Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00205

Experiment: PYE with Nalidixic 0.03 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00204 and CCNA_00205 are separated by 3 nucleotidesCCNA_00205 and CCNA_03916 overlap by 1 nucleotidesCCNA_03916 and CCNA_00206 overlap by 155 nucleotidesCCNA_00206 and CCNA_00207 overlap by 1 nucleotides CCNA_00204: CCNA_00204 - glutathione-regulated potassium-efflux system protein kefB, at 218,336 to 220,237 _00204 CCNA_00205: CCNA_00205 - NAD(P)H-quinone reductase, at 220,241 to 220,822 _00205 CCNA_03916: CCNA_03916 - hypothetical protein, at 220,822 to 221,085 _03916 CCNA_00206: CCNA_00206 - succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A, at 220,931 to 221,641 _00206 CCNA_00207: CCNA_00207 - succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B, at 221,641 to 222,282 _00207 Position (kb) 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 219.254 kb on - strand, within CCNA_00204at 219.284 kb on + strand, within CCNA_00204at 219.284 kb on - strand, within CCNA_00204at 219.292 kb on + strand, within CCNA_00204at 219.300 kb on + strand, within CCNA_00204at 219.312 kb on - strand, within CCNA_00204at 219.312 kb on - strand, within CCNA_00204at 219.312 kb on - strand, within CCNA_00204at 219.320 kb on + strand, within CCNA_00204at 219.320 kb on + strand, within CCNA_00204at 219.320 kb on + strand, within CCNA_00204at 219.327 kb on - strand, within CCNA_00204at 219.328 kb on - strand, within CCNA_00204at 219.328 kb on - strand, within CCNA_00204at 219.328 kb on - strand, within CCNA_00204at 219.328 kb on - strand, within CCNA_00204at 219.328 kb on - strand, within CCNA_00204at 219.449 kb on - strand, within CCNA_00204at 219.451 kb on + strand, within CCNA_00204at 219.459 kb on - strand, within CCNA_00204at 219.464 kb on - strand, within CCNA_00204at 219.467 kb on + strand, within CCNA_00204at 219.470 kb on - strand, within CCNA_00204at 219.483 kb on + strand, within CCNA_00204at 219.506 kb on - strand, within CCNA_00204at 219.515 kb on - strand, within CCNA_00204at 219.527 kb on + strand, within CCNA_00204at 219.540 kb on - strand, within CCNA_00204at 219.554 kb on - strand, within CCNA_00204at 219.612 kb on + strand, within CCNA_00204at 219.650 kb on + strand, within CCNA_00204at 219.658 kb on - strand, within CCNA_00204at 219.658 kb on - strand, within CCNA_00204at 219.658 kb on - strand, within CCNA_00204at 219.670 kb on - strand, within CCNA_00204at 219.704 kb on - strand, within CCNA_00204at 219.740 kb on + strand, within CCNA_00204at 219.773 kb on + strand, within CCNA_00204at 219.776 kb on - strand, within CCNA_00204at 219.799 kb on - strand, within CCNA_00204at 219.820 kb on + strand, within CCNA_00204at 219.820 kb on + strand, within CCNA_00204at 219.820 kb on + strand, within CCNA_00204at 219.820 kb on + strand, within CCNA_00204at 219.822 kb on - strand, within CCNA_00204at 219.822 kb on - strand, within CCNA_00204at 219.822 kb on - strand, within CCNA_00204at 219.828 kb on - strand, within CCNA_00204at 219.828 kb on - strand, within CCNA_00204at 219.828 kb on - strand, within CCNA_00204at 219.829 kb on - strand, within CCNA_00204at 219.829 kb on - strand, within CCNA_00204at 219.830 kb on - strand, within CCNA_00204at 219.835 kb on + strand, within CCNA_00204at 219.869 kb on - strand, within