Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1414

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1412 and Ga0059261_1413 are separated by 64 nucleotidesGa0059261_1413 and Ga0059261_1414 overlap by 4 nucleotidesGa0059261_1414 and Ga0059261_1415 are separated by 154 nucleotides Ga0059261_1412: Ga0059261_1412 - DNA polymerase III, beta subunit, at 1,486,899 to 1,488,002 _1412 Ga0059261_1413: Ga0059261_1413 - Uncharacterized protein involved in ubiquinone biosynthesis, at 1,488,067 to 1,488,888 _1413 Ga0059261_1414: Ga0059261_1414 - Uncharacterized proteins, homologs of microcin C7 resistance protein MccF, at 1,488,885 to 1,489,700 _1414 Ga0059261_1415: Ga0059261_1415 - UDP-N-acetylmuramate-alanine ligase, at 1,489,855 to 1,491,264 _1415 Position (kb) 1488 1489 1490Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1488.014 kb on + strandat 1488.014 kb on + strandat 1488.014 kb on + strandat 1488.014 kb on + strandat 1488.014 kb on + strandat 1488.015 kb on - strandat 1488.015 kb on - strandat 1488.245 kb on + strand, within Ga0059261_1413at 1488.246 kb on - strand, within Ga0059261_1413at 1488.246 kb on - strand, within Ga0059261_1413at 1488.292 kb on + strand, within Ga0059261_1413at 1488.293 kb on - strand, within Ga0059261_1413at 1488.293 kb on - strandat 1488.293 kb on - strand, within Ga0059261_1413at 1488.334 kb on + strand, within Ga0059261_1413at 1488.334 kb on + strand, within Ga0059261_1413at 1488.335 kb on - strand, within Ga0059261_1413at 1488.335 kb on - strand, within Ga0059261_1413at 1488.335 kb on - strand, within Ga0059261_1413at 1488.472 kb on + strand, within Ga0059261_1413at 1488.473 kb on - strand, within Ga0059261_1413at 1488.473 kb on - strand, within Ga0059261_1413at 1488.571 kb on + strand, within Ga0059261_1413at 1488.572 kb on - strand, within Ga0059261_1413at 1488.619 kb on + strand, within Ga0059261_1413at 1488.619 kb on + strand, within Ga0059261_1413at 1488.620 kb on - strand, within Ga0059261_1413at 1488.620 kb on - strand, within Ga0059261_1413at 1488.769 kb on + strand, within Ga0059261_1413at 1488.769 kb on + strand, within Ga0059261_1413at 1488.769 kb on + strand, within Ga0059261_1413at 1488.769 kb on + strand, within Ga0059261_1413at 1488.769 kb on + strand, within Ga0059261_1413at 1488.770 kb on - strand, within Ga0059261_1413at 1488.770 kb on - strand, within Ga0059261_1413at 1488.770 kb on - strand, within Ga0059261_1413at 1488.770 kb on - strand, within Ga0059261_1413at 1488.770 kb on - strand, within Ga0059261_1413at 1488.784 kb on + strand, within Ga0059261_1413at 1488.785 kb on - strand, within Ga0059261_1413at 1488.838 kb on + strandat 1488.839 kb on - strandat 1488.839 kb on - strandat 1488.886 kb on + strandat 1488.886 kb on + strandat 1488.887 kb on - strandat 1488.949 kb on + strandat 1488.950 kb on - strandat 1488.950 kb on - strandat 1488.950 kb on - strandat 1488.950 kb on - strandat 1489.115 kb on - strand, within Ga0059261_1414at 1489.366 kb on + strand, within Ga0059261_1414at 1489.366 kb on + strand, within Ga0059261_1414at 1489.366 kb on + strandat 1489.406 kb on + strand, within Ga0059261_1414at 1489.408 kb on + strand, within Ga0059261_1414at 1489.408 kb on + strand, within Ga0059261_1414at 1489.408 kb on + strand, within Ga0059261_1414at 1489.408 kb on + strand, within Ga0059261_1414at 1489.408 kb on + strand, within Ga0059261_1414at 1489.409 kb on - strand, within Ga0059261_1414at 1489.409 kb on - strand, within Ga0059261_1414at 1489.409 kb on - strand, within Ga0059261_1414at 1489.409 kb on - strand, within Ga0059261_1414at 1489.409 kb on - strand, within Ga0059261_1414at 1489.409 kb on - strand, within Ga0059261_1414at 1489.409 kb on - strand, within Ga0059261_1414at 1489.409 kb on - strand, within Ga0059261_1414at 1489.409 kb on - strand, within Ga0059261_1414at 1489.409 kb on - strand, within Ga0059261_1414at 1489.409 kb on - strand, within Ga0059261_1414at 1489.409 kb on - strand, within Ga0059261_1414at 1489.409 kb on - strand, within Ga0059261_1414at 1489.618 kb on + strand, within Ga0059261_1414at 1489.618 kb on + strand, within Ga0059261_1414at 1489.619 kb on - strandat 1489.764 kb on + strandat 1489.764 kb on + strandat 1489.765 kb on - strandat 1489.765 kb on - strandat 1489.769 kb on + strandat 1489.769 kb on + strandat 1489.769 kb on + strandat 1489.769 kb on + strandat 1489.769 kb on + strandat 1489.769 kb on + strandat 1489.769 kb on + strandat 1489.769 kb on + strandat 1489.769 kb on + strandat 1489.769 kb on + strandat 1489.770 kb on - strandat 1489.770 kb on - strandat 1489.770 kb on - strandat 1489.770 kb on - strandat 1489.770 kb on - strandat 1489.770 kb on - strandat 1489.770 kb on - strandat 1489.770 kb on - strandat 1490.357 kb on - strand, within Ga0059261_1415at 1490.398 kb on + strand, within Ga0059261_1415at 1490.398 kb on + strand, within Ga0059261_1415at 1490.399 kb on - strand, within Ga0059261_1415at 1490.399 kb on - strand, within Ga0059261_1415

