Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1015

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1014 and Ga0059261_1015 overlap by 8 nucleotidesGa0059261_1015 and Ga0059261_1016 overlap by 21 nucleotidesGa0059261_1016 and Ga0059261_1017 are separated by 45 nucleotides Ga0059261_1014: Ga0059261_1014 - cation diffusion facilitator family transporter, at 1,051,539 to 1,052,528 _1014 Ga0059261_1015: Ga0059261_1015 - Predicted phosphatases, at 1,052,521 to 1,053,180 _1015 Ga0059261_1016: Ga0059261_1016 - Cupin domain, at 1,053,160 to 1,053,483 _1016 Ga0059261_1017: Ga0059261_1017 - tRNA-guanine transglycosylase, at 1,053,529 to 1,054,656 _1017 Position (kb) 1052 1053 1054Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1051.526 kb on + strandat 1051.527 kb on - strandat 1051.794 kb on + strand, within Ga0059261_1014at 1051.794 kb on + strand, within Ga0059261_1014at 1051.795 kb on - strand, within Ga0059261_1014at 1052.000 kb on + strand, within Ga0059261_1014at 1052.019 kb on + strand, within Ga0059261_1014at 1052.019 kb on + strand, within Ga0059261_1014at 1052.019 kb on + strand, within Ga0059261_1014at 1052.020 kb on - strand, within Ga0059261_1014at 1052.020 kb on - strand, within Ga0059261_1014at 1052.048 kb on - strand, within Ga0059261_1014at 1052.356 kb on + strand, within Ga0059261_1014at 1052.356 kb on + strand, within Ga0059261_1014at 1052.356 kb on + strand, within Ga0059261_1014at 1052.356 kb on + strand, within Ga0059261_1014at 1052.356 kb on + strand, within Ga0059261_1014at 1052.357 kb on - strand, within Ga0059261_1014at 1052.357 kb on - strand, within Ga0059261_1014at 1052.630 kb on - strand, within Ga0059261_1015at 1052.743 kb on + strand, within Ga0059261_1015at 1052.743 kb on + strand, within Ga0059261_1015at 1052.743 kb on + strand, within Ga0059261_1015at 1052.743 kb on + strand, within Ga0059261_1015at 1052.744 kb on - strand, within Ga0059261_1015at 1052.744 kb on - strand, within Ga0059261_1015at 1052.744 kb on - strand, within Ga0059261_1015at 1053.027 kb on + strand, within Ga0059261_1015at 1053.029 kb on + strand, within Ga0059261_1015at 1053.072 kb on - strand, within Ga0059261_1015at 1053.079 kb on + strand, within Ga0059261_1015at 1053.079 kb on + strandat 1053.080 kb on - strand, within Ga0059261_1015at 1053.421 kb on + strand, within Ga0059261_1016at 1053.421 kb on + strand, within Ga0059261_1016at 1053.422 kb on - strand, within Ga0059261_1016at 1053.422 kb on - strand, within Ga0059261_1016at 1053.558 kb on + strandat 1053.558 kb on + strandat 1053.650 kb on + strand, within Ga0059261_1017at 1053.650 kb on + strand, within Ga0059261_1017at 1053.651 kb on - strand, within Ga0059261_1017at 1053.712 kb on + strand, within Ga0059261_1017at 1053.712 kb on + strand, within Ga0059261_1017at 1053.713 kb on - strand, within Ga0059261_1017at 1053.713 kb on - strand, within Ga0059261_1017at 1053.713 kb on - strand, within Ga0059261_1017at 1053.713 kb on - strand, within Ga0059261_1017at 1053.713 kb on - strand, within Ga0059261_1017at 1053.713 kb on - strand, within Ga0059261_1017at 1053.713 kb on - strand, within Ga0059261_1017at 1053.814 kb on + strand, within Ga0059261_1017at 1053.815 kb on - strand, within Ga0059261_1017at 1054.174 kb on + strand, within Ga0059261_1017at 1054.174 kb on + strandat 1054.174 kb on + strand, within Ga0059261_1017

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,051,526 + +0.3
1,051,527 - -0.3
1,051,794 + Ga0059261_1014 0.26 -0.3
1,051,794 + Ga0059261_1014 0.26 -0.9
1,051,795 - Ga0059261_1014 0.26 -1.3
1,052,000 + Ga0059261_1014 0.47 -0.7
1,052,019 + Ga0059261_1014 0.48 -0.5
1,052,019 + Ga0059261_1014 0.48 -0.2
1,052,019 + Ga0059261_1014 0.48 -0.9
1,052,020 - Ga0059261_1014 0.49 +0.4
1,052,020 - Ga0059261_1014 0.49 -0.3
1,052,048 - Ga0059261_1014 0.51 -2.8
1,052,356 + Ga0059261_1014 0.83 -0.4
1,052,356 + Ga0059261_1014 0.83 -0.1
1,052,356 + Ga0059261_1014 0.83 +0.2
1,052,356 + Ga0059261_1014 0.83 -1.7
1,052,356 + Ga0059261_1014 0.83 -0.4
1,052,357 - Ga0059261_1014 0.83 -0.6
1,052,357 - Ga0059261_1014 0.83 +0.1
1,052,630 - Ga0059261_1015 0.17 -1.2
1,052,743 + Ga0059261_1015 0.34 -5.3
1,052,743 + Ga0059261_1015 0.34 +0.2
1,052,743 + Ga0059261_1015 0.34 -0.7
1,052,743 + Ga0059261_1015 0.34 -0.5
1,052,744 - Ga0059261_1015 0.34 +0.0
1,052,744 - Ga0059261_1015 0.34 -1.4
1,052,744 - Ga0059261_1015 0.34 -0.4
1,053,027 + Ga0059261_1015 0.77 -0.6
1,053,029 + Ga0059261_1015 0.77 -0.6
1,053,072 - Ga0059261_1015 0.83 -0.8
1,053,079 + Ga0059261_1015 0.85 -0.2
1,053,079 + -0.4
1,053,080 - Ga0059261_1015 0.85 -1.0
1,053,421 + Ga0059261_1016 0.81 +0.2
1,053,421 + Ga0059261_1016 0.81 -0.2
1,053,422 - Ga0059261_1016 0.81 +1.3
1,053,422 - Ga0059261_1016 0.81 +0.0
1,053,558 + -1.0
1,053,558 + -1.1
1,053,650 + Ga0059261_1017 0.11 +0.2
1,053,650 + Ga0059261_1017 0.11 -0.5
1,053,651 - Ga0059261_1017 0.11 -0.9
1,053,712 + Ga0059261_1017 0.16 -1.4
1,053,712 + Ga0059261_1017 0.16 -1.9
1,053,713 - Ga0059261_1017 0.16 -0.4
1,053,713 - Ga0059261_1017 0.16 -0.6
1,053,713 - Ga0059261_1017 0.16 +0.9
1,053,713 - Ga0059261_1017 0.16 -0.3
1,053,713 - Ga0059261_1017 0.16 +0.1
1,053,713 - Ga0059261_1017 0.16 +0.1
1,053,713 - Ga0059261_1017 0.16 +0.9
1,053,814 + Ga0059261_1017 0.25 -1.2
1,053,815 - Ga0059261_1017 0.25 +0.4
1,054,174 + Ga0059261_1017 0.57 -0.6
1,054,174 + +0.1
1,054,174 + Ga0059261_1017 0.57 -1.3

Or see this region's nucleotide sequence