Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0848

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0847 and Ga0059261_0848 are separated by 156 nucleotidesGa0059261_0848 and Ga0059261_0849 overlap by 23 nucleotidesGa0059261_0849 and Ga0059261_0850 overlap by 16 nucleotides Ga0059261_0847: Ga0059261_0847 - Acyl-CoA dehydrogenases, at 887,464 to 888,747 _0847 Ga0059261_0848: Ga0059261_0848 - transcriptional regulator, TetR family, at 888,904 to 890,148 _0848 Ga0059261_0849: Ga0059261_0849 - transcriptional regulator, TetR family, at 890,126 to 890,854 _0849 Ga0059261_0850: Ga0059261_0850 - hypothetical protein, at 890,839 to 891,246 _0850 Position (kb) 888 889 890 891Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 887.997 kb on + strand, within Ga0059261_0847at 887.997 kb on + strand, within Ga0059261_0847at 887.998 kb on - strandat 888.234 kb on + strand, within Ga0059261_0847at 888.234 kb on + strand, within Ga0059261_0847at 888.234 kb on + strand, within Ga0059261_0847at 888.234 kb on + strand, within Ga0059261_0847at 888.234 kb on + strand, within Ga0059261_0847at 888.235 kb on - strand, within Ga0059261_0847at 888.239 kb on + strand, within Ga0059261_0847at 888.239 kb on + strand, within Ga0059261_0847at 888.239 kb on + strand, within Ga0059261_0847at 888.239 kb on + strand, within Ga0059261_0847at 888.239 kb on + strand, within Ga0059261_0847at 888.239 kb on + strand, within Ga0059261_0847at 888.239 kb on + strand, within Ga0059261_0847at 888.240 kb on - strand, within Ga0059261_0847at 888.240 kb on - strand, within Ga0059261_0847at 888.240 kb on - strand, within Ga0059261_0847at 888.240 kb on - strand, within Ga0059261_0847at 888.240 kb on - strand, within Ga0059261_0847at 888.240 kb on - strand, within Ga0059261_0847at 888.402 kb on + strand, within Ga0059261_0847at 888.402 kb on + strand, within Ga0059261_0847at 888.402 kb on + strand, within Ga0059261_0847at 888.403 kb on - strand, within Ga0059261_0847at 888.403 kb on - strand, within Ga0059261_0847at 888.482 kb on + strand, within Ga0059261_0847at 888.483 kb on - strandat 888.654 kb on - strandat 888.656 kb on + strandat 888.656 kb on + strandat 888.656 kb on + strandat 888.656 kb on + strandat 888.657 kb on - strandat 888.657 kb on - strandat 888.657 kb on - strandat 888.657 kb on - strandat 888.657 kb on - strandat 888.657 kb on - strandat 888.657 kb on - strandat 888.657 kb on - strandat 888.717 kb on - strandat 888.837 kb on - strandat 888.892 kb on + strandat 888.893 kb on - strandat 889.078 kb on + strand, within Ga0059261_0848at 889.078 kb on + strand, within Ga0059261_0848at 889.079 kb on - strand, within Ga0059261_0848at 889.081 kb on + strand, within Ga0059261_0848at 889.081 kb on + strand, within Ga0059261_0848at 889.081 kb on + strand, within Ga0059261_0848at 889.081 kb on + strand, within Ga0059261_0848at 889.082 kb on - strand, within Ga0059261_0848at 889.082 kb on - strand, within Ga0059261_0848at 889.082 kb on - strand, within Ga0059261_0848at 889.082 kb on - strand, within