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,488,014 + +0.1
1,488,014 + -0.1
1,488,014 + -0.3
1,488,014 + +0.9
1,488,014 + +0.4
1,488,015 - +0.2
1,488,015 - +0.3
1,488,245 + Ga0059261_1413 0.22 -0.3
1,488,246 - Ga0059261_1413 0.22 +0.2
1,488,246 - Ga0059261_1413 0.22 +0.4
1,488,292 + Ga0059261_1413 0.27 +0.6
1,488,293 - Ga0059261_1413 0.27 +0.7
1,488,293 - +1.1
1,488,293 - Ga0059261_1413 0.27 +0.4
1,488,334 + Ga0059261_1413 0.32 +0.0
1,488,334 + Ga0059261_1413 0.32 +0.0
1,488,335 - Ga0059261_1413 0.33 -0.1
1,488,335 - Ga0059261_1413 0.33 +0.5
1,488,335 - Ga0059261_1413 0.33 +0.4
1,488,472 + Ga0059261_1413 0.49 +0.5
1,488,473 - Ga0059261_1413 0.49 -0.0
1,488,473 - Ga0059261_1413 0.49 -0.1
1,488,571 + Ga0059261_1413 0.61 +0.6
1,488,572 - Ga0059261_1413 0.61 -4.1
1,488,619 + Ga0059261_1413 0.67 -0.1
1,488,619 + Ga0059261_1413 0.67 +0.7
1,488,620 - Ga0059261_1413 0.67 +1.3
1,488,620 - Ga0059261_1413 0.67 +0.0
1,488,769 + Ga0059261_1413 0.85 +0.0
1,488,769 + Ga0059261_1413 0.85 +0.3
1,488,769 + Ga0059261_1413 0.85 -0.6
1,488,769 + Ga0059261_1413 0.85 -0.5
1,488,769 + Ga0059261_1413 0.85 -0.9
1,488,770 - Ga0059261_1413 0.86 -0.2
1,488,770 - Ga0059261_1413 0.86 -0.9
1,488,770 - Ga0059261_1413 0.86 +0.5
1,488,770 - Ga0059261_1413 0.86 +0.2
1,488,770 - Ga0059261_1413 0.86 -0.5
1,488,784 + Ga0059261_1413 0.87 +0.8
1,488,785 - Ga0059261_1413 0.87 -0.3
1,488,838 + -0.2
1,488,839 - +0.2
1,488,839 - -0.4
1,488,886 + -0.1
1,488,886 + -0.1
1,488,887 - -1.1
1,488,949 + +0.5
1,488,950 - +2.1
1,488,950 - +0.6
1,488,950 - +0.4
1,488,950 - +0.7
1,489,115 - Ga0059261_1414 0.28 -0.8
1,489,366 + Ga0059261_1414 0.59 +1.6
1,489,366 + Ga0059261_1414 0.59 +1.0
1,489,366 + +0.5
1,489,406 + Ga0059261_1414 0.64 +0.2
1,489,408 + Ga0059261_1414 0.64 +0.1
1,489,408 + Ga0059261_1414 0.64 +0.5
1,489,408 + Ga0059261_1414 0.64 -0.1
1,489,408 + Ga0059261_1414 0.64 +0.9
1,489,408 + Ga0059261_1414 0.64 +1.5
1,489,409 - Ga0059261_1414 0.64 +2.3
1,489,409 - Ga0059261_1414 0.64 +0.1
1,489,409 - Ga0059261_1414 0.64 +0.8
1,489,409 - Ga0059261_1414 0.64 +1.2
1,489,409 - Ga0059261_1414 0.64 +0.6
1,489,409 - Ga0059261_1414 0.64 -1.8
1,489,409 - Ga0059261_1414 0.64 +0.3
1,489,409 - Ga0059261_1414 0.64 +0.6
1,489,409 - Ga0059261_1414 0.64 +1.0
1,489,409 - Ga0059261_1414 0.64 +0.4
1,489,409 - Ga0059261_1414 0.64 +1.6
1,489,409 - Ga0059261_1414 0.64 +0.3
1,489,409 - Ga0059261_1414 0.64 +0.2
1,489,618 + Ga0059261_1414 0.90 +0.2
1,489,618 + Ga0059261_1414 0.90 +0.2
1,489,619 - +0.2
1,489,764 + +0.0
1,489,764 + -0.1
1,489,765 - -0.2
1,489,765 - +0.3
1,489,769 + -0.1
1,489,769 + +0.2
1,489,769 + +0.3
1,489,769 + -0.5
1,489,769 + -0.2
1,489,769 + +0.1
1,489,769 + -0.2
1,489,769 + +0.4
1,489,769 + -0.5
1,489,769 + +1.1
1,489,770 - +2.9
1,489,770 - -0.6
1,489,770 - -0.3
1,489,770 - -0.3
1,489,770 - -0.3
1,489,770 - -0.0
1,489,770 - +0.3
1,489,770 - -0.8
1,490,357 - Ga0059261_1415 0.36 -0.3
1,490,398 + Ga0059261_1415 0.39 +0.1
1,490,398 + Ga0059261_1415 0.39 +0.4
1,490,399 - Ga0059261_1415 0.39 -1.6
1,490,399 - Ga0059261_1415 0.39 -0.6

Or see this region's nucleotide sequence