Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10355

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10355 and AZOBR_RS10360 are separated by 107 nucleotidesAZOBR_RS10360 and AZOBR_RS10365 are separated by 30 nucleotidesAZOBR_RS10365 and AZOBR_RS10370 are separated by 252 nucleotides AZOBR_RS10355: AZOBR_RS10355 - membrane protein, at 2,176,963 to 2,177,427 _RS10355 AZOBR_RS10360: AZOBR_RS10360 - tRNA-Ala, at 2,177,535 to 2,177,610 _RS10360 AZOBR_RS10365: AZOBR_RS10365 - tRNA-Leu, at 2,177,641 to 2,177,727 _RS10365 AZOBR_RS10370: AZOBR_RS10370 - hypothetical protein, at 2,177,980 to 2,180,157 _RS10370 Position (kb) 2176 2177 2178Strain fitness (log2 ratio) -1 0 1at 2176.584 kb on + strandat 2176.584 kb on + strandat 2176.585 kb on - strandat 2177.053 kb on + strand, within AZOBR_RS10355at 2177.317 kb on + strand, within AZOBR_RS10355at 2177.613 kb on + strandat 2177.616 kb on - strandat 2177.616 kb on - strandat 2177.777 kb on + strandat 2177.779 kb on + strandat 2177.865 kb on - strandat 2178.248 kb on + strand, within AZOBR_RS10370at 2178.248 kb on + strand, within AZOBR_RS10370at 2178.248 kb on + strand, within AZOBR_RS10370at 2178.249 kb on - strand, within AZOBR_RS10370at 2178.249 kb on - strand, within AZOBR_RS10370at 2178.249 kb on - strand, within AZOBR_RS10370at 2178.249 kb on - strand, within AZOBR_RS10370at 2178.251 kb on + strand, within AZOBR_RS10370at 2178.251 kb on + strand, within AZOBR_RS10370at 2178.252 kb on - strand, within AZOBR_RS10370

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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2,176,584 + -0.5
2,176,584 + +0.4
2,176,585 - +0.3
2,177,053 + AZOBR_RS10355 0.19 -1.5
2,177,317 + AZOBR_RS10355 0.76 -0.4
2,177,613 + +1.5
2,177,616 - -0.2
2,177,616 - -0.9
2,177,777 + -1.2
2,177,779 + +0.1
2,177,865 - -0.2
2,178,248 + AZOBR_RS10370 0.12 -0.4
2,178,248 + AZOBR_RS10370 0.12 -0.8
2,178,248 + AZOBR_RS10370 0.12 -0.1
2,178,249 - AZOBR_RS10370 0.12 -0.5
2,178,249 - AZOBR_RS10370 0.12 -0.3
2,178,249 - AZOBR_RS10370 0.12 -1.5
2,178,249 - AZOBR_RS10370 0.12 -0.0
2,178,251 + AZOBR_RS10370 0.12 +0.3
2,178,251 + AZOBR_RS10370 0.12 -0.4
2,178,252 - AZOBR_RS10370 0.12 +0.5

Or see this region's nucleotide sequence