Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1032

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1031 and Ga0059261_1032 are separated by 198 nucleotidesGa0059261_1032 and Ga0059261_1033 overlap by 4 nucleotides Ga0059261_1031: Ga0059261_1031 - hypothetical protein, at 1,069,399 to 1,070,133 _1031 Ga0059261_1032: Ga0059261_1032 - protein CrcB, at 1,070,332 to 1,070,709 _1032 Ga0059261_1033: Ga0059261_1033 - pseudouridine synthase, RluA family, at 1,070,706 to 1,071,851 _1033 Position (kb) 1070 1071Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1069.337 kb on + strandat 1069.354 kb on + strandat 1069.491 kb on + strand, within Ga0059261_1031at 1069.615 kb on + strand, within Ga0059261_1031at 1069.616 kb on - strand, within Ga0059261_1031at 1069.616 kb on - strand, within Ga0059261_1031at 1069.616 kb on - strand, within Ga0059261_1031at 1069.616 kb on - strand, within Ga0059261_1031at 1069.810 kb on + strand, within Ga0059261_1031at 1069.810 kb on + strandat 1069.919 kb on + strand, within Ga0059261_1031at 1069.919 kb on + strand, within Ga0059261_1031at 1069.919 kb on + strand, within Ga0059261_1031at 1069.920 kb on - strand, within Ga0059261_1031at 1069.963 kb on + strand, within Ga0059261_1031at 1069.963 kb on + strand, within Ga0059261_1031at 1069.963 kb on + strand, within Ga0059261_1031at 1069.963 kb on + strand, within Ga0059261_1031at 1069.964 kb on - strand, within Ga0059261_1031at 1069.964 kb on - strand, within Ga0059261_1031at 1069.964 kb on - strand, within Ga0059261_1031at 1069.964 kb on - strand, within Ga0059261_1031at 1069.964 kb on - strand, within Ga0059261_1031at 1069.966 kb on + strand, within Ga0059261_1031at 1069.966 kb on + strand, within Ga0059261_1031at 1069.966 kb on + strand, within Ga0059261_1031at 1069.966 kb on + strand, within Ga0059261_1031at 1069.967 kb on - strand, within Ga0059261_1031at 1069.967 kb on - strand, within Ga0059261_1031at 1069.967 kb on - strand, within Ga0059261_1031at 1069.967 kb on - strand, within Ga0059261_1031at 1069.967 kb on - strand, within Ga0059261_1031at 1069.968 kb on + strand, within Ga0059261_1031at 1069.968 kb on + strand, within Ga0059261_1031at 1069.968 kb on + strand, within Ga0059261_1031at 1069.968 kb on + strand, within Ga0059261_1031at 1069.968 kb on + strand, within Ga0059261_1031at 1069.968 kb on + strand, within Ga0059261_1031at 1069.968 kb on + strand, within Ga0059261_1031at 1069.968 kb on + strand, within Ga0059261_1031at 1069.968 kb on + strand, within Ga0059261_1031at 1069.968 kb on + strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1069.969 kb on - strand, within Ga0059261_1031at 1070.062 kb on + strandat 1070.062 kb on + strandat 1070.062 kb on + strandat 1070.062 kb on + strandat 1070.063 kb on - strandat 1070.063 kb on - strandat 1070.063 kb on - strandat 1070.127 kb on + strandat 1070.127 kb on + strandat 1070.127 kb on + strandat 1070.128 kb on - strandat 1070.131 kb on + strandat 1070.131 kb on + strandat 1070.132 kb on - strandat 1070.132 kb on - strandat 1070.132 kb on - strandat 1070.132 kb on - strandat 1070.132 kb on - strandat 1070.204 kb on + strandat 1070.320 kb on + strandat 1070.320 kb on + strandat 1070.635 kb on + strand, within Ga0059261_1032at 1070.635 kb on + strand, within Ga0059261_1032at 1070.635 kb on + strand, within Ga0059261_1032at 1070.635 kb on + strand, within Ga0059261_1032at 1070.635 kb on + strand, within Ga0059261_1032at 1070.635 kb on + strand, within Ga0059261_1032at 1070.635 kb on + strand, within Ga0059261_1032

