Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1462

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1461 and Ga0059261_1462 are separated by 67 nucleotidesGa0059261_1462 and Ga0059261_1463 are separated by 182 nucleotides Ga0059261_1461: Ga0059261_1461 - Metal-dependent hydrolase, at 1,541,208 to 1,542,050 _1461 Ga0059261_1462: Ga0059261_1462 - Transcriptional regulators, at 1,542,118 to 1,543,122 _1462 Ga0059261_1463: Ga0059261_1463 - TonB-dependent receptor, at 1,543,305 to 1,545,911 _1463 Position (kb) 1542 1543 1544Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1541.641 kb on + strand, within Ga0059261_1461at 1541.641 kb on + strand, within Ga0059261_1461at 1541.734 kb on + strand, within Ga0059261_1461at 1541.734 kb on + strand, within Ga0059261_1461at 1541.735 kb on - strand, within Ga0059261_1461at 1541.747 kb on + strand, within Ga0059261_1461at 1541.747 kb on + strand, within Ga0059261_1461at 1541.747 kb on + strand, within Ga0059261_1461at 1541.747 kb on + strand, within Ga0059261_1461at 1541.747 kb on + strand, within Ga0059261_1461at 1541.747 kb on + strand, within Ga0059261_1461at 1541.748 kb on - strand, within Ga0059261_1461at 1541.748 kb on - strand, within Ga0059261_1461at 1541.748 kb on - strand, within Ga0059261_1461at 1541.748 kb on - strand, within Ga0059261_1461at 1541.794 kb on + strand, within Ga0059261_1461at 1541.795 kb on - strand, within Ga0059261_1461at 1541.795 kb on - strand, within Ga0059261_1461at 1542.045 kb on + strandat 1542.045 kb on + strandat 1542.046 kb on - strandat 1542.046 kb on - strandat 1542.046 kb on - strandat 1542.050 kb on + strandat 1542.050 kb on + strandat 1542.050 kb on + strandat 1542.050 kb on + strandat 1542.050 kb on + strandat 1542.050 kb on + strandat 1542.050 kb on + strandat 1542.051 kb on - strandat 1542.051 kb on - strandat 1542.051 kb on - strandat 1542.051 kb on - strandat 1542.051 kb on - strandat 1542.090 kb on + strandat 1542.090 kb on + strandat 1542.090 kb on + strandat 1542.090 kb on + strandat 1542.090 kb on + strandat 1542.090 kb on + strandat 1542.091 kb on - strandat 1542.091 kb on - strandat 1542.091 kb on - strandat 1542.340 kb on + strand, within Ga0059261_1462at 1542.340 kb on + strand, within Ga0059261_1462at 1542.340 kb on + strand, within Ga0059261_1462at 1542.340 kb on + strand, within Ga0059261_1462at 1542.340 kb on + strand, within Ga0059261_1462at 1542.340 kb on + strand, within Ga0059261_1462at 1542.340 kb on + strand, within Ga0059261_1462at 1542.341 kb on - strand, within Ga0059261_1462at 1542.341 kb on - strand, within Ga0059261_1462at 1542.341 kb on - strand, within Ga0059261_1462at 1542.341 kb on - strand, within Ga0059261_1462at 1542.341 kb on - strand, within Ga0059261_1462at 1542.341 kb on - strand, within Ga0059261_1462at 1542.341 kb on - strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.343 kb on + strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.344 kb on - strand, within Ga0059261_1462at 1542.349 kb on + strand, within Ga0059261_1462at 1542.349 kb on + strand, within Ga0059261_1462at 1542.349 kb on + strandat 1542.350 kb on - strand, within Ga0059261_1462at 1542.350 kb on - strand, within Ga0059261_1462at 1542.350 kb on - strand, within Ga0059261_1462at 1542.553 kb on + strand, within Ga0059261_1462at 1542.553 kb on + strand, within Ga0059261_1462at 1542.553 kb on + strand, within Ga0059261_1462at 1542.553 kb on + strand, within Ga0059261_1462at 1542.553 kb on + strand, within Ga0059261_1462at 1542.553 kb on + strand, within Ga0059261_1462at 1542.553 kb on + strand, within Ga0059261_1462at 1542.553 kb on + strand, within Ga0059261_1462at 1542.554 kb on - strand, within Ga0059261_1462at 1542.554 kb on - strand, within Ga0059261_1462at 1542.554 kb on - strand, within Ga0059261_1462at 1542.554 kb on - strand, within Ga0059261_1462at 1542.787 kb on + strand, within Ga0059261_1462at 1542.787 kb on + strand, within Ga0059261_1462at 1542.787 kb on + strand, within Ga0059261_1462at 1542.787 kb on + strand, within Ga0059261_1462at 1542.788 kb on - strand, within Ga0059261_1462at 1542.788 kb on - strand, within Ga0059261_1462at 1542.789 kb on + strand, within Ga0059261_1462at 1542.789 kb on + strand, within Ga0059261_1462at 1542.789 kb on + strand, within Ga0059261_1462at 1542.789 kb on + strand, within Ga0059261_1462at 1542.789 kb on + strand, within Ga0059261_1462at 1542.789 kb on + strand, within Ga0059261_1462at 1542.789 kb on + strand, within Ga0059261_1462at 1542.789 kb on + strand, within Ga0059261_1462at 1542.789 kb on + strand, within Ga0059261_1462at 1542.789 kb on + strand, within Ga0059261_1462at 1542.789 kb on + strand, within Ga0059261_1462at 1542.789 kb on + strand, within Ga0059261_1462at 1542.789 kb on + strand, within Ga0059261_1462at 1542.790 kb on - strand, within Ga0059261_1462at 1542.790 kb on - strand, within Ga0059261_1462at 1542.790 kb on - strand, within Ga0059261_1462at 1542.790 kb on - strand, within Ga0059261_1462at 1542.790 kb on - strand, within Ga0059261_1462at 1542.790 kb on - strand, within Ga0059261_1462at 1542.790 kb on - strand, within Ga0059261_1462at 1542.790 kb on - strand, within Ga0059261_1462at 1542.790 kb on - strand, within Ga0059261_1462at 1542.790 kb on - strand, within Ga0059261_1462at 1542.790 kb on - strand, within Ga0059261_1462at 1542.790 kb on - strand, within Ga0059261_1462at 1542.790 kb on - strand, within Ga0059261_1462at 1543.081 kb on + strandat 1543.081 kb on + strandat 1543.081 kb on + strandat 1543.081 kb on + strandat 1543.082 kb on - strandat 1543.082 kb on - strandat 1543.120 kb on + strandat 1543.121 kb on - strandat 1543.121 kb on - strandat 1543.887 kb on + strand, within Ga0059261_1463at 1543.887 kb on + strand, within Ga0059261_1463at 1543.887 kb on + strand, within Ga0059261_1463at 1543.887 kb on + strand, within Ga0059261_1463at 1543.887 kb on + strand, within Ga0059261_1463at 1543.888 kb on - strand, within Ga0059261_1463at 1543.888 kb on - strand, within Ga0059261_1463at 1543.888 kb on - strand, within Ga0059261_1463at 1543.888 kb on - strand, within Ga0059261_1463at 1543.888 kb on - strand, within Ga0059261_1463at 1543.888 kb on - strand, within Ga0059261_1463at 1543.898 kb on + strand, within Ga0059261_1463at 1543.899 kb on - strand, within Ga0059261_1463at 1543.899 kb on - strand, within Ga0059261_1463at 1543.899 kb on - strand, within Ga0059261_1463at 1543.899 kb on - strand, within Ga0059261_1463at 1544.043 kb on + strand, within Ga0059261_1463at 1544.043 kb on + strand, within Ga0059261_1463at 1544.043 kb on + strand, within Ga0059261_1463at 1544.043 kb on + strand, within Ga0059261_1463at 1544.043 kb on + strand, within Ga0059261_1463at 1544.044 kb on - strand, within Ga0059261_1463at 1544.044 kb on - strand, within Ga0059261_1463at 1544.044 kb on - strand, within Ga0059261_1463at 1544.044 kb on - strand, within Ga0059261_1463at 1544.044 kb on - strand, within Ga0059261_1463at 1544.044 kb on - strand, within Ga0059261_1463at 1544.044 kb on - strand, within Ga0059261_1463at 1544.045 kb on + strand, within Ga0059261_1463at 1544.046 kb on - strand, within Ga0059261_1463at 1544.046 kb on - strand, within Ga0059261_1463at 1544.067 kb on + strand, within Ga0059261_1463at 1544.068 kb on - strand, within Ga0059261_1463at 1544.091 kb on + strand, within Ga0059261_1463at 1544.091 kb on + strand, within Ga0059261_1463at 1544.091 kb on + strand, within Ga0059261_1463at 1544.091 kb on + strand, within Ga0059261_1463at 1544.092 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,541,641 + Ga0059261_1461 0.51 -1.6
1,541,641 + Ga0059261_1461 0.51 -1.5
1,541,734 + Ga0059261_1461 0.62 +0.1
1,541,734 + Ga0059261_1461 0.62 -0.0
1,541,735 - Ga0059261_1461 0.63 +0.4
1,541,747 + Ga0059261_1461 0.64 +0.5
1,541,747 + Ga0059261_1461 0.64 +0.1
1,541,747 + Ga0059261_1461 0.64 +0.2
1,541,747 + Ga0059261_1461 0.64 -0.3
1,541,747 + Ga0059261_1461 0.64 -0.5
1,541,747 + Ga0059261_1461 0.64 -0.4
1,541,748 - Ga0059261_1461 0.64 +0.7
1,541,748 - Ga0059261_1461 0.64 +0.4
1,541,748 - Ga0059261_1461 0.64 -0.6
1,541,748 - Ga0059261_1461 0.64 -1.1
1,541,794 + Ga0059261_1461 0.70 +0.4
1,541,795 - Ga0059261_1461 0.70 +2.0
1,541,795 - Ga0059261_1461 0.70 -0.3
1,542,045 + +0.6
1,542,045 + -2.0
1,542,046 - -0.3
1,542,046 - +0.6
1,542,046 - +0.1
1,542,050 + +0.3
1,542,050 + -0.1
1,542,050 + -0.8
1,542,050 + -0.6
1,542,050 + +0.2
1,542,050 + -0.4
1,542,050 + +0.5
1,542,051 - +0.6
1,542,051 - -0.1
1,542,051 - -0.7
1,542,051 - -0.4
1,542,051 - +0.4
1,542,090 + +0.3
