Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1815

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1812 and Ga0059261_1813 are separated by 32 nucleotidesGa0059261_1813 and Ga0059261_1814 are separated by 94 nucleotidesGa0059261_1814 and Ga0059261_1815 are separated by 12 nucleotidesGa0059261_1815 and Ga0059261_1816 are separated by 178 nucleotidesGa0059261_1816 and Ga0059261_1817 are separated by 202 nucleotides Ga0059261_1812: Ga0059261_1812 - tRNA, at 1,926,129 to 1,926,202 _1812 Ga0059261_1813: Ga0059261_1813 - tRNA, at 1,926,235 to 1,926,320 _1813 Ga0059261_1814: Ga0059261_1814 - rRNA methylase, putative, group 3, at 1,926,415 to 1,927,173 _1814 Ga0059261_1815: Ga0059261_1815 - hypothetical protein, at 1,927,186 to 1,927,953 _1815 Ga0059261_1816: Ga0059261_1816 - hypothetical protein, at 1,928,132 to 1,928,404 _1816 Ga0059261_1817: Ga0059261_1817 - Ferredoxin, at 1,928,607 to 1,928,924 _1817 Position (kb) 1927 1928Strain fitness (log2 ratio) -2 -1 0 1 2at 1926.219 kb on - strandat 1926.404 kb on - strandat 1926.404 kb on - strandat 1926.404 kb on - strandat 1926.601 kb on + strandat 1926.601 kb on + strand, within Ga0059261_1814at 1926.601 kb on + strand, within Ga0059261_1814at 1926.602 kb on - strand, within Ga0059261_1814at 1926.602 kb on - strand, within Ga0059261_1814at 1926.602 kb on - strand, within Ga0059261_1814at 1926.602 kb on - strand, within Ga0059261_1814at 1926.602 kb on - strand, within Ga0059261_1814at 1926.602 kb on - strand, within Ga0059261_1814at 1926.602 kb on - strand, within Ga0059261_1814at 1926.602 kb on - strand, within Ga0059261_1814at 1926.602 kb on - strand, within Ga0059261_1814at 1926.602 kb on - strand, within Ga0059261_1814at 1926.633 kb on - strand, within Ga0059261_1814at 1926.633 kb on - strand, within Ga0059261_1814at 1926.902 kb on + strand, within Ga0059261_1814at 1927.107 kb on + strandat 1927.108 kb on - strandat 1927.127 kb on + strandat 1927.128 kb on - strandat 1927.128 kb on - strandat 1927.128 kb on - strandat 1927.154 kb on - strandat 1927.315 kb on + strand, within Ga0059261_1815at 1927.315 kb on + strand, within Ga0059261_1815at 1927.315 kb on + strand, within Ga0059261_1815at 1927.316 kb on - strand, within Ga0059261_1815at 1927.316 kb on - strandat 1927.316 kb on - strand, within Ga0059261_1815at 1927.582 kb on + strand, within Ga0059261_1815at 1927.582 kb on + strand, within Ga0059261_1815at 1927.582 kb on + strand, within Ga0059261_1815at 1927.582 kb on + strand, within Ga0059261_1815at 1927.582 kb on + strand, within Ga0059261_1815at 1927.582 kb on + strand, within Ga0059261_1815at 1927.583 kb on - strand, within Ga0059261_1815at 1927.583 kb on - strand, within Ga0059261_1815at 1927.583 kb on - strand, within Ga0059261_1815at 1927.583 kb on - strandat 1927.583 kb on - strand, within Ga0059261_1815at 1927.583 kb on - strand, within Ga0059261_1815at 1927.612 kb on + strand, within Ga0059261_1815at 1927.612 kb on + strand, within Ga0059261_1815at 1927.613 kb on - strand, within Ga0059261_1815at 1927.613 kb on - strand, within Ga0059261_1815at 1927.654 kb