Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1214

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1212 and Ga0059261_1213 are separated by 66 nucleotidesGa0059261_1213 and Ga0059261_1214 are separated by 368 nucleotidesGa0059261_1214 and Ga0059261_1215 are separated by 129 nucleotides Ga0059261_1212: Ga0059261_1212 - Outer membrane protein, at 1,267,435 to 1,268,673 _1212 Ga0059261_1213: Ga0059261_1213 - hypothetical protein, at 1,268,740 to 1,269,123 _1213 Ga0059261_1214: Ga0059261_1214 - hypothetical protein, at 1,269,492 to 1,269,989 _1214 Ga0059261_1215: Ga0059261_1215 - Transposase DDE domain group 1, at 1,270,119 to 1,271,489 _1215 Position (kb) 1269 1270Strain fitness (log2 ratio) -1 0 1at 1268.669 kb on + strandat 1268.669 kb on + strandat 1268.669 kb on + strandat 1268.670 kb on - strandat 1268.670 kb on - strandat 1268.670 kb on - strandat 1268.670 kb on - strandat 1268.670 kb on - strandat 1268.670 kb on - strandat 1268.670 kb on - strandat 1268.840 kb on - strand, within Ga0059261_1213at 1269.015 kb on + strand, within Ga0059261_1213at 1269.015 kb on + strand, within Ga0059261_1213at 1269.016 kb on - strand, within Ga0059261_1213at 1269.135 kb on + strandat 1269.136 kb on - strandat 1269.148 kb on - strandat 1269.148 kb on - strandat 1269.151 kb on + strandat 1269.152 kb on - strandat 1269.152 kb on - strandat 1269.152 kb on - strandat 1269.165 kb on + strandat 1269.165 kb on + strandat 1269.169 kb on + strandat 1269.169 kb on + strandat 1269.170 kb on - strandat 1269.178 kb on + strandat 1269.194 kb on + strandat 1269.195 kb on - strandat 1269.195 kb on - strandat 1269.241 kb on - strandat 1269.285 kb on - strandat 1269.285 kb on - strandat 1269.285 kb on - strandat 1269.285 kb on - strandat 1269.285 kb on - strandat 1269.293 kb on - strandat 1269.293 kb on - strandat 1269.928 kb on + strand, within Ga0059261_1214

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,268,669 + +0.5
1,268,669 + -0.5
1,268,669 + -0.0
1,268,670 - +0.5
1,268,670 - -0.3
1,268,670 - +0.5
1,268,670 - +0.0
1,268,670 - -0.6
1,268,670 - +0.7
1,268,670 - -0.4
1,268,840 - Ga0059261_1213 0.26 -0.3
1,269,015 + Ga0059261_1213 0.72 -0.3
1,269,015 + Ga0059261_1213 0.72 -0.9
1,269,016 - Ga0059261_1213 0.72 -0.3
1,269,135 + +0.5
1,269,136 - +0.2
1,269,148 - -0.0
1,269,148 - -0.5
1,269,151 + -0.5
1,269,152 - +0.7
1,269,152 - -0.1
1,269,152 - +0.5
1,269,165 + +0.9
1,269,165 + +0.2
1,269,169 + -0.4
1,269,169 + +0.8
1,269,170 - -0.0
1,269,178 + +0.3
1,269,194 + +0.2
1,269,195 - +0.0
1,269,195 - +0.3
1,269,241 - -0.2
1,269,285 - +0.2
1,269,285 - +0.0
1,269,285 - +0.9
1,269,285 - +0.1
1,269,285 - -0.3
1,269,293 - -0.5
1,269,293 - +0.7
1,269,928 + Ga0059261_1214 0.88 +0.3

Or see this region's nucleotide sequence