Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01343

Experiment: PYE with Nalidixic 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.03 mg/ml
1,456,269	+		CCNA_01342	0.24	+0.3
1,456,320	+		CCNA_01342	0.28	+0.7
1,456,323	+		CCNA_01342	0.29	+1.5
1,456,330	+		CCNA_01342	0.29	+0.3
1,456,330	+		CCNA_01342	0.29	+0.6
1,456,330	+		CCNA_01342	0.29	+1.2
1,456,330	+		CCNA_01342	0.29	+0.5
1,456,330	+		CCNA_01342	0.29	+0.6
1,456,342	+		CCNA_01342	0.30	+0.8
1,456,357	+		CCNA_01342	0.31	+0.8
1,456,375	-		CCNA_01342	0.33	-0.8
1,456,380	+		CCNA_01342	0.33	+0.1
1,456,396	-		CCNA_01342	0.34	-0.8
1,456,423	+		CCNA_01342	0.36	+0.1
1,456,548	-		CCNA_01342	0.46	-0.9
1,456,572	+		CCNA_01342	0.48	+0.9
1,456,583	+		CCNA_01342	0.49	-2.1
1,456,591	-		CCNA_01342	0.49	+0.1
1,456,595	+		CCNA_01342	0.49	+0.4
1,456,632	-		CCNA_01342	0.52	-1.4
1,456,665	+		CCNA_01342	0.55	+1.0
1,456,665	+		CCNA_01342	0.55	+0.8
1,456,665	+		CCNA_01342	0.55	+0.5
1,456,673	-		CCNA_01342	0.55	+0.2
1,456,673	-		CCNA_01342	0.55	-1.1
1,456,673	-		CCNA_01342	0.55	+1.8
1,456,673	-		CCNA_01342	0.55	-1.4
1,456,684	-		CCNA_01342	0.56	+0.7
1,456,686	+		CCNA_01342	0.56	+1.5
1,456,690	+		CCNA_01342	0.57	+0.6
1,456,699	-		CCNA_01342	0.57	+0.1
1,456,712	+		CCNA_01342	0.58	-0.9
1,456,720	-		CCNA_01342	0.59	-2.3
1,456,720	-		CCNA_01342	0.59	-1.6
1,456,720	-		CCNA_01342	0.59	-2.3
1,456,720	-		CCNA_01342	0.59	+0.4
1,456,720	-		CCNA_01342	0.59	+0.7
1,456,743	-		CCNA_01342	0.61	+0.4
1,456,811	+		CCNA_01342	0.66	-0.6
1,456,904	+		CCNA_01342	0.73	+0.7
1,456,904	+		CCNA_01342	0.73	+1.2
1,456,925	+		CCNA_01342	0.75	+0.7
1,456,925	+		CCNA_01342	0.75	-0.1
1,456,926	+		CCNA_01342	0.75	+0.4
1,456,934	-		CCNA_01342	0.75	-0.9
1,456,961	+				+1.8
1,456,969	-		CCNA_01342	0.78	+0.4
1,456,969	-		CCNA_01342	0.78	+0.3
1,456,969	-		CCNA_01342	0.78	+0.2
1,457,023	-		CCNA_01342	0.82	+0.2
1,457,071	-		CCNA_01342	0.86	-0.8
1,457,075	+		CCNA_01342	0.86	-0.2
1,457,083	-		CCNA_01342	0.87	-0.2
1,457,117	-		CCNA_01342	0.90	-0.4
1,457,149	+				+0.2
1,457,174	+				+0.1
1,457,194	+				+0.3
1,457,202	+				-2.2
1,457,202	-				-1.5
1,457,242	-				+1.5
1,457,254	-				+0.8
1,457,256	+				+1.6
1,457,284	+				+0.3
1,457,290	+				+0.0
1,457,292	-				+0.9
1,457,342	+		CCNA_01343	0.11	+0.5
1,457,354	+		CCNA_01343	0.13	+1.8
1,457,367	-		CCNA_01343	0.15	-0.3
1,457,386	+		CCNA_01343	0.17	+0.2
1,457,430	-		CCNA_01343	0.22	+0.6
1,457,436	-		CCNA_01343	0.23	+0.5
1,457,444	+		CCNA_01343	0.24	+1.8