1,542,090 + +1.0
1,542,090 + +0.1
1,542,090 + +1.1
1,542,090 + -0.5
1,542,090 + -0.5
1,542,091 - +0.6
1,542,091 - +0.1
1,542,091 - -0.9
1,542,340 + Ga0059261_1462 0.22 +1.2
1,542,340 + Ga0059261_1462 0.22 +0.5
1,542,340 + Ga0059261_1462 0.22 +0.4
1,542,340 + Ga0059261_1462 0.22 -0.1
1,542,340 + Ga0059261_1462 0.22 -0.2
1,542,340 + Ga0059261_1462 0.22 +1.2
1,542,340 + Ga0059261_1462 0.22 +0.1
1,542,341 - Ga0059261_1462 0.22 +0.1
1,542,341 - Ga0059261_1462 0.22 +0.1
1,542,341 - Ga0059261_1462 0.22 -0.0
1,542,341 - Ga0059261_1462 0.22 +0.1
1,542,341 - Ga0059261_1462 0.22 -0.3
1,542,341 - Ga0059261_1462 0.22 +1.2
1,542,341 - Ga0059261_1462 0.22 +1.3
1,542,343 + Ga0059261_1462 0.22 +0.3
1,542,343 + Ga0059261_1462 0.22 +0.6
1,542,343 + Ga0059261_1462 0.22 +0.6
1,542,343 + Ga0059261_1462 0.22 +0.7
1,542,343 + Ga0059261_1462 0.22 -0.6
1,542,343 + Ga0059261_1462 0.22 +0.2
1,542,343 + Ga0059261_1462 0.22 +1.2
1,542,343 + Ga0059261_1462 0.22 -1.0
1,542,343 + Ga0059261_1462 0.22 +1.3
1,542,343 + Ga0059261_1462 0.22 +0.5
1,542,343 + Ga0059261_1462 0.22 +0.3
1,542,343 + Ga0059261_1462 0.22 -0.5
1,542,343 + Ga0059261_1462 0.22 +0.5
1,542,343 + Ga0059261_1462 0.22 +0.2
1,542,343 + Ga0059261_1462 0.22 +0.4
1,542,343 + Ga0059261_1462 0.22 +0.2
1,542,343 + Ga0059261_1462 0.22 +0.9
1,542,343 + Ga0059261_1462 0.22 +0.2
1,542,343 + Ga0059261_1462 0.22 +0.2
1,542,343 + Ga0059261_1462 0.22 +0.3
1,542,343 + Ga0059261_1462 0.22 +0.1
1,542,343 + Ga0059261_1462 0.22 +0.4
1,542,343 + Ga0059261_1462 0.22 -0.1
1,542,344 - Ga0059261_1462 0.22 +0.5
1,542,344 - Ga0059261_1462 0.22 +0.1
1,542,344 - Ga0059261_1462 0.22 +0.1
1,542,344 - Ga0059261_1462 0.22 +0.2
1,542,344 - Ga0059261_1462 0.22 +0.3
1,542,344 - Ga0059261_1462 0.22 -1.5
1,542,344 - Ga0059261_1462 0.22 +0.3
1,542,344 - Ga0059261_1462 0.22 +0.1
1,542,344 - Ga0059261_1462 0.22 -0.6
1,542,344 - Ga0059261_1462 0.22 -0.1
1,542,344 - Ga0059261_1462 0.22 +0.0
1,542,344 - Ga0059261_1462 0.22 +0.4
1,542,344 - Ga0059261_1462 0.22 +0.7
1,542,344 - Ga0059261_1462 0.22 +0.2
1,542,344 - Ga0059261_1462 0.22 +0.5
1,542,344 - Ga0059261_1462 0.22 +0.0
1,542,344 - Ga0059261_1462 0.22 +0.2
1,542,344 - Ga0059261_1462 0.22 -0.1
1,542,344 - Ga0059261_1462 0.22 +0.3
1,542,344 - Ga0059261_1462 0.22 -0.0
1,542,349 + Ga0059261_1462 0.23 +0.3
1,542,349 + Ga0059261_1462 0.23 +0.5
1,542,349 + +0.5
1,542,350 - Ga0059261_1462 0.23 +1.1
1,542,350 - Ga0059261_1462 0.23 +1.4
1,542,350 - Ga0059261_1462 0.23 +0.7
1,542,553 + Ga0059261_1462 0.43 +0.6
1,542,553 + Ga0059261_1462 0.43 +0.4
1,542,553 + Ga0059261_1462 0.43 +0.5
1,542,553 + Ga0059261_1462 0.43 +0.1
1,542,553 + Ga0059261_1462 0.43 +0.2
1,542,553 + Ga0059261_1462 0.43 +0.2
1,542,553 + Ga0059261_1462 0.43 -0.1
1,542,553 + Ga0059261_1462 0.43 +0.0
1,542,554 - Ga0059261_1462 0.43 -0.0
1,542,554 - Ga0059261_1462 0.43 +0.1
