Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00881

Experiment: PYE with Nalidixic 0.03 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00880 and CCNA_00881 overlap by 4 nucleotidesCCNA_00881 and CCNA_00882 are separated by 155 nucleotides CCNA_00880: CCNA_00880 - hypothetical protein, at 959,391 to 960,950 _00880 CCNA_00881: CCNA_00881 - ABC transporter ATP-binding protein, at 960,947 to 961,699 _00881 CCNA_00882: CCNA_00882 - hypothetical protein, at 961,855 to 962,853 _00882 Position (kb) 960 961 962Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 959.966 kb on - strand, within CCNA_00880at 959.990 kb on - strand, within CCNA_00880at 959.990 kb on - strand, within CCNA_00880at 959.997 kb on + strand, within CCNA_00880at 960.010 kb on - strand, within CCNA_00880at 960.054 kb on - strand, within CCNA_00880at 960.062 kb on - strand, within CCNA_00880at 960.078 kb on - strand, within CCNA_00880at 960.158 kb on - strand, within CCNA_00880at 960.173 kb on + strand, within CCNA_00880at 960.173 kb on + strand, within CCNA_00880at 960.173 kb on + strand, within CCNA_00880at 960.173 kb on + strand, within CCNA_00880at 960.173 kb on + strand, within CCNA_00880at 960.173 kb on + strand, within CCNA_00880at 960.181 kb on - strand, within CCNA_00880at 960.181 kb on - strand, within CCNA_00880at 960.181 kb on - strand, within CCNA_00880at 960.181 kb on - strand, within CCNA_00880at 960.231 kb on - strand, within CCNA_00880at 960.247 kb on - strand, within CCNA_00880at 960.278 kb on + strand, within CCNA_00880at 960.279 kb on + strand, within CCNA_00880at 960.287 kb on - strand, within CCNA_00880at 960.287 kb on - strand, within CCNA_00880at 960.331 kb on + strand, within CCNA_00880at 960.339 kb on - strand, within CCNA_00880at 960.351 kb on + strand, within CCNA_00880at 960.359 kb on - strand, within CCNA_00880at 960.359 kb on - strand, within CCNA_00880at 960.369 kb on - strand, within CCNA_00880at 960.374 kb on - strand, within CCNA_00880at 960.392 kb on + strand, within CCNA_00880at 960.394 kb on + strand, within CCNA_00880at 960.394 kb on - strand, within CCNA_00880at 960.409 kb on + strand, within CCNA_00880at 960.417 kb on - strand, within CCNA_00880at 960.436 kb on + strand, within CCNA_00880at 960.440 kb on + strand, within CCNA_00880at 960.462 kb on + strand, within CCNA_00880at 960.477 kb on + strandat 960.483 kb on - strand, within CCNA_00880at 960.494 kb on + strand, within CCNA_00880at 960.497 kb on - strand, within CCNA_00880at 960.512 kb on - strand, within CCNA_00880at 960.514 kb on + strand, within CCNA_00880at 960.584 kb on + strand, within CCNA_00880at 960.593 kb on - strand, within CCNA_00880at 960.593 kb on - strand, within CCNA_00880at 960.615 kb on - strand, within CCNA_00880at 960.623 kb