on + strand, within Ga0059261_1815at 1927.654 kb on + strand, within Ga0059261_1815at 1927.654 kb on + strand, within Ga0059261_1815at 1927.654 kb on + strand, within Ga0059261_1815at 1927.654 kb on + strand, within Ga0059261_1815at 1927.654 kb on + strand, within Ga0059261_1815at 1927.654 kb on + strand, within Ga0059261_1815at 1927.655 kb on - strand, within Ga0059261_1815at 1927.655 kb on - strand, within Ga0059261_1815at 1927.718 kb on + strand, within Ga0059261_1815at 1927.718 kb on + strand, within Ga0059261_1815at 1927.719 kb on - strand, within Ga0059261_1815at 1927.719 kb on - strand, within Ga0059261_1815at 1927.719 kb on - strand, within Ga0059261_1815at 1927.719 kb on - strand, within Ga0059261_1815at 1927.719 kb on - strand, within Ga0059261_1815at 1927.719 kb on - strandat 1927.719 kb on - strand, within Ga0059261_1815at 1927.719 kb on - strand, within Ga0059261_1815at 1927.719 kb on - strand, within Ga0059261_1815at 1927.719 kb on - strand, within Ga0059261_1815at 1928.112 kb on + strandat 1928.133 kb on + strandat 1928.133 kb on + strandat 1928.133 kb on + strandat 1928.133 kb on + strandat 1928.134 kb on - strandat 1928.134 kb on - strandat 1928.163 kb on + strand, within Ga0059261_1816at 1928.163 kb on + strand, within Ga0059261_1816at 1928.163 kb on + strand, within Ga0059261_1816at 1928.163 kb on + strand, within Ga0059261_1816at 1928.164 kb on - strand, within Ga0059261_1816at 1928.220 kb on - strand, within Ga0059261_1816at 1928.220 kb on - strand, within Ga0059261_1816at 1928.220 kb on - strand, within Ga0059261_1816at 1928.229 kb on + strand, within Ga0059261_1816at 1928.229 kb on + strand, within Ga0059261_1816at 1928.230 kb on - strand, within Ga0059261_1816at 1928.230 kb on - strandat 1928.230 kb on - strand, within Ga0059261_1816at 1928.241 kb on - strand, within Ga0059261_1816at 1928.241 kb on - strand, within Ga0059261_1816at 1928.299 kb on + strand, within Ga0059261_1816at 1928.300 kb on - strand, within Ga0059261_1816at 1928.300 kb on - strand, within Ga0059261_1816at 1928.300 kb on - strand, within Ga0059261_1816at 1928.300 kb on - strand, within Ga0059261_1816at 1928.315 kb on + strand, within Ga0059261_1816at 1928.315 kb on + strand, within Ga0059261_1816at 1928.315 kb on + strand, within Ga0059261_1816at 1928.315 kb on + strand, within Ga0059261_1816at 1928.315 kb on + strand, within Ga0059261_1816at 1928.315 kb on + strand, within Ga0059261_1816at 1928.316 kb on - strand, within Ga0059261_1816at 1928.316 kb on - strand, within Ga0059261_1816at 1928.316 kb on - strand, within Ga0059261_1816at 1928.316 kb on - strand, within Ga0059261_1816at 1928.316 kb on - strand, within Ga0059261_1816at 1928.316 kb on - strand, within Ga0059261_1816at 1928.342 kb on + strand, within Ga0059261_1816at 1928.342 kb on + strand, within Ga0059261_1816at 1928.342 kb on + strand, within Ga0059261_1816at 1928.342 kb on + strand, within Ga0059261_1816at 1928.342 kb on + strand, within Ga0059261_1816at 1928.342 kb on + strand, within Ga0059261_1816at 1928.342 kb on + strand, within Ga0059261_1816at 1928.342 kb on + strand, within Ga0059261_1816at 1928.342 kb on + strand, within Ga0059261_1816at 1928.342 kb on + strand, within Ga0059261_1816at 1928.343 kb on - strand, within Ga0059261_1816at 1928.343 kb on - strand, within Ga0059261_1816at 1928.343 kb on - strand, within Ga0059261_1816at 1928.343 kb on - strand, within Ga0059261_1816at 1928.343 kb on - strand, within Ga0059261_1816at 1928.343 kb on - strand, within Ga0059261_1816at 1928.343 kb on - strand, within Ga0059261_1816at 1928.343 kb on - strand, within Ga0059261_1816at 1928.343 kb on - strand, within Ga0059261_1816at 1928.347 kb on + strand, within Ga0059261_1816at 1928.347 kb on + strand, within Ga0059261_1816at 1928.347 kb on + strand, within Ga0059261_1816at 1928.347 kb on + strand, within Ga0059261_1816at 1928.347 kb on + strand, within Ga0059261_1816at 1928.347 kb on + strand, within Ga0059261_1816at 1928.347 kb on + strand, within Ga0059261_1816at 1928.347 kb on + strand, within Ga0059261_1816at 1928.348 kb on - strand, within Ga0059261_1816at 1928.348 kb on - strand, within Ga0059261_1816at 1928.348 kb on - strand, within Ga0059261_1816at 1928.348 kb on - strand, within Ga0059261_1816at 1928.348 kb on - strand, within Ga0059261_1816at 1928.348 kb on - strand, within Ga0059261_1816at 1928.348 kb on - strand, within Ga0059261_1816at 1928.348 kb on - strand, within Ga0059261_1816at 1928.348 kb on - strand, within Ga0059261_1816at 1928.349 kb on + strand, within Ga0059261_1816at 1928.349 kb on + strand, within Ga0059261_1816at 1928.349 kb on + strand, within Ga0059261_1816at 1928.349 kb on + strand, within Ga0059261_1816at 1928.349 kb on + strand, within Ga0059261_1816at 1928.349 kb on + strand, within Ga0059261_1816at 1928.349 kb on + strand, within Ga0059261_1816at 1928.349 kb on + strandat 1928.349 kb on + strand, within Ga0059261_1816at 1928.349 kb on + strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.350 kb on - strand, within Ga0059261_1816at 1928.434 kb on + strandat 1928.434 kb on + strandat 1928.434 kb on + strandat 1928.434 kb on + strandat 1928.435 kb on - strandat 1928.435 kb on - strandat 1928.435 kb on - strandat 1928.435 kb on - strandat 1928.435 kb on - strandat 1928.447 kb on + strandat 1928.447 kb on + strandat 1928.448 kb on - strandat 1928.448 kb on - strandat 1928.448 kb on - strandat 1928.448 kb on - strandat 1928.448 kb on - strandat 1928.448 kb on - strandat 1928.448 kb on - strandat 1928.448 kb on - strandat 1928.448 kb on - strandat 1928.468 kb on + strandat 1928.939 kb on + strandat 1928.939 kb on + strandat 1928.939 kb on + strandat 1928.939 kb on + strandat 1928.939 kb on + strandat 1928.939 kb on + strandat 1928.940 kb on - strandat 1928.940 kb on - strandat 1928.940 kb on - strandat 1928.940 kb on - strandat 1928.940 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,926,219 - -1.7
1,926,404 - +0.2
1,926,404 - +0.7
1,926,404 - +0.6
1,926,601 + +0.4
1,926,601 + Ga0059261_1814 0.25 +0.0
1,926,601 + Ga0059261_1814 0.25 +0.3
1,926,602 - Ga0059261_1814 0.25 +0.3
1,926,602 - Ga0059261_1814 0.25 +0.2
1,926,602 - Ga0059261_1814 0.25 +0.6
