Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23175

Experiment: Putrescine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS23170 and BPHYT_RS23175 are separated by 115 nucleotidesBPHYT_RS23175 and BPHYT_RS23180 are separated by 21 nucleotidesBPHYT_RS23180 and BPHYT_RS23185 are separated by 41 nucleotides BPHYT_RS23170: BPHYT_RS23170 - XRE family transcriptional regulator, at 765,242 to 765,793 _RS23170 BPHYT_RS23175: BPHYT_RS23175 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase, at 765,909 to 767,402 _RS23175 BPHYT_RS23180: BPHYT_RS23180 - hypothetical protein, at 767,424 to 767,609 _RS23180 BPHYT_RS23185: BPHYT_RS23185 - MFS transporter, at 767,651 to 768,847 _RS23185 Position (kb) 765 766 767 768Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 764.979 kb on - strandat 765.515 kb on + strand, within BPHYT_RS23170at 765.699 kb on - strand, within BPHYT_RS23170at 766.668 kb on + strand, within BPHYT_RS23175at 766.892 kb on + strand, within BPHYT_RS23175at 767.365 kb on - strandat 767.756 kb on - strandat 767.884 kb on - strand, within BPHYT_RS23185at 768.197 kb on + strand, within BPHYT_RS23185

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
remove
764,979 - -4.1
765,515 + BPHYT_RS23170 0.49 -0.4
765,699 - BPHYT_RS23170 0.83 -2.1
766,668 + BPHYT_RS23175 0.51 -2.2
766,892 + BPHYT_RS23175 0.66 -1.4
767,365 - -3.9
767,756 - -1.5
767,884 - BPHYT_RS23185 0.19 +0.1
768,197 + BPHYT_RS23185 0.46 -0.8

Or see this region's nucleotide sequence