on + strand, within CCNA_00880at 960.642 kb on + strand, within CCNA_00880at 960.650 kb on - strand, within CCNA_00880at 960.665 kb on - strand, within CCNA_00880at 960.688 kb on + strand, within CCNA_00880at 960.696 kb on - strand, within CCNA_00880at 960.696 kb on - strand, within CCNA_00880at 960.722 kb on + strand, within CCNA_00880at 960.730 kb on - strand, within CCNA_00880at 960.834 kb on + strandat 960.834 kb on + strandat 960.842 kb on - strandat 960.842 kb on - strandat 960.842 kb on - strandat 960.864 kb on + strandat 960.888 kb on + strandat 960.946 kb on + strandat 960.952 kb on + strandat 960.963 kb on + strandat 961.019 kb on + strandat 961.086 kb on + strand, within CCNA_00881at 961.086 kb on + strand, within CCNA_00881at 961.094 kb on - strand, within CCNA_00881at 961.116 kb on - strand, within CCNA_00881at 961.151 kb on + strand, within CCNA_00881at 961.164 kb on + strand, within CCNA_00881at 961.190 kb on + strand, within CCNA_00881at 961.199 kb on + strand, within CCNA_00881at 961.207 kb on - strand, within CCNA_00881at 961.207 kb on - strand, within CCNA_00881at 961.207 kb on - strand, within CCNA_00881at 961.208 kb on - strand, within CCNA_00881at 961.217 kb on + strand, within CCNA_00881at 961.233 kb on - strand, within CCNA_00881at 961.246 kb on - strand, within CCNA_00881at 961.260 kb on + strand, within CCNA_00881at 961.275 kb on - strand, within CCNA_00881at 961.301 kb on - strand, within CCNA_00881at 961.318 kb on + strand, within CCNA_00881at 961.326 kb on - strand, within CCNA_00881at 961.328 kb on + strand, within CCNA_00881at 961.337 kb on - strand, within CCNA_00881at 961.344 kb on + strand, within CCNA_00881at 961.344 kb on + strand, within CCNA_00881at 961.344 kb on + strand, within CCNA_00881at 961.344 kb on + strand, within CCNA_00881at 961.344 kb on + strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.352 kb on - strand, within CCNA_00881at 961.365 kb on + strand, within CCNA_00881at 961.403 kb on + strand, within CCNA_00881at 961.451 kb on + strand, within CCNA_00881at 961.462 kb on - strand, within CCNA_00881at 961.529 kb on + strand, within CCNA_00881at 961.529 kb on + strand, within CCNA_00881at 961.536 kb on - strand, within CCNA_00881at 961.554 kb on + strand, within CCNA_00881at 961.569 kb on + strand, within CCNA_00881at 961.574 kb on + strand, within CCNA_00881at 961.590 kb on + strandat 961.595 kb on + strand, within CCNA_00881at 961.598 kb on - strand, within CCNA_00881at 961.603 kb on - strand, within CCNA_00881at 961.618 kb on + strand, within CCNA_00881at 961.646 kb on - strandat 961.646 kb on - strandat 961.646 kb on - strandat 961.646 kb on - strandat 961.658 kb on - strandat 961.677 kb on - strandat 961.682 kb on + strandat 961.690 kb on - strandat 961.702 kb