Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00652

Experiment: PYE with Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00651 and CCNA_00652 overlap by 4 nucleotidesCCNA_00652 and CCNA_00653 are separated by 0 nucleotides CCNA_00651: CCNA_00651 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data), at 701,776 to 704,244 _00651 CCNA_00652: CCNA_00652 - nitrite reductase (NAD(P)H) small subunit, at 704,241 to 704,585 _00652 CCNA_00653: CCNA_00653 - Nitrate reductase (EC 1.7.99.4) (from data), at 704,586 to 707,264 _00653 Position (kb) 704 705Strain fitness (log2 ratio) -2 -1 0 1 2 3at 703.243 kb on - strand, within CCNA_00651at 703.243 kb on - strand, within CCNA_00651at 703.243 kb on - strand, within CCNA_00651at 703.261 kb on + strand, within CCNA_00651at 703.269 kb on - strand, within CCNA_00651at 703.334 kb on - strand, within CCNA_00651at 703.341 kb on - strand, within CCNA_00651at 703.341 kb on - strand, within CCNA_00651at 703.341 kb on - strand, within CCNA_00651at 703.351 kb on + strand, within CCNA_00651at 703.386 kb on - strand, within CCNA_00651at 703.386 kb on - strand, within CCNA_00651at 703.386 kb on - strand, within CCNA_00651at 703.388 kb on + strand, within CCNA_00651at 703.388 kb on + strand, within CCNA_00651at 703.390 kb on + strand, within CCNA_00651at 703.390 kb on + strand, within CCNA_00651at 703.396 kb on - strand, within CCNA_00651at 703.442 kb on + strand, within CCNA_00651at 703.442 kb on + strand, within CCNA_00651at 703.477 kb on + strand, within CCNA_00651at 703.503 kb on + strand, within CCNA_00651at 703.511 kb on - strand, within CCNA_00651at 703.517 kb on - strand, within CCNA_00651at 703.526 kb on + strand, within CCNA_00651at 703.555 kb on + strand, within CCNA_00651at 703.563 kb on - strand, within CCNA_00651at 703.568 kb on - strand, within CCNA_00651at 703.592 kb on - strand, within CCNA_00651at 703.654 kb on - strand, within CCNA_00651at 703.659 kb on - strand, within CCNA_00651at 703.671 kb on + strand, within CCNA_00651at 703.678 kb on + strand, within CCNA_00651at 703.678 kb on + strand, within CCNA_00651at 703.683 kb on + strand, within CCNA_00651at 703.689 kb on + strand, within CCNA_00651at 703.691 kb on + strand, within CCNA_00651at 703.695 kb on + strand, within CCNA_00651at 703.704 kb on - strand, within CCNA_00651at 703.708 kb on + strand, within CCNA_00651at 703.708 kb on + strand, within CCNA_00651at 703.709 kb on - strand, within CCNA_00651at 703.716 kb on - strand, within CCNA_00651at 703.721 kb on - strand, within CCNA_00651at 703.755 kb on - strand, within CCNA_00651at 703.755 kb on - strand, within CCNA_00651at 703.756 kb on - strand, within CCNA_00651at 703.756 kb on - strand, within CCNA_00651at 703.757 kb on + strand, within CCNA_00651at 703.799 kb on + strand, within CCNA_00651at 703.814 kb on + strand, within CCNA_00651at 703.815 kb on + strand, within CCNA_00651at 703.817 kb on - strand, within CCNA_00651at 703.817 kb on - strand, within CCNA_00651at 703.822 kb on - strand, within CCNA_00651at 703.836 kb on - strand, within CCNA_00651at 703.845 kb on + strand, within CCNA_00651at 703.848 kb on - strand, within CCNA_00651at 703.850 kb on + strand, within CCNA_00651at 703.858 kb on - strand, within