CCNA_00204at 219.891 kb on - strand, within CCNA_00204at 219.903 kb on + strand, within CCNA_00204at 219.911 kb on - strand, within CCNA_00204at 219.913 kb on + strand, within CCNA_00204at 219.913 kb on + strand, within CCNA_00204at 219.916 kb on - strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.944 kb on - strand, within CCNA_00204at 219.946 kb on + strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.954 kb on - strand, within CCNA_00204at 219.959 kb on + strand, within CCNA_00204at 219.959 kb on - strand, within CCNA_00204at 219.961 kb on + strand, within CCNA_00204at 219.969 kb on - strand, within CCNA_00204at 220.001 kb on + strand, within CCNA_00204at 220.008 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.118 kb on + strandat 220.129 kb on - strandat 220.142 kb on + strandat 220.142 kb on + strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.155 kb on - strandat 220.155 kb on - strandat 220.155 kb on - strandat 220.161 kb on - strandat 220.203 kb on + strandat 220.203 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.270 kb on - strandat 220.291 kb on + strandat 220.304 kb on - strand, within CCNA_00205at 220.319 kb on + strand, within CCNA_00205at 220.319 kb on + strand, within CCNA_00205at 220.320 kb on + strand, within CCNA_00205at 220.320 kb on + strand, within CCNA_00205at 220.328 kb on - strand, within CCNA_00205at 220.339 kb on + strand, within CCNA_00205at 220.395 kb on - strand, within CCNA_00205at 220.395 kb on - strand, within CCNA_00205at 220.408 kb on - strand, within CCNA_00205at 220.416 kb on - strand, within CCNA_00205at 220.446 kb on + strand, within CCNA_00205at 220.454 kb on - strand, within CCNA_00205at 220.483 kb on + strand, within CCNA_00205at 220.493 kb on + strand, within CCNA_00205at 220.493 kb on + strand, within CCNA_00205at 220.493 kb on + strand, within CCNA_00205at 220.493 kb on + strand, within CCNA_00205at 220.501 kb on - strand, within CCNA_00205at 220.501 kb on - strand, within CCNA_00205at 220.501 kb on - strand, within CCNA_00205at 220.523 kb on - strand, within CCNA_00205at 220.533 kb on + strand, within CCNA_00205at 220.541 kb on - strand, within CCNA_00205at 220.541 kb on - strand, within CCNA_00205at 220.546 kb on - strand, within CCNA_00205at 220.546 kb on - strand, within CCNA_00205at 220.546 kb on - strand, within CCNA_00205at 220.551 kb on - strand, within CCNA_00205at 220.553 kb on + strand, within CCNA_00205at 220.562 kb on - strand, within CCNA_00205at 220.562 kb on - strand, within CCNA_00205at 220.595 kb on + strand, within CCNA_00205at 220.595 kb on + strand, within CCNA_00205at 220.688 kb on - strand, within CCNA_00205at 220.689 kb on - strand, within CCNA_00205at 220.713 kb on + strand, within CCNA_00205at 220.713 kb on + strand, within CCNA_00205at 220.760 kb on + strand, within CCNA_00205at 220.763 kb on - strand, within CCNA_00205at 220.768 kb on - strandat 220.777 kb on + strandat 220.777 kb on + strandat 220.787 kb on + strandat 220.806 kb on + strandat 220.806 kb on + strandat 220.814 kb on - strandat 220.814 kb on - strandat 220.819 kb on + strandat 220.903 kb on - strand, within CCNA_03916at 220.927 kb on + strand, within CCNA_03916at 220.935 kb on - strandat 220.935 kb on - strandat 220.958 kb on + strandat 220.958 kb on + strandat 221.018 kb on - strandat 