on - strandat 961.714 kb on - strandat 961.733 kb on - strandat 961.743 kb on + strandat 961.828 kb on - strandat 961.848 kb on - strandat 961.853 kb on + strandat 961.861 kb on - strandat 961.861 kb on - strandat 961.879 kb on + strandat 961.889 kb on + strandat 961.903 kb on - strandat 961.942 kb on - strandat 961.957 kb on + strand, within CCNA_00882at 962.002 kb on - strand, within CCNA_00882at 962.004 kb on + strand, within CCNA_00882at 962.006 kb on + strand, within CCNA_00882at 962.028 kb on - strand, within CCNA_00882at 962.036 kb on + strand, within CCNA_00882at 962.048 kb on + strand, within CCNA_00882at 962.054 kb on - strand, within CCNA_00882at 962.089 kb on - strand, within CCNA_00882at 962.094 kb on - strand, within CCNA_00882at 962.095 kb on + strand, within CCNA_00882at 962.095 kb on + strand, within CCNA_00882at 962.101 kb on - strand, within CCNA_00882at 962.103 kb on - strand, within CCNA_00882at 962.110 kb on - strand, within CCNA_00882at 962.153 kb on + strand, within CCNA_00882at 962.153 kb on + strand, within CCNA_00882at 962.161 kb on - strand, within CCNA_00882at 962.251 kb on + strand, within CCNA_00882at 962.296 kb on + strand, within CCNA_00882at 962.296 kb on + strand, within CCNA_00882at 962.296 kb on + strand, within CCNA_00882at 962.296 kb on + strand, within CCNA_00882at 962.306 kb on - strand, within CCNA_00882at 962.323 kb on + strand, within CCNA_00882at 962.323 kb on + strand, within CCNA_00882at 962.331 kb on - strand, within CCNA_00882at 962.331 kb on - strand, within CCNA_00882at 962.331 kb on - strand, within CCNA_00882at 962.331 kb on - strand, within CCNA_00882at 962.344 kb on + strand, within CCNA_00882at 962.344 kb on + strand, within CCNA_00882at 962.363 kb on + strand, within CCNA_00882at 962.375 kb on + strand, within CCNA_00882at 962.376 kb on + strand, within CCNA_00882at 962.376 kb on + strand, within CCNA_00882at 962.428 kb on - strand, within CCNA_00882at 962.445 kb on + strand, within CCNA_00882at 962.463 kb on - strand, within CCNA_00882at 962.468 kb on + strand, within CCNA_00882at 962.481 kb on + strand, within CCNA_00882at 962.481 kb on + strand, within CCNA_00882at 962.489 kb on - strand, within CCNA_00882at 962.489 kb on - strand, within CCNA_00882at 962.509 kb on - strand, within CCNA_00882at 962.522 kb on - strand, within CCNA_00882at 962.553 kb on - strand, within CCNA_00882at 962.553 kb on - strand, within CCNA_00882at 962.560 kb on + strand, within CCNA_00882at 962.576 kb on + strand, within CCNA_00882at 962.644 kb on + strand, within CCNA_00882at 962.665 kb on + strand, within CCNA_00882at 962.680 kb on + strand, within CCNA_00882at 962.688 kb on - strand, within CCNA_00882

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.03 mg/ml
remove
