Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06275

Experiment: Putrescine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS06265 and BPHYT_RS06270 are separated by 36 nucleotidesBPHYT_RS06270 and BPHYT_RS06275 are separated by 129 nucleotidesBPHYT_RS06275 and BPHYT_RS06280 are separated by 265 nucleotidesBPHYT_RS06280 and BPHYT_RS06285 are separated by 178 nucleotides BPHYT_RS06265: BPHYT_RS06265 - 3-demethylubiquinone-9 3-methyltransferase, at 1,429,984 to 1,430,457 _RS06265 BPHYT_RS06270: BPHYT_RS06270 - glyoxalase, at 1,430,494 to 1,430,961 _RS06270 BPHYT_RS06275: BPHYT_RS06275 - hydrolase, at 1,431,091 to 1,432,686 _RS06275 BPHYT_RS06280: BPHYT_RS06280 - transporter, at 1,432,952 to 1,433,377 _RS06280 BPHYT_RS06285: BPHYT_RS06285 - diguanylate cyclase, at 1,433,556 to 1,434,056 _RS06285 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1430.351 kb on + strand, within BPHYT_RS06265at 1430.351 kb on + strand, within BPHYT_RS06265at 1430.396 kb on + strand, within BPHYT_RS06265at 1430.397 kb on - strand, within BPHYT_RS06265at 1430.571 kb on + strand, within BPHYT_RS06270at 1430.601 kb on - strand, within BPHYT_RS06270at 1430.693 kb on + strand, within BPHYT_RS06270at 1430.694 kb on - strand, within BPHYT_RS06270at 1430.696 kb on + strand, within BPHYT_RS06270at 1431.040 kb on + strandat 1431.283 kb on + strand, within BPHYT_RS06275at 1431.283 kb on + strand, within BPHYT_RS06275at 1431.284 kb on - strand, within BPHYT_RS06275at 1431.338 kb on + strand, within BPHYT_RS06275at 1431.338 kb on + strand, within BPHYT_RS06275at 1431.362 kb on + strand, within BPHYT_RS06275at 1431.401 kb on + strand, within BPHYT_RS06275at 1431.700 kb on + strand, within BPHYT_RS06275at 1431.906 kb on + strand, within BPHYT_RS06275at 1431.906 kb on + strand, within BPHYT_RS06275at 1431.906 kb on + strand, within BPHYT_RS06275at 1431.907 kb on - strand, within BPHYT_RS06275at 1431.980 kb on + strand, within BPHYT_RS06275at 1431.980 kb on + strand, within BPHYT_RS06275at 1431.981 kb on - strand, within BPHYT_RS06275at 1432.016 kb on + strand, within BPHYT_RS06275at 1432.016 kb on + strand, within BPHYT_RS06275at 1432.017 kb on - strand, within BPHYT_RS06275at 1432.095 kb on - strand, within BPHYT_RS06275at 1432.095 kb on - strand, within BPHYT_RS06275at 1432.260 kb on - strand, within BPHYT_RS06275at 1432.368 kb on - strand, within BPHYT_RS06275at 1432.520 kb on + strand, within BPHYT_RS06275at 1432.521 kb on - strand, within BPHYT_RS06275at 1432.781 kb on - strandat 1432.781 kb on - strandat 1432.787 kb on + strandat 1433.241 kb on + strand, within BPHYT_RS06280at 1433.375 kb on + strandat 1433.375 kb on + strandat 1433.376 kb on - strandat 1433.386 kb on + strandat 1433.387 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
remove
1,430,351 + BPHYT_RS06265 0.77 -0.7
1,430,351 + BPHYT_RS06265 0.77 +0.1
1,430,396 + BPHYT_RS06265 0.87 -2.0
1,430,397 - BPHYT_RS06265 0.87 +0.6
1,430,571 + BPHYT_RS06270 0.16 +0.3
1,430,601 - BPHYT_RS06270 0.23 -0.3
1,430,693 + BPHYT_RS06270 0.43 -0.3
1,430,694 - BPHYT_RS06270 0.43 -0.4
1,430,696 + BPHYT_RS06270 0.43 -0.5
1,431,040 + +0.0
1,431,283 + BPHYT_RS06275 0.12 +0.0
1,431,283 + BPHYT_RS06275 0.12 +0.3
1,431,284 - BPHYT_RS06275 0.12 -0.9
1,431,338 + BPHYT_RS06275 0.15 -3.1
1,431,338 + BPHYT_RS06275 0.15 +0.5
1,431,362 + BPHYT_RS06275 0.17 +0.1
1,431,401 + BPHYT_RS06275 0.19 +2.1
1,431,700 + BPHYT_RS06275 0.38 -0.1
1,431,906 + BPHYT_RS06275 0.51 -0.5
1,431,906 + BPHYT_RS06275 0.51 -2.1
1,431,906 + BPHYT_RS06275 0.51 -0.0
1,431,907 - BPHYT_RS06275 0.51 -0.5
1,431,980 + BPHYT_RS06275 0.56 -0.0
1,431,980 + BPHYT_RS06275 0.56 -0.2
1,431,981 - BPHYT_RS06275 0.56 -0.3
1,432,016 + BPHYT_RS06275 0.58 -0.2
1,432,016 + BPHYT_RS06275 0.58 +0.2
1,432,017 - BPHYT_RS06275 0.58 -0.8
1,432,095 - BPHYT_RS06275 0.63 -0.8
1,432,095 - BPHYT_RS06275 0.63 +0.2
1,432,260 - BPHYT_RS06275 0.73 +1.6
1,432,368 - BPHYT_RS06275 0.80 -0.3
1,432,520 + BPHYT_RS06275 0.90 -0.7
1,432,521 - BPHYT_RS06275 0.90 -0.4
1,432,781 - -0.6
1,432,781 - +0.0
1,432,787 + +0.8
1,433,241 + BPHYT_RS06280 0.68 +2.3
1,433,375 + -0.1
1,433,375 + +0.1
1,433,376 - -0.0
1,433,386 + -0.5
1,433,387 - +0.4

Or see this region's nucleotide sequence