Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0592

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0591 and Ga0059261_0592 are separated by 374 nucleotidesGa0059261_0592 and Ga0059261_0593 are separated by 62 nucleotides Ga0059261_0591: Ga0059261_0591 - Outer membrane receptor for ferrienterochelin and colicins, at 621,700 to 624,084 _0591 Ga0059261_0592: Ga0059261_0592 - hypothetical protein, at 624,459 to 624,791 _0592 Ga0059261_0593: Ga0059261_0593 - Outer membrane protein, at 624,854 to 626,116 _0593 Position (kb) 624 625Strain fitness (log2 ratio) -2 -1 0 1 2at 623.495 kb on + strand, within Ga0059261_0591at 623.495 kb on + strand, within Ga0059261_0591at 623.496 kb on - strand, within Ga0059261_0591at 623.496 kb on - strandat 623.496 kb on - strand, within Ga0059261_0591at 623.519 kb on + strand, within Ga0059261_0591at 623.519 kb on + strand, within Ga0059261_0591at 623.519 kb on + strand, within Ga0059261_0591at 623.603 kb on + strand, within Ga0059261_0591at 623.604 kb on - strand, within Ga0059261_0591at 623.604 kb on - strand, within Ga0059261_0591at 623.604 kb on - strand, within Ga0059261_0591at 623.717 kb on + strand, within Ga0059261_0591at 623.717 kb on + strand, within Ga0059261_0591at 623.718 kb on - strand, within Ga0059261_0591at 623.850 kb on + strandat 623.851 kb on - strandat 623.851 kb on - strandat 623.851 kb on - strandat 623.919 kb on + strandat 623.920 kb on - strandat 623.920 kb on - strandat 623.920 kb on - strandat 624.069 kb on + strandat 624.070 kb on - strandat 624.070 kb on - strandat 624.084 kb on + strandat 624.084 kb on + strandat 624.084 kb on + strandat 624.084 kb on + strandat 624.084 kb on + strandat 624.084 kb on + strandat 624.084 kb on + strandat 624.084 kb on + strandat 624.085 kb on - strandat 624.085 kb on - strandat 624.085 kb on - strandat 624.085 kb on - strandat 624.085 kb on - strandat 624.085 kb on - strandat 624.085 kb on - strandat 624.085 kb on - strandat 624.085 kb on - strandat 624.085 kb on - strandat 624.186 kb on + strandat 624.186 kb on + strandat 624.186 kb on + strandat 624.186 kb on + strandat 624.186 kb on + strandat 624.187 kb on - strandat 624.192 kb on + strandat 624.192 kb on + strandat 624.192 kb on + strandat 624.193 kb on - strandat 624.193 kb on - strandat 624.193 kb on - strandat 624.193 kb on - strandat 624.193 kb on - strandat 624.217 kb on + strandat 624.254 kb on + strandat 624.254 kb on + strandat 624.255 kb on - strandat 624.255 kb on - strandat 624.255 kb on - strandat 624.274 kb on + strandat 624.307 kb on - strandat 624.310 kb on - strandat 624.310 kb on - strandat 624.683 kb on + strand, within Ga0059261_0592at 624.683 kb on + strand, within Ga0059261_0592at 624.683 kb on + strand, within Ga0059261_0592at 624.699 kb on + strand, within Ga0059261_0592at 624.699 kb on + strand, within Ga0059261_0592at 624.700 kb on - strand, within Ga0059261_0592at 624.700 kb on - strand, within Ga0059261_0592at 624.835 kb on + strandat 625.271 kb on + strand, within Ga0059261_0593at 625.271 kb on + strand, within Ga0059261_0593at 625.271 kb on + strand, within Ga0059261_0593at 625.271 kb on + strand, within Ga0059261_0593at 625.271 kb on + strand, within Ga0059261_0593at 625.271 kb on + strand, within Ga0059261_0593at 625.272 kb on - strand, within Ga0059261_0593at 625.272 kb on - strand, within Ga0059261_0593at 625.272 kb on - strand, within Ga0059261_0593at 625.272 kb on - strand, within Ga0059261_0593at 625.273 kb on + strand, within Ga0059261_0593at 625.274 kb on - strand, within Ga0059261_0593at 625.462 kb on + strand, within Ga0059261_0593