Ga0059261_0848at 889.082 kb on - strand, within Ga0059261_0848at 889.199 kb on - strandat 889.199 kb on - strand, within Ga0059261_0848at 889.387 kb on + strand, within Ga0059261_0848at 889.387 kb on + strand, within Ga0059261_0848at 889.450 kb on + strand, within Ga0059261_0848at 889.451 kb on - strand, within Ga0059261_0848at 889.680 kb on + strand, within Ga0059261_0848at 889.680 kb on + strand, within Ga0059261_0848at 889.680 kb on + strand, within Ga0059261_0848at 889.680 kb on + strand, within Ga0059261_0848at 889.681 kb on - strand, within Ga0059261_0848at 889.681 kb on - strand, within Ga0059261_0848at 889.681 kb on - strand, within Ga0059261_0848at 889.687 kb on + strand, within Ga0059261_0848at 889.687 kb on + strand, within Ga0059261_0848at 889.687 kb on + strand, within Ga0059261_0848at 889.687 kb on + strand, within Ga0059261_0848at 889.687 kb on + strand, within Ga0059261_0848at 889.688 kb on - strand, within Ga0059261_0848at 889.688 kb on - strand, within Ga0059261_0848at 889.688 kb on - strand, within Ga0059261_0848at 889.688 kb on - strandat 889.729 kb on + strand, within Ga0059261_0848at 889.729 kb on + strand, within Ga0059261_0848at 889.730 kb on - strand, within Ga0059261_0848at 889.730 kb on - strand, within Ga0059261_0848at 889.730 kb on - strand, within Ga0059261_0848at 889.730 kb on - strand, within Ga0059261_0848at 889.943 kb on - strandat 890.095 kb on + strandat 890.095 kb on + strandat 890.096 kb on - strandat 890.111 kb on + strandat 890.111 kb on + strandat 890.112 kb on - strandat 890.112 kb on - strandat 890.291 kb on + strand, within Ga0059261_0849at 890.291 kb on + strand, within Ga0059261_0849at 890.291 kb on + strand, within Ga0059261_0849at 890.292 kb on - strand, within Ga0059261_0849at 890.292 kb on - strand, within Ga0059261_0849at 890.292 kb on - strand, within Ga0059261_0849at 890.292 kb on - strand, within Ga0059261_0849at 890.293 kb on + strand, within Ga0059261_0849at 890.294 kb on - strand, within Ga0059261_0849at 890.405 kb on + strand, within Ga0059261_0849at 890.405 kb on + strand, within Ga0059261_0849at 890.406 kb on - strand, within Ga0059261_0849at 890.406 kb on - strand, within Ga0059261_0849at 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.831 kb on - strandat 890.831 kb on - strandat 890.831 kb on - strandat 891.046 kb on - strand, within Ga0059261_0850at 891.046 kb on - strand, within Ga0059261_0850at 891.057 kb on + strand, within Ga0059261_0850

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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887,997 + Ga0059261_0847 0.42 +0.1
887,997 + Ga0059261_0847 0.42 +0.9
887,998 - +0.8
888,234 + Ga0059261_0847 0.60 +0.6
888,234 + Ga0059261_0847 0.60 -0.3
888,234 + Ga0059261_0847 0.60 -0.4
888,234 + Ga0059261_0847 0.60 -0.2
888,234 + Ga0059261_0847 0.60 +0.1
888,235 - Ga0059261_0847 0.60 +0.2
888,239 + Ga0059261_0847 0.60 +0.1
888,239 + Ga0059261_0847 0.60 -0.0
888,239 + Ga0059261_0847 0.60 -0.1
888,239 + Ga0059261_0847 0.60 +0.2
888,239 + Ga0059261_0847 0.60 -0.2