1,542,554 - Ga0059261_1462 0.43 -3.5
1,542,554 - Ga0059261_1462 0.43 +0.6
1,542,787 + Ga0059261_1462 0.67 +1.9
1,542,787 + Ga0059261_1462 0.67 +0.5
1,542,787 + Ga0059261_1462 0.67 +0.3
1,542,787 + Ga0059261_1462 0.67 +0.5
1,542,788 - Ga0059261_1462 0.67 -0.0
1,542,788 - Ga0059261_1462 0.67 -0.4
1,542,789 + Ga0059261_1462 0.67 +0.0
1,542,789 + Ga0059261_1462 0.67 +1.5
1,542,789 + Ga0059261_1462 0.67 +1.4
1,542,789 + Ga0059261_1462 0.67 +0.4
1,542,789 + Ga0059261_1462 0.67 +0.6
1,542,789 + Ga0059261_1462 0.67 -0.1
1,542,789 + Ga0059261_1462 0.67 +0.5
1,542,789 + Ga0059261_1462 0.67 +0.3
1,542,789 + Ga0059261_1462 0.67 -0.1
1,542,789 + Ga0059261_1462 0.67 -0.3
1,542,789 + Ga0059261_1462 0.67 +0.5
1,542,789 + Ga0059261_1462 0.67 +0.8
1,542,789 + Ga0059261_1462 0.67 +0.0
1,542,790 - Ga0059261_1462 0.67 +0.3
1,542,790 - Ga0059261_1462 0.67 -0.1
1,542,790 - Ga0059261_1462 0.67 -0.5
1,542,790 - Ga0059261_1462 0.67 -0.3
1,542,790 - Ga0059261_1462 0.67 -0.1
1,542,790 - Ga0059261_1462 0.67 +1.1
1,542,790 - Ga0059261_1462 0.67 +0.7
1,542,790 - Ga0059261_1462 0.67 +2.2
1,542,790 - Ga0059261_1462 0.67 -0.7
1,542,790 - Ga0059261_1462 0.67 +0.4
1,542,790 - Ga0059261_1462 0.67 +0.2
1,542,790 - Ga0059261_1462 0.67 +0.4
1,542,790 - Ga0059261_1462 0.67 +0.0
1,543,081 + -0.1
1,543,081 + +0.8
1,543,081 + -0.1
1,543,081 + +0.1
1,543,082 - +1.0
1,543,082 - +0.7
1,543,120 + -0.1
1,543,121 - +0.4
1,543,121 - -0.1
1,543,887 + Ga0059261_1463 0.22 +0.4
1,543,887 + Ga0059261_1463 0.22 -0.1
1,543,887 + Ga0059261_1463 0.22 -0.9
1,543,887 + Ga0059261_1463 0.22 -0.0
1,543,887 + Ga0059261_1463 0.22 +0.1
1,543,888 - Ga0059261_1463 0.22 -0.7
1,543,888 - Ga0059261_1463 0.22 -0.7
1,543,888 - Ga0059261_1463 0.22 +0.1
1,543,888 - Ga0059261_1463 0.22 -0.5
1,543,888 - Ga0059261_1463 0.22 -0.1
1,543,888 - Ga0059261_1463 0.22 -0.2
1,543,898 + Ga0059261_1463 0.23 +0.5
1,543,899 - Ga0059261_1463 0.23 -0.4
1,543,899 - Ga0059261_1463 0.23 -0.9
1,543,899 - Ga0059261_1463 0.23 -0.7
1,543,899 - Ga0059261_1463 0.23 +0.4
1,544,043 + Ga0059261_1463 0.28 -0.5
1,544,043 + Ga0059261_1463 0.28 +0.1
1,544,043 + Ga0059261_1463 0.28 -0.2
1,544,043 + Ga0059261_1463 0.28 +0.5
1,544,043 + Ga0059261_1463 0.28 +0.5
1,544,044 - Ga0059261_1463 0.28 +0.2
1,544,044 - Ga0059261_1463 0.28 +1.0
1,544,044 - Ga0059261_1463 0.28 +0.1
1,544,044 - Ga0059261_1463 0.28 -0.1
1,544,044 - Ga0059261_1463 0.28 -0.2
1,544,044 - Ga0059261_1463 0.28 -0.2
1,544,044 - Ga0059261_1463 0.28 +0.6
1,544,045 + Ga0059261_1463 0.28 +0.4
1,544,046 - Ga0059261_1463 0.28 -0.3
1,544,046 - Ga0059261_1463 0.28 -0.8
1,544,067 + Ga0059261_1463 0.29 -1.1
1,544,068 - Ga0059261_1463 0.29 +0.4
1,544,091 + Ga0059261_1463 0.30 +0.2
1,544,091 + Ga0059261_1463 0.30 +0.4
1,544,091 + Ga0059261_1463 0.30 +0.3
1,544,091 + Ga0059261_1463 0.30 -0.2
1,544,092 - -1.3

Or see this region's nucleotide sequence