Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0451

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0450 and Ga0059261_0451 are separated by 184 nucleotidesGa0059261_0451 and Ga0059261_0452 are separated by 37 nucleotidesGa0059261_0452 and Ga0059261_0453 are separated by 23 nucleotides Ga0059261_0450: Ga0059261_0450 - Putative copper export protein, at 435,221 to 436,143 _0450 Ga0059261_0451: Ga0059261_0451 - hypothetical protein, at 436,328 to 436,636 _0451 Ga0059261_0452: Ga0059261_0452 - Predicted membrane protein, at 436,674 to 437,354 _0452 Ga0059261_0453: Ga0059261_0453 - hypothetical protein, at 437,378 to 437,506 _0453 Position (kb) 436 437Strain fitness (log2 ratio) -1 0 1at 435.543 kb on + strand, within Ga0059261_0450at 435.543 kb on + strand, within Ga0059261_0450at 435.544 kb on - strand, within Ga0059261_0450at 435.569 kb on + strand, within Ga0059261_0450at 435.569 kb on + strand, within Ga0059261_0450at 435.570 kb on - strand, within Ga0059261_0450at 435.570 kb on - strand, within Ga0059261_0450at 435.649 kb on + strand, within Ga0059261_0450at 435.650 kb on - strand, within Ga0059261_0450at 435.740 kb on + strand, within Ga0059261_0450at 435.882 kb on + strand, within Ga0059261_0450at 436.038 kb on - strand, within Ga0059261_0450at 436.118 kb on + strandat 436.118 kb on + strandat 436.141 kb on + strandat 436.141 kb on + strandat 436.141 kb on + strandat 436.142 kb on - strandat 436.142 kb on - strandat 436.142 kb on - strandat 436.142 kb on - strandat 436.142 kb on - strandat 436.142 kb on - strandat 436.186 kb on + strandat 436.186 kb on + strandat 436.187 kb on - strandat 436.329 kb on + strandat 436.329 kb on + strandat 436.329 kb on + strandat 436.329 kb on + strandat 436.330 kb on - strandat 436.330 kb on - strandat 436.330 kb on - strandat 436.330 kb on - strandat 436.330 kb on - strandat 436.330 kb on - strandat 436.330 kb on - strandat 436.489 kb on + strand, within Ga0059261_0451at 436.490 kb on - strand, within Ga0059261_0451at 436.540 kb on + strand, within Ga0059261_0451at 436.540 kb on + strand, within Ga0059261_0451at 436.540 kb on + strand, within Ga0059261_0451at 436.540 kb on + strand, within Ga0059261_0451at 436.577 kb on - strand, within Ga0059261_0451at 436.636 kb on + strandat 436.636 kb on + strandat 436.636 kb on + strandat 436.636 kb on + strandat 436.636 kb on + strandat 436.636 kb on + strandat 436.636 kb on + strandat 436.636 kb on + strandat 436.637 kb on - strandat 436.637 kb on - strandat 436.637 kb on - strandat 436.637 kb on - strandat 436.771 kb on + strand, within Ga0059261_0452at 436.771 kb on + strand, within Ga0059261_0452at 436.772 kb on - strand, within Ga0059261_0452at 436.772 kb on - strand, within Ga0059261_0452at 436.772 kb on - strand, within Ga0059261_0452at 436.772 kb on - strand, within Ga0059261_0452at 436.772 kb on - strand, within Ga0059261_0452at 436.797 kb on - strand, within Ga0059261_0452at 436.900 kb on + strand, within Ga0059261_0452at 436.900 kb on + strand, within Ga0059261_0452at 436.900 kb on + strand, within Ga0059261_0452at 436.900 kb on + strand, within Ga0059261_0452at 436.901 kb on - strand, within Ga0059261_0452at 437.330 kb on + strandat 437.330 kb on + strandat 437.330 kb on + strandat 437.330 kb on + strandat 437.330 kb on + strandat 437.330 kb on + strandat 437.330 kb on + strandat 437.330 kb on + strandat 437.330 kb on + strandat 437.330 kb on + strandat 437.331 kb on - strandat 437.331 kb on - strandat 