Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1912

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1910 and Ga0059261_1911 are separated by 143 nucleotidesGa0059261_1911 and Ga0059261_1912 overlap by 1 nucleotidesGa0059261_1912 and Ga0059261_1913 overlap by 8 nucleotidesGa0059261_1913 and Ga0059261_1914 overlap by 4 nucleotides Ga0059261_1910: Ga0059261_1910 - translation initiation factor IF-1, at 2,022,029 to 2,022,247 _1910 Ga0059261_1911: Ga0059261_1911 - Thioredoxin-like proteins and domains, at 2,022,391 to 2,022,972 _1911 Ga0059261_1912: Ga0059261_1912 - Nitroreductase, at 2,022,972 to 2,023,565 _1912 Ga0059261_1913: Ga0059261_1913 - tRNA threonylcarbamoyl adenosine modification protein YeaZ, at 2,023,558 to 2,024,202 _1913 Ga0059261_1914: Ga0059261_1914 - Acetyltransferases, at 2,024,199 to 2,024,675 _1914 Position (kb) 2022 2023 2024Strain fitness (log2 ratio) -1 0 1 2at 2021.980 kb on + strandat 2021.981 kb on - strandat 2021.981 kb on - strandat 2022.853 kb on + strand, within Ga0059261_1911at 2022.854 kb on - strand, within Ga0059261_1911at 2022.854 kb on - strand, within Ga0059261_1911at 2022.854 kb on - strand, within Ga0059261_1911at 2022.854 kb on - strand, within Ga0059261_1911at 2022.934 kb on + strandat 2022.934 kb on + strandat 2022.934 kb on + strandat 2023.029 kb on + strandat 2023.029 kb on + strandat 2023.029 kb on + strandat 2023.029 kb on + strandat 2023.029 kb on + strandat 2023.029 kb on + strandat 2023.029 kb on + strandat 2023.031 kb on + strandat 2023.038 kb on + strand, within Ga0059261_1912at 2023.038 kb on + strand, within Ga0059261_1912at 2023.080 kb on + strandat 2023.080 kb on + strand, within Ga0059261_1912at 2023.080 kb on + strand, within Ga0059261_1912at 2023.362 kb on + strand, within Ga0059261_1912at 2023.362 kb on + strand, within Ga0059261_1912at 2024.149 kb on + strandat 2024.149 kb on + strandat 2024.149 kb on + strandat 2024.149 kb on + strandat 2024.149 kb on + strandat 2024.149 kb on + strandat 2024.150 kb on - strandat 2024.150 kb on - strandat 2024.150 kb on - strandat 2024.150 kb on - strandat 2024.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,021,980 + +0.0
2,021,981 - -0.0
2,021,981 - -0.0
2,022,853 + Ga0059261_1911 0.79 -1.2
2,022,854 - Ga0059261_1911 0.80 -0.4
2,022,854 - Ga0059261_1911 0.80 -1.3
2,022,854 - Ga0059261_1911 0.80 -0.5
2,022,854 - Ga0059261_1911 0.80 +0.0
2,022,934 + +0.6
2,022,934 + -0.0
2,022,934 + -1.0
2,023,029 + +0.5
2,023,029 + +0.3
2,023,029 + +0.5
2,023,029 + +0.2
2,023,029 + +0.8
2,023,029 + -0.5
2,023,029 + +1.3
2,023,031 + +2.0
2,023,038 + Ga0059261_1912 0.11 +0.7
2,023,038 + Ga0059261_1912 0.11 -0.4
2,023,080 + -1.2
2,023,080 + Ga0059261_1912 0.18 +0.1
2,023,080 + Ga0059261_1912 0.18 +0.7
2,023,362 + Ga0059261_1912 0.66 +1.0
2,023,362 + Ga0059261_1912 0.66 +0.8
2,024,149 + +1.6
2,024,149 + -0.0
2,024,149 + +0.7
2,024,149 + +0.1
2,024,149 + +0.6
2,024,149 + -0.1
2,024,150 - +0.5
2,024,150 - +0.2
2,024,150 - +0.4
2,024,150 - +0.8
2,024,150 - +0.4

Or see this region's nucleotide sequence