Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0915 and Ga0059261_0916 are separated by 13 nucleotides Ga0059261_0916 and Ga0059261_0917 are separated by 10 nucleotides Ga0059261_0917 and Ga0059261_0918 are separated by 22 nucleotides Ga0059261_0918 and Ga0059261_0919 overlap by 4 nucleotides Ga0059261_0919 and Ga0059261_0920 overlap by 1 nucleotides
Ga0059261_0915: Ga0059261_0915 - Signal transduction histidine kinase, at 948,808 to 950,406
_0915
Ga0059261_0916: Ga0059261_0916 - HPr Serine kinase C-terminal domain, at 950,420 to 950,860
_0916
Ga0059261_0917: Ga0059261_0917 - Predicted P-loop-containing kinase, at 950,871 to 951,791
_0917
Ga0059261_0918: Ga0059261_0918 - Phosphotransferase system, mannose/fructose-specific component IIA, at 951,814 to 952,221
_0918
Ga0059261_0919: Ga0059261_0919 - Phosphotransferase System HPr (HPr) Family, at 952,218 to 952,490
_0919
Ga0059261_0920: Ga0059261_0920 - rRNA methylases, at 952,490 to 953,293
_0920
Position (kb) 950
951
952 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 950.405 kb on - strand at 951.066 kb on - strand, within Ga0059261_0917 at 951.141 kb on + strand, within Ga0059261_0917 at 951.159 kb on + strand, within Ga0059261_0917 at 951.159 kb on + strand, within Ga0059261_0917 at 951.160 kb on - strand, within Ga0059261_0917 at 951.160 kb on - strand, within Ga0059261_0917 at 951.195 kb on + strand, within Ga0059261_0917 at 951.195 kb on + strand, within Ga0059261_0917 at 951.195 kb on + strand, within Ga0059261_0917 at 951.196 kb on - strand, within Ga0059261_0917 at 951.196 kb on - strand, within Ga0059261_0917 at 951.196 kb on - strand, within Ga0059261_0917 at 951.197 kb on + strand, within Ga0059261_0917 at 951.197 kb on + strand, within Ga0059261_0917 at 951.197 kb on + strand, within Ga0059261_0917 at 951.197 kb on + strand, within Ga0059261_0917 at 951.198 kb on - strand, within Ga0059261_0917 at 951.198 kb on - strand, within Ga0059261_0917 at 951.528 kb on + strand, within Ga0059261_0917 at 951.529 kb on - strand, within Ga0059261_0917 at 951.529 kb on - strand, within Ga0059261_0917 at 951.529 kb on - strand, within Ga0059261_0917 at 951.529 kb on - strand, within Ga0059261_0917 at 951.529 kb on - strand, within Ga0059261_0917 at 951.529 kb on - strand, within Ga0059261_0917 at 951.549 kb on + strand, within Ga0059261_0917 at 951.549 kb on + strand, within Ga0059261_0917 at 951.550 kb on - strand, within Ga0059261_0917 at 951.624 kb on + strand, within Ga0059261_0917 at 951.624 kb on + strand, within Ga0059261_0917 at 951.624 kb on + strand, within Ga0059261_0917 at 951.625 kb on - strand, within Ga0059261_0917 at 951.629 kb on + strand, within Ga0059261_0917 at 951.629 kb on + strand, within Ga0059261_0917 at 951.629 kb on + strand, within Ga0059261_0917 at 951.629 kb on + strand, within Ga0059261_0917 at 951.629 kb on + strand, within Ga0059261_0917 at 951.630 kb on - strand, within Ga0059261_0917 at 951.630 kb on - strand, within Ga0059261_0917 at 951.630 kb on - strand, within Ga0059261_0917 at 951.630 kb on - strand, within Ga0059261_0917 at 951.630 kb on - strand, within Ga0059261_0917 at 951.630 kb on - strand, within Ga0059261_0917 at 951.766 kb on + strand at 951.766 kb on + strand at 951.766 kb on + strand at 951.828 kb on - strand at 951.907 kb on - strand, within Ga0059261_0918 at 951.907 kb on - strand, within Ga0059261_0918 at 951.907 kb on - strand, within Ga0059261_0918 at 951.933 kb on + strand, within Ga0059261_0918 at 951.934 kb on - strand, within Ga0059261_0918 at 951.934 kb on - strand, within Ga0059261_0918 at 952.177 kb on + strand, within Ga0059261_0918 at 952.177 kb on + strand, within Ga0059261_0918 at 952.177 kb on + strand, within Ga0059261_0918 at 952.177 kb on + strand, within Ga0059261_0918 at 952.177 kb on + strand, within Ga0059261_0918 at 952.177 kb on + strand at 952.178 kb on - strand, within Ga0059261_0918 at 952.178 kb on - strand, within Ga0059261_0918 at 952.178 kb on - strand, within Ga0059261_0918 at 952.178 kb on - strand, within Ga0059261_0918 at 952.178 kb on - strand, within Ga0059261_0918 at 952.178 kb on - strand, within Ga0059261_0918 at 952.178 kb on - strand, within Ga0059261_0918 at 952.637 kb on + strand, within Ga0059261_0920 at 952.637 kb on + strand, within Ga0059261_0920 at 952.638 kb on - strand, within Ga0059261_0920 at 952.638 kb on - strand, within Ga0059261_0920 at 952.638 kb on - strand, within Ga0059261_0920 at 952.638 kb on - strand, within Ga0059261_0920 at 952.791 kb on - strand, within Ga0059261_0920
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 950,405 - +2.1 951,066 - Ga0059261_0917 0.21 +1.1 951,141 + Ga0059261_0917 0.29 +0.3 951,159 + Ga0059261_0917 0.31 +2.9 951,159 + Ga0059261_0917 0.31 +0.7 951,160 - Ga0059261_0917 0.31 +1.1 951,160 - Ga0059261_0917 0.31 -0.2 951,195 + Ga0059261_0917 0.35 +1.4 951,195 + Ga0059261_0917 0.35 +1.8 951,195 + Ga0059261_0917 0.35 +1.8 951,196 - Ga0059261_0917 0.35 +0.3 951,196 - Ga0059261_0917 0.35 +1.4 951,196 - Ga0059261_0917 0.35 +0.8 951,197 + Ga0059261_0917 0.35 +1.2 951,197 + Ga0059261_0917 0.35 +1.2 951,197 + Ga0059261_0917 0.35 +0.8 951,197 + Ga0059261_0917 0.35 +1.0 951,198 - Ga0059261_0917 0.36 +0.7 951,198 - Ga0059261_0917 0.36 +0.6 951,528 + Ga0059261_0917 0.71 +1.4 951,529 - Ga0059261_0917 0.71 +1.0 951,529 - Ga0059261_0917 0.71 +1.7 951,529 - Ga0059261_0917 0.71 +0.9 951,529 - Ga0059261_0917 0.71 +0.4 951,529 - Ga0059261_0917 0.71 +0.5 951,529 - Ga0059261_0917 0.71 +0.4 951,549 + Ga0059261_0917 0.74 +0.6 951,549 + Ga0059261_0917 0.74 +1.4 951,550 - Ga0059261_0917 0.74 +0.8 951,624 + Ga0059261_0917 0.82 +1.1 951,624 + Ga0059261_0917 0.82 +0.0 951,624 + Ga0059261_0917 0.82 +0.6 951,625 - Ga0059261_0917 0.82 +0.7 951,629 + Ga0059261_0917 0.82 -0.0 951,629 + Ga0059261_0917 0.82 +1.0 951,629 + Ga0059261_0917 0.82 +0.3 951,629 + Ga0059261_0917 0.82 +0.7 951,629 + Ga0059261_0917 0.82 +1.1 951,630 - Ga0059261_0917 0.82 +1.2 951,630 - Ga0059261_0917 0.82 +0.9 951,630 - Ga0059261_0917 0.82 -0.5 951,630 - Ga0059261_0917 0.82 +0.6 951,630 - Ga0059261_0917 0.82 +0.8 951,630 - Ga0059261_0917 0.82 +0.9 951,766 + +0.9 951,766 + -0.6 951,766 + -0.2 951,828 - -4.2 951,907 - Ga0059261_0918 0.23 -1.9 951,907 - Ga0059261_0918 0.23 -2.3 951,907 - Ga0059261_0918 0.23 -2.0 951,933 + Ga0059261_0918 0.29 -2.6 951,934 - Ga0059261_0918 0.29 +0.4 951,934 - Ga0059261_0918 0.29 -1.5 952,177 + Ga0059261_0918 0.89 -4.1 952,177 + Ga0059261_0918 0.89 -3.3 952,177 + Ga0059261_0918 0.89 -3.8 952,177 + Ga0059261_0918 0.89 -3.0 952,177 + Ga0059261_0918 0.89 -2.8 952,177 + -0.6 952,178 - Ga0059261_0918 0.89 -3.1 952,178 - Ga0059261_0918 0.89 -3.3 952,178 - Ga0059261_0918 0.89 -1.9 952,178 - Ga0059261_0918 0.89 -2.8 952,178 - Ga0059261_0918 0.89 -2.9 952,178 - Ga0059261_0918 0.89 -3.0 952,178 - Ga0059261_0918 0.89 -4.3 952,637 + Ga0059261_0920 0.18 -0.5 952,637 + Ga0059261_0920 0.18 -0.4 952,638 - Ga0059261_0920 0.18 +0.5 952,638 - Ga0059261_0920 0.18 +0.0 952,638 - Ga0059261_0920 0.18 +0.3 952,638 - Ga0059261_0920 0.18 -0.6 952,791 - Ga0059261_0920 0.37 +0.3
Or see this region's nucleotide sequence