1,926,602 - Ga0059261_1814 0.25 +0.2
1,926,602 - Ga0059261_1814 0.25 +0.2
1,926,602 - Ga0059261_1814 0.25 +0.3
1,926,602 - Ga0059261_1814 0.25 +1.3
1,926,602 - Ga0059261_1814 0.25 -0.2
1,926,602 - Ga0059261_1814 0.25 +0.7
1,926,602 - Ga0059261_1814 0.25 -0.0
1,926,633 - Ga0059261_1814 0.29 +0.2
1,926,633 - Ga0059261_1814 0.29 +0.3
1,926,902 + Ga0059261_1814 0.64 -0.3
1,927,107 + +0.0
1,927,108 - -0.4
1,927,127 + -0.5
1,927,128 - +0.7
1,927,128 - +0.4
1,927,128 - -0.1
1,927,154 - -0.4
1,927,315 + Ga0059261_1815 0.17 +0.4
1,927,315 + Ga0059261_1815 0.17 +0.5
1,927,315 + Ga0059261_1815 0.17 +0.4
1,927,316 - Ga0059261_1815 0.17 +0.7
1,927,316 - +0.6
1,927,316 - Ga0059261_1815 0.17 +0.8
1,927,582 + Ga0059261_1815 0.52 +0.1
1,927,582 + Ga0059261_1815 0.52 -0.3
1,927,582 + Ga0059261_1815 0.52 +0.4
1,927,582 + Ga0059261_1815 0.52 +0.5
1,927,582 + Ga0059261_1815 0.52 +1.2
1,927,582 + Ga0059261_1815 0.52 +0.7
1,927,583 - Ga0059261_1815 0.52 +0.1
1,927,583 - Ga0059261_1815 0.52 -1.3
1,927,583 - Ga0059261_1815 0.52 -0.4
1,927,583 - -1.0
1,927,583 - Ga0059261_1815 0.52 +0.7
1,927,583 - Ga0059261_1815 0.52 -0.2
1,927,612 + Ga0059261_1815 0.55 -0.1
1,927,612 + Ga0059261_1815 0.55 +1.1
1,927,613 - Ga0059261_1815 0.56 +0.7
1,927,613 - Ga0059261_1815 0.56 +0.2
1,927,654 + Ga0059261_1815 0.61 +0.8
1,927,654 + Ga0059261_1815 0.61 +0.1
1,927,654 + Ga0059261_1815 0.61 +0.7
1,927,654 + Ga0059261_1815 0.61 +0.8
1,927,654 + Ga0059261_1815 0.61 +0.6
1,927,654 + Ga0059261_1815 0.61 -1.6
1,927,654 + Ga0059261_1815 0.61 +0.6
1,927,655 - Ga0059261_1815 0.61 +0.4
1,927,655 - Ga0059261_1815 0.61 +0.2
1,927,718 + Ga0059261_1815 0.69 +0.5
1,927,718 + Ga0059261_1815 0.69 +0.4
1,927,719 - Ga0059261_1815 0.69 +0.5
1,927,719 - Ga0059261_1815 0.69 +1.4
1,927,719 - Ga0059261_1815 0.69 +0.0
1,927,719 - Ga0059261_1815 0.69 +0.2
1,927,719 - Ga0059261_1815 0.69 +0.4
1,927,719 - +0.0
1,927,719 - Ga0059261_1815 0.69 +0.0
1,927,719 - Ga0059261_1815 0.69 -0.1
1,927,719 - Ga0059261_1815 0.69 +0.3
1,927,719 - Ga0059261_1815 0.69 +0.0
1,928,112 + +0.3
1,928,133 + +0.3
1,928,133 + +0.4
1,928,133 + +0.3
1,928,133 + +1.2
1,928,134 - +0.5
1,928,134 - +0.5
1,928,163 + Ga0059261_1816 0.11 +2.1
1,928,163 + Ga0059261_1816 0.11 +0.1
1,928,163 + Ga0059261_1816 0.11 +0.2
1,928,163 + Ga0059261_1816 0.11 -0.9
1,928,164 - Ga0059261_1816 0.12 +0.2
1,928,220 - Ga0059261_1816 0.32 -0.9
1,928,220 - Ga0059261_1816 0.32 +0.0
1,928,220 - Ga0059261_1816 0.32 +0.1
1,928,229 + Ga0059261_1816 0.36 +0.1
1,928,229 + Ga0059261_1816 0.36 -0.4
1,928,230 - Ga0059261_1816 0.36 +1.1
1,928,230 - +0.3
1,928,230 - Ga0059261_1816 0.36 -0.0
1,928,241 - Ga0059261_1816 0.40 +0.3
1,928,241 - Ga0059261_1816 0.40 +0.3
1,928,299 + Ga0059261_1816 0.61 +0.1
1,928,300 - Ga0059261_1816 0.62 +0.5
1,928,300 - Ga0059261_1816 0.62 -0.2
1,928,300 - Ga0059261_1816 0.62 -0.0
1,928,300 - Ga0059261_1816 0.62 +0.2
1,928,315 + Ga0059261_1816 0.67 +0.2
1,928,315 + Ga0059261_1816 0.67 +0.3
1,928,315 + Ga0059261_1816 0.67 +0.8
1,928,315 + Ga0059261_1816 0.67 +0.1
1,928,315 + Ga0059261_1816 0.67 +0.6
1,928,315 + Ga0059261_1816 0.67 +0.8
