614 kb on - strand, within Ga0059261_1914at 2024.729 kb on - strandat 2024.747 kb on + strandat 2024.748 kb on - strandat 2024.748 kb on - strandat 2024.770 kb on + strandat 2024.771 kb on - strandat 2025.001 kb on + strand, within Ga0059261_1915at 2025.001 kb on + strand, within Ga0059261_1915at 2025.001 kb on + strand, within Ga0059261_1915at 2025.002 kb on - strand, within Ga0059261_1915at 2025.002 kb on - strand, within Ga0059261_1915at 2025.002 kb on - strand, within Ga0059261_1915at 2025.003 kb on + strand, within Ga0059261_1915at 2025.003 kb on + strand, within Ga0059261_1915at 2025.003 kb on + strand, within Ga0059261_1915at 2025.004 kb on - strand, within Ga0059261_1915at 2025.004 kb on - strand, within Ga0059261_1915at 2025.025 kb on - strand, within Ga0059261_1915at 2025.025 kb on - strand, within Ga0059261_1915at 2025.065 kb on - strand, within Ga0059261_1915at 2025.085 kb on + strand, within Ga0059261_1915at 2025.086 kb on - strand, within Ga0059261_1915at 2025.136 kb on + strand, within Ga0059261_1915at 2025.136 kb on + strand, within Ga0059261_1915at 2025.136 kb on + strand, within Ga0059261_1915at 2025.137 kb on - strand, within Ga0059261_1915at 2025.137 kb on - strand, within Ga0059261_1915at 2025.137 kb on - strand, within Ga0059261_1915at 2025.212 kb on + strandat 2025.212 kb on + strandat 2025.213 kb on - strandat 2025.311 kb on + strandat 2025.311 kb on + strandat 2025.311 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,023,362 + Ga0059261_1912 0.66 +1.0
2,023,362 + Ga0059261_1912 0.66 +0.8
2,024,149 + +1.6
2,024,149 + -0.0
2,024,149 + +0.7
2,024,149 + +0.1
2,024,149 + +0.6
2,024,149 + -0.1
2,024,150 - +0.5
2,024,150 - +0.2
2,024,150 - +0.4
2,024,150 - +0.8
2,024,150 - +0.4
2,024,571 + Ga0059261_1914 0.78 -0.2
2,024,613 + Ga0059261_1914 0.87 +0.6
2,024,614 - Ga0059261_1914 0.87 +0.9
2,024,614 - Ga0059261_1914 0.87 +0.4
2,024,729 - -0.2
2,024,747 + -0.7
2,024,748 - -0.1
2,024,748 - +0.8
2,024,770 + -3.8
2,024,771 - -0.2
2,025,001 + Ga0059261_1915 0.52 +0.1
2,025,001 + Ga0059261_1915 0.52 -0.6
2,025,001 + Ga0059261_1915 0.52 -0.8
2,025,002 - Ga0059261_1915 0.52 -0.1
2,025,002 - Ga0059261_1915 0.52 -0.3
2,025,002 - Ga0059261_1915 0.52 -1.9
2,025,003 + Ga0059261_1915 0.52 +0.4
2,025,003 + Ga0059261_1915 0.52 -0.9
2,025,003 + Ga0059261_1915 0.52 +0.8
2,025,004 - Ga0059261_1915 0.53 -0.2
2,025,004 - Ga0059261_1915 0.53 +1.1
2,025,025 - Ga0059261_1915 0.58 -1.4
2,025,025 - Ga0059261_1915 0.58 +1.0
2,025,065 - Ga0059261_1915 0.67 -0.7
2,025,085 + Ga0059261_1915 0.72 -0.2
2,025,086 - Ga0059261_1915 0.72 -0.1
2,025,136 + Ga0059261_1915 0.84 -0.7
2,025,136 + Ga0059261_1915 0.84 -0.5
2,025,136 + Ga0059261_1915 0.84 -1.1
2,025,137 - Ga0059261_1915 0.84 +0.1
2,025,137 - Ga0059261_1915 0.84 +0.3
2,025,137 - Ga0059261_1915 0.84 -0.6
2,025,212 + -0.0
2,025,212 + -0.4
2,025,213 - +0.2
2,025,311 + -1.0
2,025,311 + -1.7
2,025,311 + -1.5

Or see this region's nucleotide sequence