1,457,457	-		CCNA_01343	0.26	-0.4
1,457,457	-		CCNA_01343	0.26	+0.6
1,457,481	+		CCNA_01343	0.29	+0.4
1,457,482	+		CCNA_01343	0.29	+0.4
1,457,490	-		CCNA_01343	0.30	+0.2
1,457,504	+		CCNA_01343	0.31	-0.1
1,457,539	+		CCNA_01343	0.36	-0.4
1,457,563	+		CCNA_01343	0.39	+0.9
1,457,571	-		CCNA_01343	0.40	+0.2
1,457,586	-		CCNA_01343	0.41	-0.0
1,457,595	+		CCNA_01343	0.43	+0.4
1,457,622	+		CCNA_01343	0.46	-0.0
1,457,684	+		CCNA_01343	0.54	+1.0
1,457,692	-		CCNA_01343	0.54	-0.3
1,457,770	-		CCNA_01343	0.64	-1.0
1,457,776	+		CCNA_01343	0.65	+0.1
1,457,789	-		CCNA_01343	0.66	+0.3
1,457,850	-		CCNA_01343	0.74	+0.1
1,457,909	+		CCNA_01343	0.81	+0.8
1,457,917	-		CCNA_01343	0.82	-1.1
1,458,005	-				+1.4
1,458,029	-				+0.3
1,458,039	-				-1.6
1,458,055	+				+1.0
1,458,055	+				+0.6
1,458,064	-				-0.8
1,458,072	+				+2.2
1,458,090	+				+1.4
1,458,090	+				+1.6
1,458,090	-				+0.8
1,458,090	-				-0.1
1,458,098	-				-0.4
1,458,100	+				+0.6
1,458,176	+		CCNA_01344	0.24	+0.9
1,458,185	+		CCNA_01344	0.26	+0.2
1,458,203	+		CCNA_01344	0.29	-0.2
1,458,282	-		CCNA_01344	0.44	-0.8
1,458,282	-		CCNA_01344	0.44	+0.8
1,458,313	+		CCNA_01344	0.49	+3.4
1,458,323	+		CCNA_01344	0.51	+0.4
1,458,364	+		CCNA_01344	0.59	+1.0
1,458,364	+		CCNA_01344	0.59	+0.7
1,458,372	-		CCNA_01344	0.60	-0.5
1,458,413	+		CCNA_01344	0.68	+1.5
1,458,416	-		CCNA_01344	0.69	+1.2
1,458,421	-		CCNA_01344	0.69	-2.0
1,458,427	+		CCNA_01344	0.71	+1.4
1,458,427	+		CCNA_01344	0.71	+0.5
1,458,432	+		CCNA_01344	0.72	+0.9
1,458,440	-		CCNA_01344	0.73	+0.2
1,458,444	+		CCNA_01344	0.74	+1.0
1,458,457	+		CCNA_01344	0.76	+0.1
1,458,457	+		CCNA_01344	0.76	+2.0
1,458,468	+		CCNA_01344	0.78	+0.2
1,458,513	-		CCNA_01344	0.87	-0.5
1,458,578	+				+1.1
1,458,602	+				+1.5
1,458,638	-				-0.1
1,458,643	+				+0.3
1,458,648	-				+1.0
1,458,661	-				-0.4
1,458,661	-				-0.1
1,458,692	-				-0.2
1,458,698	-				-0.4
1,458,722	-				+1.8
1,458,815	+				+0.1
1,458,815	+				-2.0
1,458,815	+				-0.6
1,458,815	+				-1.0
1,458,815	+				+1.7
1,458,820	+				-0.5
1,458,823	-				-2.4
1,458,823	-				-1.4
1,458,832	+		CCNA_01345	0.11	+2.2
1,458,849	+		CCNA_01345	0.13	-0.5
1,458,849	+		CCNA_01345	0.13	+0.1
1,458,867	-		CCNA_01345	0.16	+0.9
1,458,943	-		CCNA_01345	0.25	+0.1
1,458,973	+		CCNA_01345	0.29	+1.9
1,458,981	-		CCNA_01345	0.30	-0.2
1,458,981	-		CCNA_01345	0.30	-0.9
1,459,052	-		CCNA_01345	0.39	-1.2
1,459,052	-		CCNA_01345	0.39	-1.0
1,459,052	-		CCNA_01345	0.39	-1.1
1,459,053	-		CCNA_01345	0.39	+0.1