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,069,337 + +0.1
1,069,354 + +0.7
1,069,491 + Ga0059261_1031 0.13 +0.7
1,069,615 + Ga0059261_1031 0.29 -1.0
1,069,616 - Ga0059261_1031 0.30 -0.1
1,069,616 - Ga0059261_1031 0.30 -0.1
1,069,616 - Ga0059261_1031 0.30 +0.3
1,069,616 - Ga0059261_1031 0.30 +0.7
1,069,810 + Ga0059261_1031 0.56 -0.6
1,069,810 + +3.0
1,069,919 + Ga0059261_1031 0.71 +0.4
1,069,919 + Ga0059261_1031 0.71 -0.1
1,069,919 + Ga0059261_1031 0.71 +0.0
1,069,920 - Ga0059261_1031 0.71 -0.3
1,069,963 + Ga0059261_1031 0.77 -0.5
1,069,963 + Ga0059261_1031 0.77 +0.1
1,069,963 + Ga0059261_1031 0.77 -0.2
1,069,963 + Ga0059261_1031 0.77 +0.8
1,069,964 - Ga0059261_1031 0.77 +0.8
1,069,964 - Ga0059261_1031 0.77 -0.2
1,069,964 - Ga0059261_1031 0.77 +0.3
1,069,964 - Ga0059261_1031 0.77 -1.1
1,069,964 - Ga0059261_1031 0.77 -0.2
1,069,966 + Ga0059261_1031 0.77 +0.8
1,069,966 + Ga0059261_1031 0.77 +0.4
1,069,966 + Ga0059261_1031 0.77 -0.3
1,069,966 + Ga0059261_1031 0.77 -0.3
1,069,967 - Ga0059261_1031 0.77 +0.9
1,069,967 - Ga0059261_1031 0.77 +0.6
1,069,967 - Ga0059261_1031 0.77 +0.1
1,069,967 - Ga0059261_1031 0.77 -0.2
1,069,967 - Ga0059261_1031 0.77 +0.4
1,069,968 + Ga0059261_1031 0.77 +0.3
1,069,968 + Ga0059261_1031 0.77 -0.1
1,069,968 + Ga0059261_1031 0.77 +0.2
1,069,968 + Ga0059261_1031 0.77 +0.6
1,069,968 + Ga0059261_1031 0.77 +0.1
1,069,968 + Ga0059261_1031 0.77 -0.1
1,069,968 + Ga0059261_1031 0.77 +0.1
1,069,968 + Ga0059261_1031 0.77 +0.0
1,069,968 + Ga0059261_1031 0.77 -0.1
1,069,968 + Ga0059261_1031 0.77 -0.4
1,069,969 - Ga0059261_1031 0.78 +0.0
1,069,969 - Ga0059261_1031 0.78 -0.7
1,069,969 - Ga0059261_1031 0.78 +0.3
1,069,969 - Ga0059261_1031 0.78 -0.0
1,069,969 - Ga0059261_1031 0.78 +1.3
1,069,969 - Ga0059261_1031 0.78 -2.2
1,069,969 - Ga0059261_1031 0.78 +0.1
1,069,969 - Ga0059261_1031 0.78 +0.4
1,069,969 - Ga0059261_1031 0.78 +0.8
1,069,969 - Ga0059261_1031 0.78 -0.1
1,069,969 - Ga0059261_1031 0.78 -0.3
1,069,969 - Ga0059261_1031 0.78 +0.6
1,069,969 - Ga0059261_1031 0.78 -0.4
1,069,969 - Ga0059261_1031 0.78 +0.8
1,069,969 - Ga0059261_1031 0.78 +0.4
1,070,062 + +0.1
1,070,062 + -0.2
1,070,062 + +0.4
1,070,062 + +0.3
1,070,063 - -0.5
1,070,063 - -0.3
1,070,063 - +0.8
1,070,127 + +0.1
1,070,127 + +0.4
1,070,127 + -0.0
1,070,128 - +0.6
1,070,131 + -0.4
1,070,131 + -1.0
1,070,132 - -0.5
1,070,132 - +0.2
1,070,132 - -0.8
1,070,132 - -0.3
1,070,132 - -0.0
1,070,204 + -0.4
1,070,320 + +1.0
1,070,320 + -0.2
1,070,635 + Ga0059261_1032 0.80 +0.3
1,070,635 + Ga0059261_1032 0.80 -0.4
1,070,635 + Ga0059261_1032 0.80 +0.4
1,070,635 + Ga0059261_1032 0.80 +0.7
1,070,635 + Ga0059261_1032 0.80 +0.1
1,070,635 + Ga0059261_1032 0.80 +0.2
1,070,635 + Ga0059261_1032 0.80 -0.7

Or see this region's nucleotide sequence