CCNA_00651at 703.863 kb on - strand, within CCNA_00651at 703.889 kb on - strand, within CCNA_00651at 703.935 kb on - strand, within CCNA_00651at 703.959 kb on - strand, within CCNA_00651at 703.974 kb on + strand, within CCNA_00651at 703.984 kb on + strand, within CCNA_00651at 703.991 kb on - strand, within CCNA_00651at 703.991 kb on - strand, within CCNA_00651at 703.992 kb on - strand, within CCNA_00651at 704.010 kb on + strandat 704.010 kb on + strandat 704.015 kb on + strandat 704.015 kb on + strandat 704.015 kb on + strandat 704.018 kb on - strandat 704.020 kb on + strandat 704.023 kb on - strandat 704.023 kb on - strandat 704.023 kb on - strandat 704.023 kb on - strandat 704.023 kb on - strandat 704.030 kb on + strandat 704.068 kb on + strandat 704.076 kb on - strandat 704.109 kb on + strandat 704.117 kb on - strandat 704.119 kb on + strandat 704.119 kb on + strandat 704.128 kb on + strandat 704.229 kb on + strandat 704.277 kb on - strand, within CCNA_00652at 704.319 kb on - strand, within CCNA_00652at 704.321 kb on + strand, within CCNA_00652at 704.356 kb on - strand, within CCNA_00652at 704.427 kb on + strand, within CCNA_00652at 704.427 kb on + strand, within CCNA_00652at 704.427 kb on + strand, within CCNA_00652at 704.429 kb on - strand, within CCNA_00652at 704.435 kb on - strand, within CCNA_00652at 704.480 kb on - strand, within CCNA_00652at 704.507 kb on + strand, within CCNA_00652at 704.508 kb on + strand, within CCNA_00652at 704.508 kb on + strand, within CCNA_00652at 704.515 kb on - strand, within CCNA_00652at 704.515 kb on - strand, within CCNA_00652at 704.516 kb on - strand, within CCNA_00652at 704.525 kb on + strand, within CCNA_00652at 704.559 kb on - strandat 704.569 kb on - strandat 704.639 kb on - strandat 704.652 kb on + strandat 704.662 kb on + strandat 704.759 kb on - strandat 704.759 kb on - strandat 704.797 kb on + strandat 704.799 kb on + strandat 704.817 kb on + strandat 704.818 kb on + strandat 704.877 kb on + strand, within CCNA_00653at 704.877 kb on + strand, within CCNA_00653at 704.877 kb on + strand, within CCNA_00653at 704.877 kb on + strand, within CCNA_00653at 704.877 kb on + strand, within CCNA_00653at 704.896 kb on + strand, within CCNA_00653at 704.913 kb on + strand, within CCNA_00653at 704.913 kb on + strand, within CCNA_00653at 704.920 kb on - strand, within CCNA_00653at 704.927 kb on + strand, within CCNA_00653at 704.956 kb on - strand, within CCNA_00653at 704.963 kb on - strand, within CCNA_00653at 704.996 kb on + strand, within CCNA_00653at 705.004 kb on - strand, within CCNA_00653at 705.008 kb on + strand, within CCNA_00653at 705.012 kb on - strand, within CCNA_00653at 705.058 kb on + strand, within CCNA_00653at 705.067 kb on + strand, within CCNA_00653at 705.080 kb on - strand, within CCNA_00653at 705.085 kb on - strand, within CCNA_00653at 705.085 kb on - strand, within CCNA_00653at 705.099 kb on + strand, within CCNA_00653at 705.101 kb on + strand, within CCNA_00653at 705.111 kb on + strand, within CCNA_00653at 705.111 kb on + strand, within CCNA_00653at 705.119 kb on - strand, within CCNA_00653at 705.119 kb on - strand, within CCNA_00653at 705.121 kb on + strand, within CCNA_00653at 705.124 kb on - strand, within