1,928,316 - Ga0059261_1816 0.67 +0.0
1,928,316 - Ga0059261_1816 0.67 +0.5
1,928,316 - Ga0059261_1816 0.67 -0.7
1,928,316 - Ga0059261_1816 0.67 -0.5
1,928,316 - Ga0059261_1816 0.67 +0.1
1,928,316 - Ga0059261_1816 0.67 -0.3
1,928,342 + Ga0059261_1816 0.77 -0.7
1,928,342 + Ga0059261_1816 0.77 +0.2
1,928,342 + Ga0059261_1816 0.77 -0.1
1,928,342 + Ga0059261_1816 0.77 -0.6
1,928,342 + Ga0059261_1816 0.77 +0.4
1,928,342 + Ga0059261_1816 0.77 +0.2
1,928,342 + Ga0059261_1816 0.77 -1.2
1,928,342 + Ga0059261_1816 0.77 -0.5
1,928,342 + Ga0059261_1816 0.77 +0.7
1,928,342 + Ga0059261_1816 0.77 +0.4
1,928,343 - Ga0059261_1816 0.77 -1.1
1,928,343 - Ga0059261_1816 0.77 -0.4
1,928,343 - Ga0059261_1816 0.77 -1.1
1,928,343 - Ga0059261_1816 0.77 -0.3
1,928,343 - Ga0059261_1816 0.77 -0.8
1,928,343 - Ga0059261_1816 0.77 +0.9
1,928,343 - Ga0059261_1816 0.77 +0.1
1,928,343 - Ga0059261_1816 0.77 -0.1
1,928,343 - Ga0059261_1816 0.77 -0.7
1,928,347 + Ga0059261_1816 0.79 -0.4
1,928,347 + Ga0059261_1816 0.79 +0.6
1,928,347 + Ga0059261_1816 0.79 +0.9
1,928,347 + Ga0059261_1816 0.79 +0.3
1,928,347 + Ga0059261_1816 0.79 +0.7
1,928,347 + Ga0059261_1816 0.79 -0.4
1,928,347 + Ga0059261_1816 0.79 -0.4
1,928,347 + Ga0059261_1816 0.79 +0.1
1,928,348 - Ga0059261_1816 0.79 +0.8
1,928,348 - Ga0059261_1816 0.79 +0.0
1,928,348 - Ga0059261_1816 0.79 +1.0
1,928,348 - Ga0059261_1816 0.79 +0.1
1,928,348 - Ga0059261_1816 0.79 +0.1
1,928,348 - Ga0059261_1816 0.79 +0.3
1,928,348 - Ga0059261_1816 0.79 +0.3
1,928,348 - Ga0059261_1816 0.79 +0.0
1,928,348 - Ga0059261_1816 0.79 +0.2
1,928,349 + Ga0059261_1816 0.79 -0.1
1,928,349 + Ga0059261_1816 0.79 +0.2
1,928,349 + Ga0059261_1816 0.79 +1.0
1,928,349 + Ga0059261_1816 0.79 +0.0
1,928,349 + Ga0059261_1816 0.79 -0.1
1,928,349 + Ga0059261_1816 0.79 -0.3
1,928,349 + Ga0059261_1816 0.79 +0.1
1,928,349 + -0.4
1,928,349 + Ga0059261_1816 0.79 -1.0
1,928,349 + Ga0059261_1816 0.79 +0.8
1,928,350 - Ga0059261_1816 0.80 +0.9
1,928,350 - Ga0059261_1816 0.80 -0.7
1,928,350 - Ga0059261_1816 0.80 -1.6
1,928,350 - Ga0059261_1816 0.80 +0.8
1,928,350 - Ga0059261_1816 0.80 -0.5
1,928,350 - Ga0059261_1816 0.80 -0.4
1,928,350 - Ga0059261_1816 0.80 -0.6
1,928,350 - Ga0059261_1816 0.80 +0.0
1,928,350 - Ga0059261_1816 0.80 -0.3
1,928,350 - Ga0059261_1816 0.80 -1.1
1,928,350 - Ga0059261_1816 0.80 +0.4
1,928,350 - Ga0059261_1816 0.80 -2.7
1,928,350 - Ga0059261_1816 0.80 +0.3
1,928,350 - Ga0059261_1816 0.80 -0.0
1,928,350 - Ga0059261_1816 0.80 -0.0
1,928,350 - Ga0059261_1816 0.80 -0.4
1,928,434 + -0.4
1,928,434 + +0.5
1,928,434 + +0.1
1,928,434 + +1.0
1,928,435 - +0.3
1,928,435 - -0.4
1,928,435 - -1.2
1,928,435 - +0.3
1,928,435 - +0.2
1,928,447 + -0.6
1,928,447 + -1.6
1,928,448 - -0.7
1,928,448 - +0.5
1,928,448 - +0.1
1,928,448 - -0.1
1,928,448 - +0.0
1,928,448 - -0.5
1,928,448 - +0.2
1,928,448 - -0.0
1,928,448 - +0.7
1,928,468 + -0.9
1,928,939 + -0.1
1,928,939 + +1.1
1,928,939 + +0.6
1,928,939 + +1.3
1,928,939 + +2.0
1,928,939 + +0.3
1,928,940 - -0.5
1,928,940 - +0.7
1,928,940 - +0.5
1,928,940 - +0.8
1,928,940 - +0.0

Or see this region's nucleotide sequence