959,966 - CCNA_00880 0.37 +0.4
959,990 - CCNA_00880 0.38 -0.9
959,990 - CCNA_00880 0.38 -0.0
959,997 + CCNA_00880 0.39 -1.6
960,010 - CCNA_00880 0.40 -0.0
960,054 - CCNA_00880 0.42 +0.6
960,062 - CCNA_00880 0.43 -0.5
960,078 - CCNA_00880 0.44 +0.8
960,158 - CCNA_00880 0.49 +0.9
960,173 + CCNA_00880 0.50 +0.0
960,173 + CCNA_00880 0.50 +0.8
960,173 + CCNA_00880 0.50 +0.5
960,173 + CCNA_00880 0.50 -0.6
960,173 + CCNA_00880 0.50 -0.3
960,173 + CCNA_00880 0.50 -0.1
960,181 - CCNA_00880 0.51 -0.3
960,181 - CCNA_00880 0.51 -0.7
960,181 - CCNA_00880 0.51 +0.4
960,181 - CCNA_00880 0.51 -1.3
960,231 - CCNA_00880 0.54 -2.3
960,247 - CCNA_00880 0.55 -0.5
960,278 + CCNA_00880 0.57 -0.7
960,279 + CCNA_00880 0.57 -0.3
960,287 - CCNA_00880 0.57 -0.5
960,287 - CCNA_00880 0.57 -1.2
960,331 + CCNA_00880 0.60 -0.5
960,339 - CCNA_00880 0.61 -1.0
960,351 + CCNA_00880 0.62 -0.9
960,359 - CCNA_00880 0.62 +0.6
960,359 - CCNA_00880 0.62 +0.6
960,369 - CCNA_00880 0.63 -0.8
960,374 - CCNA_00880 0.63 -2.4
960,392 + CCNA_00880 0.64 -0.8
960,394 + CCNA_00880 0.64 -0.1
960,394 - CCNA_00880 0.64 +0.0
960,409 + CCNA_00880 0.65 -1.1
960,417 - CCNA_00880 0.66 -2.0
960,436 + CCNA_00880 0.67 +0.6
960,440 + CCNA_00880 0.67 -2.4
960,462 + CCNA_00880 0.69 -0.5
960,477 + +1.4
960,483 - CCNA_00880 0.70 -0.5
960,494 + CCNA_00880 0.71 -1.5
960,497 - CCNA_00880 0.71 +0.2
960,512 - CCNA_00880 0.72 -0.4
960,514 + CCNA_00880 0.72 -0.9
960,584 + CCNA_00880 0.76 +0.3
960,593 - CCNA_00880 0.77 +0.4
960,593 - CCNA_00880 0.77 -1.0
960,615 - CCNA_00880 0.78 +1.1
960,623 + CCNA_00880 0.79 -1.6
960,642 + CCNA_00880 0.80 +0.6
960,650 - CCNA_00880 0.81 -0.0
960,665 - CCNA_00880 0.82 -0.3
960,688 + CCNA_00880 0.83 -0.7
960,696 - CCNA_00880 0.84 +0.9
960,696 - CCNA_00880 0.84 -1.0
960,722 + CCNA_00880 0.85 -1.1
960,730 - CCNA_00880 0.86 +0.3
960,834 + -0.0
960,834 + -1.5
960,842 - +0.4
960,842 - -0.1
960,842 - +0.4
960,864 + -0.5
960,888 + +0.2
960,946 + -0.7
960,952 + -1.2
960,963 + -0.6
961,019 + -1.1
961,086 + CCNA_00881 0.18 +0.4
961,086 + CCNA_00881 0.18 -0.1
961,094 - CCNA_00881 0.20 +0.1
961,116 - CCNA_00881 0.22 +0.3
961,151 + CCNA_00881 0.27 -0.3
961,164 + CCNA_00881 0.29 -2.3
961,190 + CCNA_00881 0.32 +1.4
961,199 + CCNA_00881 0.33 -1.8
961,207 - CCNA_00881 0.35 -1.7
961,207 - CCNA_00881 0.35 -1.6
961,207 - CCNA_00881 0.35 +0.6
961,208 - CCNA_00881 0.35 +0.0
961,217 + CCNA_00881 0.36 -0.5
961,233 - CCNA_00881 0.38 -1.3
961,246 - CCNA_00881 0.40 +0.0
961,260 + CCNA_00881 0.42 -2.7
961,275 - CCNA_00881 0.44 +0.3
961,301 - CCNA_00881 0.47 -2.6
961,318 + CCNA_00881 0.49 -1.9
961,326 - CCNA_00881 0.50 -0.2
961,328 + CCNA_00881 0.51 -1.8
961,337 - CCNA_00881 0.52 -1.0
961,344 + CCNA_00881 0.53 +1.5
961,344 + CCNA_00881 0.53 -2.6
961,344 + CCNA_00881 0.53 -1.0
961,344 + CCNA_00881 0.53 +0.6
