Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23255

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23250 and BPHYT_RS23255 are separated by 105 nucleotidesBPHYT_RS23255 and BPHYT_RS23260 are separated by 306 nucleotides BPHYT_RS23250: BPHYT_RS23250 - hypothetical protein, at 780,351 to 781,172 _RS23250 BPHYT_RS23255: BPHYT_RS23255 - TetR family transcriptional regulator, at 781,278 to 782,027 _RS23255 BPHYT_RS23260: BPHYT_RS23260 - isovaleryl-CoA dehydrogenase, at 782,334 to 783,515 _RS23260 Position (kb) 781 782 783Strain fitness (log2 ratio) -1 0 1 2at 780.421 kb on + strandat 780.422 kb on - strandat 780.585 kb on + strand, within BPHYT_RS23250at 780.711 kb on + strand, within BPHYT_RS23250at 781.209 kb on - strandat 781.246 kb on + strandat 781.357 kb on - strand, within BPHYT_RS23255at 781.417 kb on - strand, within BPHYT_RS23255at 782.028 kb on - strandat 782.121 kb on + strandat 782.162 kb on + strandat 782.547 kb on + strand, within BPHYT_RS23260at 782.680 kb on - strand, within BPHYT_RS23260at 782.680 kb on - strand, within BPHYT_RS23260at 782.793 kb on + strand, within BPHYT_RS23260at 782.794 kb on - strand, within BPHYT_RS23260

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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780,421 + -0.4
780,422 - -0.9
780,585 + BPHYT_RS23250 0.28 +0.8
780,711 + BPHYT_RS23250 0.44 +0.3
781,209 - +2.3
781,246 + +0.4
781,357 - BPHYT_RS23255 0.11 -0.9
781,417 - BPHYT_RS23255 0.19 -1.7
782,028 - -0.6
782,121 + -1.6
782,162 + -0.3
782,547 + BPHYT_RS23260 0.18 +0.5
782,680 - BPHYT_RS23260 0.29 -1.0
782,680 - BPHYT_RS23260 0.29 +0.7
782,793 + BPHYT_RS23260 0.39 +0.6
782,794 - BPHYT_RS23260 0.39 +0.3

Or see this region's nucleotide sequence