221.035 kb on - strandat 221.043 kb on - strandat 221.059 kb on + strandat 221.074 kb on + strandat 221.202 kb on - strand, within CCNA_00206at 221.202 kb on - strand, within CCNA_00206at 221.277 kb on + strand, within CCNA_00206at 221.300 kb on + strand, within CCNA_00206at 221.327 kb on + strand, within CCNA_00206at 221.331 kb on - strand, within CCNA_00206at 221.353 kb on + strand, within CCNA_00206at 221.387 kb on - strand, within CCNA_00206at 221.409 kb on - strand, within CCNA_00206at 221.436 kb on + strand, within CCNA_00206at 221.480 kb on + strand, within CCNA_00206at 221.558 kb on - strand, within CCNA_00206at 221.575 kb on + strandat 221.575 kb on + strandat 221.575 kb on + strandat 221.644 kb on + strandat 221.683 kb on - strandat 221.750 kb on - strand, within CCNA_00207at 221.754 kb on + strand, within CCNA_00207at 221.755 kb on - strand, within CCNA_00207

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.03 mg/ml
remove
219,254 - CCNA_00204 0.48 +0.4
219,284 + CCNA_00204 0.50 +1.0
219,284 - CCNA_00204 0.50 +0.8
219,292 + CCNA_00204 0.50 +1.0
219,300 + CCNA_00204 0.51 -0.7
219,312 - CCNA_00204 0.51 +0.1
219,312 - CCNA_00204 0.51 +1.1
219,312 - CCNA_00204 0.51 +1.0
219,320 + CCNA_00204 0.52 -0.2
219,320 + CCNA_00204 0.52 -0.7
219,320 + CCNA_00204 0.52 -0.6
219,327 - CCNA_00204 0.52 -1.0
219,328 - CCNA_00204 0.52 +0.6
219,328 - CCNA_00204 0.52 -1.0
219,328 - CCNA_00204 0.52 -0.7
219,328 - CCNA_00204 0.52 +0.3
219,328 - CCNA_00204 0.52 -0.2
219,449 - CCNA_00204 0.59 -0.6
219,451 + CCNA_00204 0.59 +0.5
219,459 - CCNA_00204 0.59 -1.1
219,464 - CCNA_00204 0.59 -0.1
219,467 + CCNA_00204 0.59 -0.9
219,470 - CCNA_00204 0.60 -0.3
219,483 + CCNA_00204 0.60 -0.4
219,506 - CCNA_00204 0.62 -0.1
219,515 - CCNA_00204 0.62 +0.7
219,527 + CCNA_00204 0.63 -0.7
219,540 - CCNA_00204 0.63 -0.6
219,554 - CCNA_00204 0.64 -1.5
219,612 + CCNA_00204 0.67 -0.5
219,650 + CCNA_00204 0.69 -0.4
219,658 - CCNA_00204 0.70 +2.3
219,658 - CCNA_00204 0.70 +0.1
219,658 - CCNA_00204 0.70 +0.4
219,670 - CCNA_00204 0.70 +0.5
219,704 - CCNA_00204 0.72 -0.2
219,740 + CCNA_00204 0.74 -2.6
219,773 + CCNA_00204 0.76 -1.8
219,776 - CCNA_00204 0.76 +0.4
219,799 - CCNA_00204 0.77 -2.2
219,820 + CCNA_00204 0.78 +2.0
219,820 + CCNA_00204 0.78 -1.2
219,820 + CCNA_00204 0.78 -1.0
219,820 + CCNA_00204 0.78 -0.3
219,822 - CCNA_00204 0.78 -2.4
219,822 - CCNA_00204 0.78 +0.2
219,822 - CCNA_00204 0.78 -0.1
219,828 - CCNA_00204 0.78 +1.0
219,828 - CCNA_00204 0.78 +0.8
219,828 - CCNA_00204 0.78 +0.1
219,829 - CCNA_00204 0.78 +0.9
219,829 - CCNA_00204 0.78 +0.3
219,830 - CCNA_00204 0.79 +1.0
219,835 + CCNA_00204 0.79 -1.6
219,869 - CCNA_00204 0.81 -0.1
219,891 - CCNA_00204 0.82 -0.0
219,903 + CCNA_00204 0.82 +0.1
219,911 - CCNA_00204 0.83 +1.2
219,913 + CCNA_00204 0.83 +0.1
219,913 + CCNA_00204 0.83 -0.1
219,916 - CCNA_00204 0.83 +0.6
219,941 + CCNA_00204 0.84 -0.8
219,941 + CCNA_00204 0.84 -1.2
219,941 + CCNA_00204 0.84 -0.0
219,944 - CCNA_00204 0.85 +0.5
219,946 + CCNA_00204 0.85 -0.9
219,949 - CCNA_00204 0.85 +0.7
219,949 - CCNA_00204 0.85 -1.7
219,949 - CCNA_00204 0.85 -0.2
219,949 - CCNA_00204 0.85 -1.2
219,949 - CCNA_00204 0.85 -0.5
219,949 - CCNA_00204 0.85 +0.5
219,949 - CCNA_00204 0.85 -0.4
219,949 - CCNA_00204 0.85 -0.3
219,949 - CCNA_00204 0.85 +0.4
219,954 - CCNA_00204 0.85 -2.0
