Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1652

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1651 and Ga0059261_1652 are separated by 191 nucleotidesGa0059261_1652 and Ga0059261_1653 overlap by 16 nucleotides Ga0059261_1651: Ga0059261_1651 - TonB dependent receptor/TonB-dependent Receptor Plug Domain, at 1,741,187 to 1,744,051 _1651 Ga0059261_1652: Ga0059261_1652 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 1,744,243 to 1,745,217 _1652 Ga0059261_1653: Ga0059261_1653 - Uncharacterized conserved protein, at 1,745,202 to 1,746,212 _1653 Position (kb) 1744 1745 1746Strain fitness (log2 ratio) -3 -2 -1 0 1at 1743.364 kb on + strand, within Ga0059261_1651at 1743.365 kb on - strand, within Ga0059261_1651at 1743.365 kb on - strand, within Ga0059261_1651at 1743.491 kb on + strand, within Ga0059261_1651at 1743.492 kb on - strand, within Ga0059261_1651at 1743.492 kb on - strand, within Ga0059261_1651at 1743.492 kb on - strand, within Ga0059261_1651at 1743.492 kb on - strandat 1743.552 kb on + strand, within Ga0059261_1651at 1743.581 kb on - strand, within Ga0059261_1651at 1743.651 kb on + strand, within Ga0059261_1651at 1743.652 kb on - strand, within Ga0059261_1651at 1743.652 kb on - strand, within Ga0059261_1651at 1743.652 kb on - strand, within Ga0059261_1651at 1743.652 kb on - strand, within Ga0059261_1651at 1743.687 kb on + strand, within Ga0059261_1651at 1743.687 kb on + strand, within Ga0059261_1651at 1743.687 kb on + strand, within Ga0059261_1651at 1743.687 kb on + strand, within Ga0059261_1651at 1743.688 kb on - strand, within Ga0059261_1651at 1743.688 kb on - strand, within Ga0059261_1651at 1744.031 kb on - strandat 1744.068 kb on - strandat 1744.093 kb on + strandat 1744.094 kb on - strandat 1744.094 kb on - strandat 1744.094 kb on - strandat 1744.094 kb on - strandat 1744.096 kb on - strandat 1744.132 kb on + strandat 1744.133 kb on - strandat 1744.274 kb on + strandat 1744.274 kb on + strandat 1744.274 kb on + strandat 1745.064 kb on - strand, within Ga0059261_1652at 1745.203 kb on + strandat 1745.203 kb on + strandat 1745.204 kb on - strandat 1745.204 kb on - strandat 1745.444 kb on + strand, within Ga0059261_1653at 1745.444 kb on + strand, within Ga0059261_1653at 1745.444 kb on + strand, within Ga0059261_1653at 1745.444 kb on + strand, within Ga0059261_1653at 1745.444 kb on + strand, within Ga0059261_1653at 1745.445 kb on - strand, within Ga0059261_1653at 1745.445 kb on - strand, within Ga0059261_1653at 1745.445 kb on - strand, within Ga0059261_1653at 1745.533 kb on + strandat 1745.533 kb on + strand, within Ga0059261_1653at 1745.533 kb on + strand, within Ga0059261_1653at 1745.534 kb on - strand, within Ga0059261_1653at 1745.534 kb on - strand, within Ga0059261_1653at 1745.534 kb on - strand, within Ga0059261_1653at 1745.534 kb on - strand, within Ga0059261_1653at 1745.534 kb on - strand, within Ga0059261_1653at 1745.534 kb on - strand, within Ga0059261_1653at 1745.752 kb on + strand, within Ga0059261_1653at 1745.752 kb on + strand, within Ga0059261_1653at 1745.752 kb on + strand, within Ga0059261_1653at 1745.752 kb on + strand, within Ga0059261_1653at 1745.753 kb on - strand, within Ga0059261_1653at 1745.753 kb on - strand, within Ga0059261_1653at 1745.753 kb on - strand, within Ga0059261_1653at 1745.753 kb on - strand, within Ga0059261_1653at 1745.753 kb on - strand, within Ga0059261_1653at 1745.753 kb on - strand, within Ga0059261_1653at 1745.753 kb on - strand, within Ga0059261_1653at 1745.753 kb on - strand, within Ga0059261_1653at 1745.753 kb on - strand, within Ga0059261_1653at 1745.753 kb on - strand, within Ga0059261_1653at 1745.753 kb on - strand, within Ga0059261_1653at 1745.753 kb on - strand, within Ga0059261_1653at 1745.753 kb on - strand, within Ga0059261_1653at 1745.753 kb on - strand, within Ga0059261_1653at 1745.936 kb on + strand, within Ga0059261_1653at 1746.187 kb on + strandat 1746.187 kb on + strandat 1746.187 kb on + strandat 1746.187 kb on + strandat 1746.187 kb on + strandat 1746.188 kb on - strandat 1746.188 kb on - strandat 1746.188 kb on - strandat 1746.188 kb on - strandat 1746.188 kb on - strandat 1746.188 kb on - strandat 1746.188 kb on - strandat 1746.196 kb on + strandat 1746.196 kb on + strandat 1746.197 kb on - strandat 1746.212 kb on + strandat 1746.212 kb on + strandat 1746.212 kb on + strandat 1746.212 kb on + strandat 1746.212 kb on + strandat 1746.212 kb on + strandat 1746.213 kb on - strandat 1746.213 kb on - strandat 1746.213 kb on - strandat 1746.213 kb on - strandat 1746.213 kb on - strandat 1746.213 kb on - strandat 1746.213 kb on - strandat 1746.213 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,743,364 + Ga0059261_1651 0.76 -0.3
1,743,365 - Ga0059261_1651 0.76 -0.5
1,743,365 - Ga0059261_1651 0.76 -0.8
1,743,491 + Ga0059261_1651 0.80 +0.7
1,743,492 - Ga0059261_1651 0.80 +0.6
1,743,492 - Ga0059261_1651 0.80 +0.9
1,743,492 - Ga0059261_1651 0.80 +0.1
1,743,492 - -0.0
1,743,552 + Ga0059261_1651 0.83 +0.1
1,743,581 - Ga0059261_1651 0.84 +0.1
1,743,651 + Ga0059261_1651 0.86 +0.1
1,743,652 - Ga0059261_1651 0.86 -0.1
1,743,652 - Ga0059261_1651 0.86 -0.3
1,743,652 - Ga0059261_1651 0.86 +1.5
1,743,652 - Ga0059261_1651 0.86 +0.5
1,743,687 + Ga0059261_1651 0.87 -0.5
1,743,687 + Ga0059261_1651 0.87 +0.0
1,743,687 + Ga0059261_1651 0.87 -1.3
1,743,687 + Ga0059261_1651 0.87 -0.0
1,743,688 - Ga0059261_1651 0.87 +1.5
1,743,688 - Ga0059261_1651 0.87 -0.4
1,744,031 - -0.7
1,744,068 - -0.8
1,744,093 + +0.4
1,744,094 - -0.4
1,744,094 - +0.3
1,744,094 - +0.7
1,744,094 - -0.2
1,744,096 - +0.7
1,744,132 + -1.0
1,744,133 - -2.9
1,744,274 + +0.6
1,744,274 + -0.0
1,744,274 + +0.5
1,745,064 - Ga0059261_1652 0.84 +0.4
1,745,203 + +1.2
1,745,203 + -1.3
1,745,204 - -1.5
1,745,204 - +0.7
1,745,444 + Ga0059261_1653 0.24 -0.1
1,745,444 + Ga0059261_1653 0.24 +0.7
1,745,444 + Ga0059261_1653 0.24 -0.6
1,745,444 + Ga0059261_1653 0.24 -0.3
1,745,444 + Ga0059261_1653 0.24 -0.7
1,745,445 - Ga0059261_1653 0.24 +0.9
1,745,445 - Ga0059261_1653 0.24 -0.3
1,745,445 - Ga0059261_1653 0.24 +0.7
1,745,533 + -1.4
1,745,533 + Ga0059261_1653 0.33 -1.3
1,745,533 + Ga0059261_1653 0.33 +0.6
1,745,534 - Ga0059261_1653 0.33 -0.1
1,745,534 - Ga0059261_1653 0.33 +0.2
1,745,534 - Ga0059261_1653 0.33 -1.3
1,745,534 - Ga0059261_1653 0.33 -0.0
1,745,534 - Ga0059261_1653 0.33 -0.1
1,745,534 - Ga0059261_1653 0.33 +0.4
1,745,752 + Ga0059261_1653 0.54 +0.1
1,745,752 + Ga0059261_1653 0.54 +0.8
1,745,752 + Ga0059261_1653 0.54 -0.8
1,745,752 + Ga0059261_1653 0.54 -0.4
1,745,753 - Ga0059261_1653 0.55 -1.2
1,745,753 - Ga0059261_1653 0.55 -0.3
1,745,753 - Ga0059261_1653 0.55 +0.4
1,745,753 - Ga0059261_1653 0.55 +0.4
1,745,753 - Ga0059261_1653 0.55 -0.2
1,745,753 - Ga0059261_1653 0.55 -0.0
1,745,753 - Ga0059261_1653 0.55 +0.1
1,745,753 - Ga0059261_1653 0.55 -0.3
1,745,753 - Ga0059261_1653 0.55 -0.2
1,745,753 - Ga0059261_1653 0.55 -0.1
1,745,753 - Ga0059261_1653 0.55 -0.4
1,745,753 - Ga0059261_1653 0.55 +0.2
1,745,753 - Ga0059261_1653 0.55 +0.2
1,745,753 - Ga0059261_1653 0.55 -1.8
1,745,936 + Ga0059261_1653 0.73 -0.2
1,746,187 + -0.8
1,746,187 + -0.4
1,746,187 + +0.2
1,746,187 + -1.0
1,746,187 + -0.9
1,746,188 - +0.6
1,746,188 - +0.3
1,746,188 - +1.3
1,746,188 - +0.6
1,746,188 - +0.6
1,746,188 - -0.0
1,746,188 - +0.1
1,746,196 + +0.4
1,746,196 + +0.2
1,746,197 - +0.1
1,746,212 + -0.1
1,746,212 + +0.0
1,746,212 + +0.2
1,746,212 + +0.1
1,746,212 + +0.6
1,746,212 + +0.3
1,746,213 - +0.1
1,746,213 - +0.3
1,746,213 - +0.0
1,746,213 - -0.3
1,746,213 - +0.1
1,746,213 - +0.5
1,746,213 - -0.1
1,746,213 - +0.4

Or see this region's nucleotide sequence