Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1574

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1572 and Ga0059261_1573 are separated by 77 nucleotidesGa0059261_1573 and Ga0059261_1574 are separated by 99 nucleotidesGa0059261_1574 and Ga0059261_1575 overlap by 4 nucleotidesGa0059261_1575 and Ga0059261_1576 overlap by 4 nucleotides Ga0059261_1572: Ga0059261_1572 - FAD/FMN-containing dehydrogenases, at 1,643,068 to 1,644,510 _1572 Ga0059261_1573: Ga0059261_1573 - hypothetical protein, at 1,644,588 to 1,645,064 _1573 Ga0059261_1574: Ga0059261_1574 - Superfamily II DNA and RNA helicases, at 1,645,164 to 1,646,561 _1574 Ga0059261_1575: Ga0059261_1575 - Protein of unknown function (DUF1289), at 1,646,558 to 1,646,761 _1575 Ga0059261_1576: Ga0059261_1576 - 5'-deoxy-5'-methylthioadenosine phosphorylase, at 1,646,758 to 1,647,627 _1576 Position (kb) 1645 1646 1647Strain fitness (log2 ratio) -3 -2 -1 0 1at 1644.572 kb on + strandat 1644.573 kb on - strandat 1644.573 kb on - strandat 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.940 kb on - strand, within Ga0059261_1573at 1644.940 kb on - strand, within Ga0059261_1573at 1644.940 kb on - strandat 1644.940 kb on - strand, within Ga0059261_1573at 1644.940 kb on - strand, within Ga0059261_1573at 1644.951 kb on + strand, within Ga0059261_1573at 1644.952 kb on - strand, within Ga0059261_1573at 1644.952 kb on - strand, within Ga0059261_1573at 1645.028 kb on + strandat 1645.029 kb on - strandat 1645.062 kb on + strandat 1645.063 kb on - strandat 1645.084 kb on + strandat 1645.084 kb on + strandat 1645.084 kb on + strandat 1645.085 kb on - strandat 1645.085 kb on - strandat 1646.296 kb on + strand, within Ga0059261_1574at 1646.296 kb on + strand, within Ga0059261_1574at 1646.759 kb on + strandat 1646.759 kb on + strandat 1646.760 kb on - strandat 1646.760 kb on - strandat 1646.835 kb on + strandat 1646.836 kb on - strandat 1646.836 kb on - strandat 1646.848 kb on + strand, within Ga0059261_1576at 1646.849 kb on - strand, within Ga0059261_1576at 1646.849 kb on - strand, within Ga0059261_1576at 1646.857 kb on - strand, within Ga0059261_1576at 1646.857 kb on - strand, within Ga0059261_1576at 1646.857 kb on - strand, within Ga0059261_1576at 1646.999 kb on + strand, within Ga0059261_1576at 1647.000 kb on - strand, within Ga0059261_1576at 1647.000 kb on - strand, within Ga0059261_1576at 1647.000 kb on - strand, within Ga0059261_1576at 1647.000 kb on - strand, within Ga0059261_1576at 1647.000 kb on - strand, within Ga0059261_1576at 1647.026 kb on + strand, within Ga0059261_1576at 1647.027 kb on - strand, within Ga0059261_1576at 1647.104 kb on + strand, within Ga0059261_1576at 1647.155 kb on + strand, within Ga0059261_1576at 1647.155 kb on + strand, within Ga0059261_1576at 1647.155 kb on + strand, within Ga0059261_1576at 1647.155 kb on + strand, within Ga0059261_1576at 1647.156 kb on - strand, within Ga0059261_1576at 1647.156 kb on - strand, within Ga0059261_1576at 1647.156 kb on - strand, within Ga0059261_1576at 1647.156 kb on - strand, within Ga0059261_1576at 1647.156 kb on - strand, within Ga0059261_1576at 1647.156 kb on - strand, within Ga0059261_1576at 1647.156 kb on - strand, within Ga0059261_1576at 1647.156 kb on - strand, within Ga0059261_1576at 1647.156 kb on - strand, within Ga0059261_1576at 1647.159 kb on + strand, within Ga0059261_1576at 1647.159 kb on + strand, within Ga0059261_1576at 1647.159 kb on + strand, within Ga0059261_1576at 1647.159 kb on + strand, within Ga0059261_1576at 1647.160 kb on - strand, within Ga0059261_1576at 1647.272 kb on + strand, within Ga0059261_1576at 1647.272 kb on + strand, within Ga0059261_1576at 1647.272 kb on + strand, within Ga0059261_1576at 1647.272 kb on + strand, within Ga0059261_1576at 1647.272 kb on + strand, within Ga0059261_1576at 1647.272 kb on + strand, within Ga0059261_1576at 1647.273 kb on - strand, within Ga0059261_1576at 1647.273 kb on - strand, within Ga0059261_1576at 1647.273 kb on - strand, within Ga0059261_1576at 1647.273 kb on - strand, within Ga0059261_1576at 1647.331 kb on - strand, within Ga0059261_1576

