Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03745 and BPHYT_RS03750 are separated by 137 nucleotides BPHYT_RS03750 and BPHYT_RS03755 are separated by 10 nucleotides BPHYT_RS03755 and BPHYT_RS03760 are separated by 38 nucleotides BPHYT_RS03760 and BPHYT_RS03765 are separated by 123 nucleotides
BPHYT_RS03745: BPHYT_RS03745 - cleavage protein, at 848,210 to 849,022
_RS03745
BPHYT_RS03750: BPHYT_RS03750 - hypothetical protein, at 849,160 to 849,639
_RS03750
BPHYT_RS03755: BPHYT_RS03755 - pilus assembly protein PilE, at 849,650 to 850,078
_RS03755
BPHYT_RS03760: BPHYT_RS03760 - hypothetical protein, at 850,117 to 850,596
_RS03760
BPHYT_RS03765: BPHYT_RS03765 - membrane protein, at 850,720 to 851,106
_RS03765
Position (kb) 849
850
851 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 848.675 kb on + strand, within BPHYT_RS03745 at 848.718 kb on - strand, within BPHYT_RS03745 at 848.790 kb on - strand, within BPHYT_RS03745 at 848.883 kb on + strand, within BPHYT_RS03745 at 848.884 kb on - strand, within BPHYT_RS03745 at 848.919 kb on - strand at 848.919 kb on - strand, within BPHYT_RS03745 at 849.018 kb on + strand at 849.137 kb on + strand at 849.138 kb on - strand at 849.138 kb on - strand at 849.339 kb on + strand, within BPHYT_RS03750 at 849.518 kb on + strand, within BPHYT_RS03750 at 849.518 kb on + strand, within BPHYT_RS03750 at 849.519 kb on - strand, within BPHYT_RS03750 at 849.519 kb on - strand, within BPHYT_RS03750 at 849.792 kb on - strand, within BPHYT_RS03755 at 849.901 kb on - strand, within BPHYT_RS03755 at 850.011 kb on + strand, within BPHYT_RS03755 at 850.658 kb on - strand at 851.070 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 848,675 + BPHYT_RS03745 0.57 -0.8 848,718 - BPHYT_RS03745 0.62 -0.0 848,790 - BPHYT_RS03745 0.71 -0.5 848,883 + BPHYT_RS03745 0.83 +2.8 848,884 - BPHYT_RS03745 0.83 -0.9 848,919 - +0.8 848,919 - BPHYT_RS03745 0.87 +0.7 849,018 + -0.3 849,137 + +0.3 849,138 - -1.6 849,138 - -0.1 849,339 + BPHYT_RS03750 0.37 -0.2 849,518 + BPHYT_RS03750 0.75 -0.2 849,518 + BPHYT_RS03750 0.75 +1.0 849,519 - BPHYT_RS03750 0.75 +1.2 849,519 - BPHYT_RS03750 0.75 +1.2 849,792 - BPHYT_RS03755 0.33 -1.2 849,901 - BPHYT_RS03755 0.59 -0.8 850,011 + BPHYT_RS03755 0.84 -0.6 850,658 - -0.6 851,070 + -4.9
Or see this region's nucleotide sequence