888,239 + Ga0059261_0847 0.60 -0.2
888,239 + Ga0059261_0847 0.60 -0.0
888,240 - Ga0059261_0847 0.60 +0.9
888,240 - Ga0059261_0847 0.60 -0.8
888,240 - Ga0059261_0847 0.60 +0.2
888,240 - Ga0059261_0847 0.60 +0.1
888,240 - Ga0059261_0847 0.60 +0.3
888,240 - Ga0059261_0847 0.60 +0.8
888,402 + Ga0059261_0847 0.73 +0.3
888,402 + Ga0059261_0847 0.73 -0.0
888,402 + Ga0059261_0847 0.73 +1.0
888,403 - Ga0059261_0847 0.73 -0.4
888,403 - Ga0059261_0847 0.73 -0.8
888,482 + Ga0059261_0847 0.79 +0.8
888,483 - +0.4
888,654 - -0.9
888,656 + -0.2
888,656 + -0.5
888,656 + +0.0
888,656 + -0.6
888,657 - +0.2
888,657 - -0.9
888,657 - -0.4
888,657 - -0.0
888,657 - +0.4
888,657 - +0.3
888,657 - +0.2
888,657 - +0.3
888,717 - -0.7
888,837 - -0.4
888,892 + -0.0
888,893 - -0.3
889,078 + Ga0059261_0848 0.14 +0.3
889,078 + Ga0059261_0848 0.14 +1.4
889,079 - Ga0059261_0848 0.14 -0.4
889,081 + Ga0059261_0848 0.14 +0.8
889,081 + Ga0059261_0848 0.14 +1.1
889,081 + Ga0059261_0848 0.14 +0.3
889,081 + Ga0059261_0848 0.14 +0.5
889,082 - Ga0059261_0848 0.14 +0.8
889,082 - Ga0059261_0848 0.14 +1.1
889,082 - Ga0059261_0848 0.14 +1.8
889,082 - Ga0059261_0848 0.14 -0.3
889,082 - Ga0059261_0848 0.14 +0.2
889,199 - +0.8
889,199 - Ga0059261_0848 0.24 +0.5
889,387 + Ga0059261_0848 0.39 +0.5
889,387 + Ga0059261_0848 0.39 +1.0
889,450 + Ga0059261_0848 0.44 -0.7
889,451 - Ga0059261_0848 0.44 -0.6
889,680 + Ga0059261_0848 0.62 +0.3
889,680 + Ga0059261_0848 0.62 +0.3
889,680 + Ga0059261_0848 0.62 -0.2
889,680 + Ga0059261_0848 0.62 +0.0
889,681 - Ga0059261_0848 0.62 +0.4
889,681 - Ga0059261_0848 0.62 -4.9
889,681 - Ga0059261_0848 0.62 +0.6
889,687 + Ga0059261_0848 0.63 +0.7
889,687 + Ga0059261_0848 0.63 +0.3
889,687 + Ga0059261_0848 0.63 +0.1
889,687 + Ga0059261_0848 0.63 -0.3
889,687 + Ga0059261_0848 0.63 -0.1
889,688 - Ga0059261_0848 0.63 -0.4
889,688 - Ga0059261_0848 0.63 +0.9
889,688 - Ga0059261_0848 0.63 +0.3
889,688 - +1.4
889,729 + Ga0059261_0848 0.66 +0.1
889,729 + Ga0059261_0848 0.66 +0.8
889,730 - Ga0059261_0848 0.66 +1.7
889,730 - Ga0059261_0848 0.66 +0.8
889,730 - Ga0059261_0848 0.66 +0.8
889,730 - Ga0059261_0848 0.66 -0.2
889,943 - +2.8
890,095 + +0.6
890,095 + +0.4
890,096 - -0.4
890,111 + -0.2
890,111 + -1.2
890,112 - +0.8
890,112 - +0.6
890,291 + Ga0059261_0849 0.23 -0.7
890,291 + Ga0059261_0849 0.23 +0.1
890,291 + Ga0059261_0849 0.23 -1.4
890,292 - Ga0059261_0849 0.23 -0.7
890,292 - Ga0059261_0849 0.23 -0.5
890,292 - Ga0059261_0849 0.23 +0.4
890,292 - Ga0059261_0849 0.23 -0.4
890,293 + Ga0059261_0849 0.23 -1.0
890,294 - Ga0059261_0849 0.23 +0.4
890,405 + Ga0059261_0849 0.38 +0.2
890,405 + Ga0059261_0849 0.38 +0.5
890,406 - Ga0059261_0849 0.38 +0.2
890,406 - Ga0059261_0849 0.38 +0.4
890,830 + -0.1
890,830 + +0.1
890,830 + -0.9
890,830 + -0.2
890,830 + +0.1
890,830 + +0.4
890,830 + +0.1
890,830 + +0.1
890,830 + -0.1
890,831 - -0.1
890,831 - -0.0
890,831 - -0.6
891,046 - Ga0059261_0850 0.51 -0.3
891,046 - Ga0059261_0850 0.51 -0.5
891,057 + Ga0059261_0850 0.53 +0.5

Or see this region's nucleotide sequence