CCNA_00653at 705.129 kb on - strand, within CCNA_00653at 705.211 kb on + strand, within CCNA_00653at 705.211 kb on + strand, within CCNA_00653at 705.230 kb on - strand, within CCNA_00653at 705.259 kb on + strand, within CCNA_00653at 705.284 kb on - strand, within CCNA_00653at 705.331 kb on + strand, within CCNA_00653at 705.331 kb on - strand, within CCNA_00653at 705.352 kb on - strand, within CCNA_00653at 705.399 kb on + strand, within CCNA_00653at 705.399 kb on + strand, within CCNA_00653at 705.399 kb on + strand, within CCNA_00653at 705.407 kb on - strand, within CCNA_00653at 705.408 kb on - strand, within CCNA_00653at 705.408 kb on - strand, within CCNA_00653at 705.408 kb on - strand, within CCNA_00653at 705.417 kb on + strand, within CCNA_00653at 705.465 kb on - strand, within CCNA_00653at 705.475 kb on - strand, within CCNA_00653at 705.475 kb on - strand, within CCNA_00653at 705.477 kb on + strand, within CCNA_00653at 705.492 kb on + strand, within CCNA_00653at 705.500 kb on - strand, within CCNA_00653at 705.510 kb on + strand, within CCNA_00653at 705.510 kb on + strand, within CCNA_00653at 705.511 kb on - strand, within CCNA_00653at 705.521 kb on + strand, within CCNA_00653at 705.541 kb on - strand, within CCNA_00653at 705.562 kb on + strand, within CCNA_00653at 705.585 kb on + strand, within CCNA_00653

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.03 mg/ml
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703,243 - CCNA_00651 0.59 -0.1
703,243 - CCNA_00651 0.59 -0.6
703,243 - CCNA_00651 0.59 -0.3
703,261 + CCNA_00651 0.60 +1.9
703,269 - CCNA_00651 0.60 -2.0
703,334 - CCNA_00651 0.63 +0.1
703,341 - CCNA_00651 0.63 -0.3
703,341 - CCNA_00651 0.63 -1.0
703,341 - CCNA_00651 0.63 -0.8
703,351 + CCNA_00651 0.64 -0.8
703,386 - CCNA_00651 0.65 +1.9
703,386 - CCNA_00651 0.65 +0.7
703,386 - CCNA_00651 0.65 -0.6
703,388 + CCNA_00651 0.65 +1.5
703,388 + CCNA_00651 0.65 -2.1
703,390 + CCNA_00651 0.65 +0.7
703,390 + CCNA_00651 0.65 -0.8
703,396 - CCNA_00651 0.66 -2.4
703,442 + CCNA_00651 0.67 -0.3
703,442 + CCNA_00651 0.67 -0.8
703,477 + CCNA_00651 0.69 -1.1
703,503 + CCNA_00651 0.70 +0.4
703,511 - CCNA_00651 0.70 -1.6
703,517 - CCNA_00651 0.71 -0.1
703,526 + CCNA_00651 0.71 +0.2
703,555 + CCNA_00651 0.72 -0.6
703,563 - CCNA_00651 0.72 -1.3
703,568 - CCNA_00651 0.73 -1.6
703,592 - CCNA_00651 0.74 -0.4
703,654 - CCNA_00651 0.76 +0.8
703,659 - CCNA_00651 0.76 -0.9
703,671 + CCNA_00651 0.77 +0.4
703,678 + CCNA_00651 0.77 -1.3
703,678 + CCNA_00651 0.77 -1.4
703,683 + CCNA_00651 0.77 +0.1
703,689 + CCNA_00651 0.77 -1.6
703,691 + CCNA_00651 0.78 +1.4
703,695 + CCNA_00651 0.78 -0.2
703,704 - CCNA_00651 0.78 -0.6
703,708 + CCNA_00651 0.78 +0.0
703,708 + CCNA_00651 0.78 -1.0
703,709 - CCNA_00651 0.78 -0.3
703,716 - CCNA_00651 0.79 +0.6
703,721 - CCNA_00651 0.79 -2.2
703,755 - CCNA_00651 0.80 -0.3
703,755 - CCNA_00651 0.80 -1.9
703,756 - CCNA_00651 0.80 -0.5
703,756 - CCNA_00651 0.80 +1.3
703,757 + CCNA_00651 0.80 -0.0
703,799 + CCNA_00651 0.82 -1.9
703,814 + CCNA_00651 0.83 -1.9
703,815 + CCNA_00651 0.83 -0.9
703,817 - CCNA_00651 0.83 +0.9
703,817 - CCNA_00651 0.83 +1.1
703,822 - CCNA_00651 0.83 +0.8
703,836 - CCNA_00651 0.83 -0.2
703,845 + CCNA_00651 0.84 -2.2
703,848 - CCNA_00651 0.84 +1.9
