Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0950

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0949 and Ga0059261_0950 overlap by 4 nucleotidesGa0059261_0950 and Ga0059261_0951 are separated by 36 nucleotides Ga0059261_0949: Ga0059261_0949 - His Kinase A (phospho-acceptor) domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, at 979,180 to 980,556 _0949 Ga0059261_0950: Ga0059261_0950 - Uncharacterized protein conserved in bacteria (DUF2336), at 980,553 to 981,644 _0950 Ga0059261_0951: Ga0059261_0951 - hypothetical protein, at 981,681 to 982,850 _0951 Position (kb) 980 981 982Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 979.743 kb on - strand, within Ga0059261_0949at 979.743 kb on - strand, within Ga0059261_0949at 981.076 kb on - strand, within Ga0059261_0950at 981.085 kb on + strand, within Ga0059261_0950at 981.086 kb on - strand, within Ga0059261_0950at 981.086 kb on - strand, within Ga0059261_0950at 981.086 kb on - strand, within Ga0059261_0950at 981.111 kb on - strand, within Ga0059261_0950at 981.375 kb on - strand, within Ga0059261_0950at 981.617 kb on + strandat 981.617 kb on + strandat 981.617 kb on + strandat 981.617 kb on + strandat 981.618 kb on - strandat 981.618 kb on - strandat 981.618 kb on - strandat 981.618 kb on - strandat 981.618 kb on - strandat 981.618 kb on - strandat 981.682 kb on + strandat 981.682 kb on + strandat 981.682 kb on + strandat 981.682 kb on + strandat 981.683 kb on - strandat 981.683 kb on - strandat 981.683 kb on - strandat 981.683 kb on - strandat 981.734 kb on - strandat 981.734 kb on - strandat 981.802 kb on + strand, within Ga0059261_0951at 981.802 kb on + strandat 981.803 kb on - strand, within Ga0059261_0951at 981.803 kb on - strand, within Ga0059261_0951at 981.803 kb on - strand, within Ga0059261_0951at 981.803 kb on - strand, within Ga0059261_0951at 982.329 kb on + strand, within Ga0059261_0951at 982.329 kb on + strandat 982.330 kb on - strand, within Ga0059261_0951at 982.330 kb on - strand, within Ga0059261_0951at 982.384 kb on + strand, within Ga0059261_0951at 982.384 kb on + strand, within Ga0059261_0951at 982.384 kb on + strand, within Ga0059261_0951at 982.384 kb on + strand, within Ga0059261_0951at 982.384 kb on + strand, within Ga0059261_0951at 982.384 kb on + strand, within Ga0059261_0951at 982.384 kb on + strand, within Ga0059261_0951at 982.385 kb on - strand, within Ga0059261_0951at 982.385 kb on - strand, within Ga0059261_0951

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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979,743 - Ga0059261_0949 0.41 +1.4
979,743 - Ga0059261_0949 0.41 +1.0
981,076 - Ga0059261_0950 0.48 +0.8
981,085 + Ga0059261_0950 0.49 +1.4
981,086 - Ga0059261_0950 0.49 +0.9
981,086 - Ga0059261_0950 0.49 +1.9
981,086 - Ga0059261_0950 0.49 +0.3
981,111 - Ga0059261_0950 0.51 +1.3
981,375 - Ga0059261_0950 0.75 -0.3
981,617 + +1.4
981,617 + +1.3
981,617 + +0.8
981,617 + +1.6
981,618 - +1.4
981,618 - -0.1
981,618 - +0.3
981,618 - +0.5
981,618 - +0.1
981,618 - +0.8
981,682 + -0.1
981,682 + +0.6
981,682 + +0.1
981,682 + +0.0
981,683 - -0.3
981,683 - -0.5
981,683 - +1.3
981,683 - -1.3
981,734 - +0.2
981,734 - -2.9
981,802 + Ga0059261_0951 0.10 +2.0
981,802 + +1.2
981,803 - Ga0059261_0951 0.10 +0.2
981,803 - Ga0059261_0951 0.10 +0.9
981,803 - Ga0059261_0951 0.10 +0.1
981,803 - Ga0059261_0951 0.10 +1.4
982,329 + Ga0059261_0951 0.55 +0.1
982,329 + +0.4
982,330 - Ga0059261_0951 0.55 +0.7
982,330 - Ga0059261_0951 0.55 +1.0
982,384 + Ga0059261_0951 0.60 +0.7
982,384 + Ga0059261_0951 0.60 +0.2
982,384 + Ga0059261_0951 0.60 -0.0
982,384 + Ga0059261_0951 0.60 +1.2
982,384 + Ga0059261_0951 0.60 +1.0
982,384 + Ga0059261_0951 0.60 +0.7
982,384 + Ga0059261_0951 0.60 -0.1
982,385 - Ga0059261_0951 0.60 -0.2
982,385 - Ga0059261_0951 0.60 +0.5

Or see this region's nucleotide sequence