437.331 kb on - strandat 437.331 kb on - strandat 437.331 kb on - strandat 437.331 kb on - strandat 437.333 kb on - strandat 437.342 kb on + strandat 437.342 kb on + strandat 437.342 kb on + strandat 437.343 kb on - strandat 437.343 kb on - strandat 437.343 kb on - strandat 437.358 kb on + strandat 437.358 kb on + strandat 437.358 kb on + strandat 437.358 kb on + strandat 437.359 kb on - strandat 437.359 kb on - strandat 437.359 kb on - strandat 437.380 kb on - strandat 437.390 kb on - strandat 437.519 kb on + strandat 437.519 kb on + strandat 437.519 kb on + strandat 437.519 kb on + strandat 437.520 kb on - strandat 437.520 kb on - strandat 437.520 kb on - strandat 437.520 kb on - strandat 437.520 kb on - strandat 437.520 kb on - strandat 437.522 kb on + strandat 437.522 kb on + strandat 437.522 kb on + strandat 437.522 kb on + strandat 437.523 kb on - strandat 437.548 kb on - strandat 437.627 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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435,543 + Ga0059261_0450 0.35 -0.5
435,543 + Ga0059261_0450 0.35 +0.9
435,544 - Ga0059261_0450 0.35 -0.4
435,569 + Ga0059261_0450 0.38 -0.7
435,569 + Ga0059261_0450 0.38 +1.0
435,570 - Ga0059261_0450 0.38 -1.2
435,570 - Ga0059261_0450 0.38 -0.5
435,649 + Ga0059261_0450 0.46 +0.4
435,650 - Ga0059261_0450 0.46 -1.2
435,740 + Ga0059261_0450 0.56 +0.2
435,882 + Ga0059261_0450 0.72 +0.2
436,038 - Ga0059261_0450 0.89 -0.5
436,118 + +0.1
436,118 + +0.5
436,141 + -0.1
436,141 + -0.9
436,141 + -0.5
436,142 - +0.2
436,142 - +1.1
436,142 - -0.5
436,142 - -0.5
436,142 - -1.0
436,142 - -0.3
436,186 + +0.0
436,186 + -0.4
436,187 - +0.1
436,329 + +1.0
436,329 + +0.2
436,329 + +0.0
436,329 + -0.4
436,330 - +0.6
436,330 - +1.0
436,330 - -0.8
436,330 - -0.0
436,330 - -0.1
436,330 - -0.2
436,330 - -0.6
436,489 + Ga0059261_0451 0.52 +0.7
436,490 - Ga0059261_0451 0.52 +0.0
436,540 + Ga0059261_0451 0.69 +0.2
436,540 + Ga0059261_0451 0.69 -0.3
436,540 + Ga0059261_0451 0.69 +0.6
436,540 + Ga0059261_0451 0.69 +1.0
436,577 - Ga0059261_0451 0.81 -0.3
436,636 + +0.1
436,636 + +0.7
436,636 + +0.3
436,636 + +1.2
436,636 + +0.2
436,636 + -1.4
436,636 + +0.2
436,636 + -0.4
436,637 - -0.3
436,637 - -0.5
436,637 - -0.1
436,637 - +0.4
436,771 + Ga0059261_0452 0.14 +0.6
436,771 + Ga0059261_0452 0.14 -1.2
436,772 - Ga0059261_0452 0.14 -0.3
436,772 - Ga0059261_0452 0.14 -0.6
436,772 - Ga0059261_0452 0.14 +0.6
436,772 - Ga0059261_0452 0.14 -0.2
436,772 - Ga0059261_0452 0.14 +0.2
436,797 - Ga0059261_0452 0.18 +0.1
436,900 + Ga0059261_0452 0.33 +0.2
436,900 + Ga0059261_0452 0.33 +1.3
436,900 + Ga0059261_0452 0.33 -0.8
436,900 + Ga0059261_0452 0.33 +0.8
436,901 - Ga0059261_0452 0.33 -0.3
437,330 + -0.2
437,330 + -1.5
437,330 + +0.4
437,330 + -0.4
437,330 + +0.4
437,330 + -0.9
437,330 + -0.2
437,330 + +0.1
437,330 + +0.2
437,330 + -0.4
437,331 - +0.2
437,331 - +0.1
437,331 - +0.4
437,331 - -0.2
437,331 - -0.3
437,331 - +0.2
437,333 - -0.2
437,342 + -0.3
437,342 + +0.5
437,342 + +0.6
437,343 - -0.3
437,343 - -0.0
437,343 - -0.2
437,358 + -0.3
437,358 + -0.0
437,358 + +0.6
437,358 + +0.0
437,359 - -0.2
437,359 - -0.8
437,359 - +0.1
437,380 - +0.1
437,390 - -0.1
437,519 + +0.0
437,519 + -0.2
437,519 + +1.1
437,519 + -1.0
437,520 - -0.9
437,520 - +0.1
437,520 - +0.1
437,520 - +0.7
437,520 - +0.1
437,520 - +0.1
437,522 + +0.9
437,522 + +0.0
437,522 + -0.2
437,522 + +1.4
437,523 - -0.1
437,548 - +0.2
437,627 + +1.3

Or see this region's nucleotide sequence