219,959 + CCNA_00204 0.85 -1.7
219,959 - CCNA_00204 0.85 -0.2
219,961 + CCNA_00204 0.85 -0.7
219,969 - CCNA_00204 0.86 -0.5
220,001 + CCNA_00204 0.88 +0.2
220,008 + CCNA_00204 0.88 -2.3
220,021 + CCNA_00204 0.89 -0.6
220,021 + CCNA_00204 0.89 +0.1
220,021 + CCNA_00204 0.89 -1.2
220,021 + CCNA_00204 0.89 +2.1
220,021 + CCNA_00204 0.89 -0.7
220,021 - CCNA_00204 0.89 +0.1
220,029 - CCNA_00204 0.89 -0.0
220,029 - CCNA_00204 0.89 +1.1
220,029 - CCNA_00204 0.89 -0.0
220,029 - CCNA_00204 0.89 +0.3
220,029 - CCNA_00204 0.89 -0.2
220,029 - CCNA_00204 0.89 +0.4
220,029 - CCNA_00204 0.89 -0.5
220,029 - CCNA_00204 0.89 -0.3
220,029 - CCNA_00204 0.89 +0.6
220,029 - CCNA_00204 0.89 +1.6
220,029 - CCNA_00204 0.89 +0.0
220,029 - CCNA_00204 0.89 -1.3
220,029 - CCNA_00204 0.89 -0.3
220,029 - CCNA_00204 0.89 +0.9
220,118 + -0.9
220,129 - -0.9
220,142 + +2.7
220,142 + -1.1
220,150 - +0.8
220,150 - +0.9
220,150 - -0.7
220,150 - +0.7
220,150 - -0.9
220,155 - +0.2
220,155 - -1.7
220,155 - -1.6
220,161 - -0.7
220,203 + +0.6
220,203 + -0.1
220,239 + -1.2
220,239 + -0.6
220,247 - -0.1
220,247 - -0.1
220,247 - -0.6
220,247 - -1.3
220,247 - -0.3
220,247 - +0.5
220,270 - -0.8
220,291 + -2.4
220,304 - CCNA_00205 0.11 +1.0
220,319 + CCNA_00205 0.13 +0.3
220,319 + CCNA_00205 0.13 -0.8
220,320 + CCNA_00205 0.14 -1.2
220,320 + CCNA_00205 0.14 -1.8
220,328 - CCNA_00205 0.15 -1.2
220,339 + CCNA_00205 0.17 -1.5
220,395 - CCNA_00205 0.26 -0.2
220,395 - CCNA_00205 0.26 +0.8
220,408 - CCNA_00205 0.29 -0.7
220,416 - CCNA_00205 0.30 +0.6
220,446 + CCNA_00205 0.35 -0.2
220,454 - CCNA_00205 0.37 -0.8
220,483 + CCNA_00205 0.42 +0.3
220,493 + CCNA_00205 0.43 -1.3
220,493 + CCNA_00205 0.43 -1.2
220,493 + CCNA_00205 0.43 -1.0
220,493 + CCNA_00205 0.43 -0.6
220,501 - CCNA_00205 0.45 -0.1
220,501 - CCNA_00205 0.45 -0.8
220,501 - CCNA_00205 0.45 -1.2
220,523 - CCNA_00205 0.48 -0.6
220,533 + CCNA_00205 0.50 -1.4
220,541 - CCNA_00205 0.52 -1.5
220,541 - CCNA_00205 0.52 +1.4
220,546 - CCNA_00205 0.52 -0.1
220,546 - CCNA_00205 0.52 +1.9
220,546 - CCNA_00205 0.52 -1.1
220,551 - CCNA_00205 0.53 +0.2
220,553 + CCNA_00205 0.54 +0.6
220,562 - CCNA_00205 0.55 -0.8
220,562 - CCNA_00205 0.55 +2.1
220,595 + CCNA_00205 0.61 -0.4
220,595 + CCNA_00205 0.61 -3.3
220,688 - CCNA_00205 0.77 +0.8
220,689 - CCNA_00205 0.77 -0.7
220,713 + CCNA_00205 0.81 +0.9
220,713 + CCNA_00205 0.81 -0.0
220,760 + CCNA_00205 0.89 +0.3
220,763 - CCNA_00205 0.90 -0.9
220,768 - +0.2
220,777 + -0.4
220,777 + -1.8
220,787 + +0.5
220,806 + -1.5
220,806 + +0.4
220,814 - -0.6
220,814 - -0.1
220,819 + -2.3
220,903 - CCNA_03916 0.31 -0.2
220,927 + CCNA_03916 0.40 -1.0
220,935 - -0.4
220,935 - +1.0
220,958 + -0.8
220,958 + -0.7
221,018 - +0.4
221,035 - -1.9
221,043 - -0.5
221,059 + +0.8
221,074 + +1.1
221,202 - CCNA_00206 0.38 -0.4
221,202 - CCNA_00206 0.38 -1.1
221,277 + CCNA_00206 0.49 +1.3
221,300 + CCNA_00206 0.52 +1.2
221,327 + CCNA_00206 0.56 +1.1
221,331 - CCNA_00206 0.56 -1.7
221,353 + CCNA_00206 0.59 +0.9
221,387 - CCNA_00206 0.64 -0.9
221,409 - CCNA_00206 0.67 +0.3
221,436 + CCNA_00206 0.71 -0.2
221,480 + CCNA_00206 0.77 +1.4
221,558 - CCNA_00206 0.88 +1.1
221,575 + +0.1
221,575 + +0.5
221,575 + +0.7
221,644 + +1.6
221,683 - +0.8
221,750 - CCNA_00207 0.17 -1.4
221,754 + CCNA_00207 0.18 +2.4
221,755 - CCNA_00207 0.18 -0.8

Or see this region's nucleotide sequence