961,344 + CCNA_00881 0.53 -0.3
961,352 - CCNA_00881 0.54 +0.2
961,352 - CCNA_00881 0.54 -1.9
961,352 - CCNA_00881 0.54 -2.3
961,352 - CCNA_00881 0.54 -1.1
961,352 - CCNA_00881 0.54 -0.8
961,352 - CCNA_00881 0.54 +0.4
961,352 - CCNA_00881 0.54 -2.3
961,352 - CCNA_00881 0.54 -1.3
961,365 + CCNA_00881 0.56 -0.8
961,403 + CCNA_00881 0.61 -1.5
961,451 + CCNA_00881 0.67 -3.1
961,462 - CCNA_00881 0.68 +0.5
961,529 + CCNA_00881 0.77 -0.8
961,529 + CCNA_00881 0.77 -0.5
961,536 - CCNA_00881 0.78 +0.0
961,554 + CCNA_00881 0.81 -1.6
961,569 + CCNA_00881 0.83 +0.9
961,574 + CCNA_00881 0.83 -1.9
961,590 + +2.6
961,595 + CCNA_00881 0.86 -0.4
961,598 - CCNA_00881 0.86 -1.8
961,603 - CCNA_00881 0.87 +0.5
961,618 + CCNA_00881 0.89 -0.6
961,646 - -0.0
961,646 - -1.6
961,646 - -1.4
961,646 - -1.3
961,658 - -1.3
961,677 - +1.6
961,682 + +0.0
961,690 - -0.3
961,702 - -1.2
961,714 - +1.3
961,733 - +0.6
961,743 + -0.1
961,828 - +0.2
961,848 - +0.5
961,853 + +0.6
961,861 - -2.0
961,861 - -1.4
961,879 + -0.5
961,889 + +0.7
961,903 - -1.3
961,942 - -2.9
961,957 + CCNA_00882 0.10 -1.6
962,002 - CCNA_00882 0.15 -1.3
962,004 + CCNA_00882 0.15 -0.5
962,006 + CCNA_00882 0.15 +1.2
962,028 - CCNA_00882 0.17 -0.9
962,036 + CCNA_00882 0.18 -1.1
962,048 + CCNA_00882 0.19 -0.0
962,054 - CCNA_00882 0.20 -1.5
962,089 - CCNA_00882 0.23 +0.3
962,094 - CCNA_00882 0.24 -0.7
962,095 + CCNA_00882 0.24 -1.4
962,095 + CCNA_00882 0.24 -2.8
962,101 - CCNA_00882 0.25 -0.5
962,103 - CCNA_00882 0.25 -0.2
962,110 - CCNA_00882 0.26 -1.8
962,153 + CCNA_00882 0.30 -1.4
962,153 + CCNA_00882 0.30 +0.6
962,161 - CCNA_00882 0.31 -1.1
962,251 + CCNA_00882 0.40 -0.6
962,296 + CCNA_00882 0.44 -2.6
962,296 + CCNA_00882 0.44 -1.3
962,296 + CCNA_00882 0.44 +0.5
962,296 + CCNA_00882 0.44 -0.8
962,306 - CCNA_00882 0.45 -1.8
962,323 + CCNA_00882 0.47 -0.1
962,323 + CCNA_00882 0.47 -0.2
962,331 - CCNA_00882 0.48 -0.3
962,331 - CCNA_00882 0.48 -1.0
962,331 - CCNA_00882 0.48 -0.1
962,331 - CCNA_00882 0.48 +0.5
962,344 + CCNA_00882 0.49 +0.0
962,344 + CCNA_00882 0.49 +0.2
962,363 + CCNA_00882 0.51 -1.0
962,375 + CCNA_00882 0.52 -0.3
962,376 + CCNA_00882 0.52 -1.9
962,376 + CCNA_00882 0.52 -0.5
962,428 - CCNA_00882 0.57 +1.0
962,445 + CCNA_00882 0.59 +0.6
962,463 - CCNA_00882 0.61 +0.0
962,468 + CCNA_00882 0.61 -0.7
962,481 + CCNA_00882 0.63 -1.6
962,481 + CCNA_00882 0.63 -1.6
962,489 - CCNA_00882 0.63 +0.6
962,489 - CCNA_00882 0.63 -0.1
962,509 - CCNA_00882 0.65 -0.3
962,522 - CCNA_00882 0.67 -1.7
962,553 - CCNA_00882 0.70 -1.0
962,553 - CCNA_00882 0.70 +0.6
962,560 + CCNA_00882 0.71 -0.4
962,576 + CCNA_00882 0.72 -0.3
962,644 + CCNA_00882 0.79 -0.5
962,665 + CCNA_00882 0.81 +1.6
962,680 + CCNA_00882 0.83 -0.3
962,688 - CCNA_00882 0.83 -0.3

Or see this region's nucleotide sequence