703,850 + CCNA_00651 0.84 -0.6
703,858 - CCNA_00651 0.84 +1.5
703,863 - CCNA_00651 0.85 +0.8
703,889 - CCNA_00651 0.86 -0.6
703,935 - CCNA_00651 0.87 -0.9
703,959 - CCNA_00651 0.88 -0.5
703,974 + CCNA_00651 0.89 +0.6
703,984 + CCNA_00651 0.89 +2.5
703,991 - CCNA_00651 0.90 -0.6
703,991 - CCNA_00651 0.90 -0.2
703,992 - CCNA_00651 0.90 -0.2
704,010 + -1.6
704,010 + -0.0
704,015 + -0.6
704,015 + +0.4
704,015 + -1.5
704,018 - -1.7
704,020 + +1.9
704,023 - +0.3
704,023 - -0.7
704,023 - +0.9
704,023 - -1.9
704,023 - +0.3
704,030 + +0.2
704,068 + +0.1
704,076 - +1.3
704,109 + -0.4
704,117 - -1.3
704,119 + +2.5
704,119 + +2.2
704,128 + +0.3
704,229 + +0.3
704,277 - CCNA_00652 0.10 +0.8
704,319 - CCNA_00652 0.23 -1.0
704,321 + CCNA_00652 0.23 -1.5
704,356 - CCNA_00652 0.33 -1.3
704,427 + CCNA_00652 0.54 -1.8
704,427 + CCNA_00652 0.54 +0.3
704,427 + CCNA_00652 0.54 -0.7
704,429 - CCNA_00652 0.54 -1.8
704,435 - CCNA_00652 0.56 -1.5
704,480 - CCNA_00652 0.69 -0.8
704,507 + CCNA_00652 0.77 -0.7
704,508 + CCNA_00652 0.77 -1.2
704,508 + CCNA_00652 0.77 +0.4
704,515 - CCNA_00652 0.79 -0.5
704,515 - CCNA_00652 0.79 -2.4
704,516 - CCNA_00652 0.80 -2.7
704,525 + CCNA_00652 0.82 +1.9
704,559 - -0.6
704,569 - -0.5
704,639 - -0.4
704,652 + +0.3
704,662 + +3.5
704,759 - -0.0
704,759 - +0.6
704,797 + -0.5
704,799 + -2.0
704,817 + +0.6
704,818 + -2.0
704,877 + CCNA_00653 0.11 +0.8
704,877 + CCNA_00653 0.11 +0.5
704,877 + CCNA_00653 0.11 -1.5
704,877 + CCNA_00653 0.11 +0.1
704,877 + CCNA_00653 0.11 +1.9
704,896 + CCNA_00653 0.12 -1.4
704,913 + CCNA_00653 0.12 +1.8
704,913 + CCNA_00653 0.12 -1.1
704,920 - CCNA_00653 0.12 -1.7
704,927 + CCNA_00653 0.13 +0.8
704,956 - CCNA_00653 0.14 +0.3
704,963 - CCNA_00653 0.14 -1.5
704,996 + CCNA_00653 0.15 +1.4
705,004 - CCNA_00653 0.16 -0.8
705,008 + CCNA_00653 0.16 +2.9
705,012 - CCNA_00653 0.16 -1.6
705,058 + CCNA_00653 0.18 -0.5
705,067 + CCNA_00653 0.18 +1.1
705,080 - CCNA_00653 0.18 -0.2
705,085 - CCNA_00653 0.19 +0.6
705,085 - CCNA_00653 0.19 -1.2
705,099 + CCNA_00653 0.19 -1.8
705,101 + CCNA_00653 0.19 +0.1
705,111 + CCNA_00653 0.20 -0.2
705,111 + CCNA_00653 0.20 -0.8
705,119 - CCNA_00653 0.20 -1.4
705,119 - CCNA_00653 0.20 +0.8
705,121 + CCNA_00653 0.20 +1.7
705,124 - CCNA_00653 0.20 -1.5
705,129 - CCNA_00653 0.20 +0.1
705,211 + CCNA_00653 0.23 -2.3
705,211 + CCNA_00653 0.23 -2.0
705,230 - CCNA_00653 0.24 -0.9
705,259 + CCNA_00653 0.25 +0.5
705,284 - CCNA_00653 0.26 -1.0
705,331 + CCNA_00653 0.28 -0.2
705,331 - CCNA_00653 0.28 +1.1
705,352 - CCNA_00653 0.29 +0.3
705,399 + CCNA_00653 0.30 -1.0
705,399 + CCNA_00653 0.30 -1.2
705,399 + CCNA_00653 0.30 +0.3
705,407 - CCNA_00653 0.31 +1.6
705,408 - CCNA_00653 0.31 +1.1
705,408 - CCNA_00653 0.31 +0.6
705,408 - CCNA_00653 0.31 -1.5
705,417 + CCNA_00653 0.31 -0.2
705,465 - CCNA_00653 0.33 +0.4
705,475 - CCNA_00653 0.33 -0.7
705,475 - CCNA_00653 0.33 -1.2
705,477 + CCNA_00653 0.33 -1.0
705,492 + CCNA_00653 0.34 -0.7
705,500 - CCNA_00653 0.34 -0.0
705,510 + CCNA_00653 0.34 -0.1
705,510 + CCNA_00653 0.34 +0.2
705,511 - CCNA_00653 0.35 +0.9
705,521 + CCNA_00653 0.35 +0.2
705,541 - CCNA_00653 0.36 -1.5
705,562 + CCNA_00653 0.36 +0.8
705,585 + CCNA_00653 0.37 +0.1

Or see this region's nucleotide sequence