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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623,495 + Ga0059261_0591 0.75 -0.5
623,495 + Ga0059261_0591 0.75 +0.2
623,496 - Ga0059261_0591 0.75 +0.2
623,496 - +1.0
623,496 - Ga0059261_0591 0.75 -1.6
623,519 + Ga0059261_0591 0.76 -1.0
623,519 + Ga0059261_0591 0.76 -0.6
623,519 + Ga0059261_0591 0.76 +0.0
623,603 + Ga0059261_0591 0.80 -1.4
623,604 - Ga0059261_0591 0.80 +2.0
623,604 - Ga0059261_0591 0.80 +0.5
623,604 - Ga0059261_0591 0.80 -0.1
623,717 + Ga0059261_0591 0.85 -1.0
623,717 + Ga0059261_0591 0.85 -0.3
623,718 - Ga0059261_0591 0.85 -0.0
623,850 + +0.8
623,851 - -0.2
623,851 - +0.9
623,851 - +0.3
623,919 + +0.3
623,920 - -0.6
623,920 - +0.3
623,920 - +0.1
624,069 + -0.4
624,070 - -0.6
624,070 - +0.6
624,084 + +1.2
624,084 + -1.1
624,084 + -0.3
624,084 + +0.0
624,084 + -0.3
624,084 + -0.4
624,084 + +0.6
624,084 + +0.3
624,085 - +0.1
624,085 - +0.1
624,085 - +1.9
624,085 - -0.0
624,085 - -0.4
624,085 - +0.0
624,085 - +0.0
624,085 - +0.5
624,085 - +0.0
624,085 - +0.2
624,186 + +0.2
624,186 + +0.3
624,186 + +0.6
624,186 + +0.2
624,186 + -0.1
624,187 - +0.3
624,192 + +0.2
624,192 + +0.7
624,192 + +0.1
624,193 - +1.9
624,193 - -0.0
624,193 - +1.1
624,193 - -0.6
624,193 - -0.4
624,217 + -0.1
624,254 + +1.4
624,254 + -0.1
624,255 - +0.1
624,255 - +0.6
624,255 - +0.1
624,274 + +0.4
624,307 - -0.4
624,310 - -1.9
624,310 - +0.2
624,683 + Ga0059261_0592 0.67 +0.4
624,683 + Ga0059261_0592 0.67 -0.1
624,683 + Ga0059261_0592 0.67 -1.4
624,699 + Ga0059261_0592 0.72 +0.8
624,699 + Ga0059261_0592 0.72 +0.3
624,700 - Ga0059261_0592 0.72 +0.8
624,700 - Ga0059261_0592 0.72 +0.3
624,835 + -0.6
625,271 + Ga0059261_0593 0.33 -0.8
625,271 + Ga0059261_0593 0.33 -0.3
625,271 + Ga0059261_0593 0.33 +0.1
625,271 + Ga0059261_0593 0.33 +1.0
625,271 + Ga0059261_0593 0.33 +0.1
625,271 + Ga0059261_0593 0.33 +0.0
625,272 - Ga0059261_0593 0.33 +0.1
625,272 - Ga0059261_0593 0.33 -0.1
625,272 - Ga0059261_0593 0.33 -0.2
625,272 - Ga0059261_0593 0.33 +0.5
625,273 + Ga0059261_0593 0.33 -0.2
625,274 - Ga0059261_0593 0.33 -0.6
625,462 + Ga0059261_0593 0.48 -1.5

Or see this region's nucleotide sequence