Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22510 and AZOBR_RS22515 are separated by 79 nucleotides AZOBR_RS22515 and AZOBR_RS22520 are separated by 196 nucleotides AZOBR_RS22520 and AZOBR_RS22525 are separated by 99 nucleotides
AZOBR_RS22510: AZOBR_RS22510 - LysR family transcriptional regulator, at 61,727 to 62,689
_RS22510
AZOBR_RS22515: AZOBR_RS22515 - membrane protein of unknown function, at 62,769 to 63,329
_RS22515
AZOBR_RS22520: AZOBR_RS22520 - hypothetical protein, at 63,526 to 63,918
_RS22520
AZOBR_RS22525: AZOBR_RS22525 - flavin-nucleotide-binding protein, at 64,018 to 64,743
_RS22525
Position (kb) 62
63
64 Strain fitness (log2 ratio) -1
0
1 at 62.276 kb on + strand, within AZOBR_RS22510 at 62.277 kb on - strand, within AZOBR_RS22510 at 62.277 kb on - strand, within AZOBR_RS22510 at 62.465 kb on + strand, within AZOBR_RS22510 at 62.466 kb on - strand, within AZOBR_RS22510 at 62.490 kb on - strand, within AZOBR_RS22510 at 62.549 kb on + strand, within AZOBR_RS22510 at 62.802 kb on + strand at 62.802 kb on + strand at 62.802 kb on + strand at 63.377 kb on + strand at 63.378 kb on - strand at 63.525 kb on + strand at 63.525 kb on + strand at 63.526 kb on - strand at 63.535 kb on - strand at 63.959 kb on - strand at 64.181 kb on + strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.328 kb on + strand, within AZOBR_RS22525 at 64.329 kb on - strand, within AZOBR_RS22525
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 62,276 + AZOBR_RS22510 0.57 +0.2 62,277 - AZOBR_RS22510 0.57 -0.4 62,277 - AZOBR_RS22510 0.57 -0.1 62,465 + AZOBR_RS22510 0.77 -1.1 62,466 - AZOBR_RS22510 0.77 -0.0 62,490 - AZOBR_RS22510 0.79 -0.1 62,549 + AZOBR_RS22510 0.85 -0.0 62,802 + +0.5 62,802 + -0.7 62,802 + +0.3 63,377 + +0.3 63,378 - -0.7 63,525 + +0.4 63,525 + +0.2 63,526 - +0.2 63,535 - +0.2 63,959 - +0.3 64,181 + AZOBR_RS22525 0.22 +0.5 64,182 - AZOBR_RS22525 0.23 -0.7 64,182 - AZOBR_RS22525 0.23 -0.7 64,182 - AZOBR_RS22525 0.23 +1.1 64,182 - AZOBR_RS22525 0.23 +0.5 64,182 - AZOBR_RS22525 0.23 +0.6 64,328 + AZOBR_RS22525 0.43 +1.6 64,329 - AZOBR_RS22525 0.43 +0.7
Or see this region's nucleotide sequence