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,644,572 + +0.0
1,644,573 - -0.8
1,644,573 - -1.0
1,644,939 + Ga0059261_1573 0.74 -2.9
1,644,939 + Ga0059261_1573 0.74 -3.7
1,644,939 + Ga0059261_1573 0.74 -0.3
1,644,939 + Ga0059261_1573 0.74 -2.7
1,644,939 + Ga0059261_1573 0.74 -1.7
1,644,939 + Ga0059261_1573 0.74 -0.1
1,644,939 + Ga0059261_1573 0.74 -1.7
1,644,939 + Ga0059261_1573 0.74 -0.9
1,644,939 + Ga0059261_1573 0.74 +0.5
1,644,940 - Ga0059261_1573 0.74 -3.2
1,644,940 - Ga0059261_1573 0.74 -1.5
1,644,940 - -0.5
1,644,940 - Ga0059261_1573 0.74 -2.7
1,644,940 - Ga0059261_1573 0.74 -1.5
1,644,951 + Ga0059261_1573 0.76 -1.2
1,644,952 - Ga0059261_1573 0.76 -1.8
1,644,952 - Ga0059261_1573 0.76 -2.2
1,645,028 + -1.7
1,645,029 - -1.9
1,645,062 + +0.1
1,645,063 - +0.7
1,645,084 + -1.0
1,645,084 + -0.3
1,645,084 + -0.9
1,645,085 - +0.4
1,645,085 - +0.4
1,646,296 + Ga0059261_1574 0.81 +0.2
1,646,296 + Ga0059261_1574 0.81 +0.3
1,646,759 + -0.6
1,646,759 + +0.1
1,646,760 - +0.3
1,646,760 - +0.4
1,646,835 + -0.4
1,646,836 - +0.3
1,646,836 - +0.3
1,646,848 + Ga0059261_1576 0.10 -0.3
1,646,849 - Ga0059261_1576 0.10 +0.1
1,646,849 - Ga0059261_1576 0.10 -1.1
1,646,857 - Ga0059261_1576 0.11 +0.3
1,646,857 - Ga0059261_1576 0.11 -0.3
1,646,857 - Ga0059261_1576 0.11 -1.6
1,646,999 + Ga0059261_1576 0.28 -0.8
1,647,000 - Ga0059261_1576 0.28 -0.2
1,647,000 - Ga0059261_1576 0.28 -0.0
1,647,000 - Ga0059261_1576 0.28 +0.2
1,647,000 - Ga0059261_1576 0.28 -0.2
1,647,000 - Ga0059261_1576 0.28 +0.6
1,647,026 + Ga0059261_1576 0.31 +0.2
1,647,027 - Ga0059261_1576 0.31 +0.0
1,647,104 + Ga0059261_1576 0.40 -0.6
1,647,155 + Ga0059261_1576 0.46 -0.6
1,647,155 + Ga0059261_1576 0.46 +0.4
1,647,155 + Ga0059261_1576 0.46 -0.1
1,647,155 + Ga0059261_1576 0.46 -0.0
1,647,156 - Ga0059261_1576 0.46 +0.7
1,647,156 - Ga0059261_1576 0.46 -0.6
1,647,156 - Ga0059261_1576 0.46 +1.0
1,647,156 - Ga0059261_1576 0.46 -0.1
1,647,156 - Ga0059261_1576 0.46 +0.0
1,647,156 - Ga0059261_1576 0.46 -0.4
1,647,156 - Ga0059261_1576 0.46 -0.3
1,647,156 - Ga0059261_1576 0.46 -0.5
1,647,156 - Ga0059261_1576 0.46 +0.4
1,647,159 + Ga0059261_1576 0.46 -0.2
1,647,159 + Ga0059261_1576 0.46 +0.7
1,647,159 + Ga0059261_1576 0.46 -0.8
1,647,159 + Ga0059261_1576 0.46 +0.3
1,647,160 - Ga0059261_1576 0.46 -0.5
1,647,272 + Ga0059261_1576 0.59 +1.1
1,647,272 + Ga0059261_1576 0.59 -0.3
1,647,272 + Ga0059261_1576 0.59 +0.2
1,647,272 + Ga0059261_1576 0.59 -0.0
1,647,272 + Ga0059261_1576 0.59 -0.1
1,647,272 + Ga0059261_1576 0.59 -0.3
1,647,273 - Ga0059261_1576 0.59 +1.0
1,647,273 - Ga0059261_1576 0.59 -0.2
1,647,273 - Ga0059261_1576 0.59 +0.3
1,647,273 - Ga0059261_1576 0.59 -0.4
1,647,331 - Ga0059261_1576 0.66 -0.0

Or see this region's nucleotide sequence