Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.652.1

Experiment: Xantho_MME_glucose_casamino

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.650.1 and Xcc-8004.651.1 overlap by 1 nucleotidesXcc-8004.651.1 and Xcc-8004.652.1 are separated by 334 nucleotidesXcc-8004.652.1 and Xcc-8004.653.1 are separated by 67 nucleotidesXcc-8004.653.1 and Xcc-8004.654.1 are separated by 16 nucleotides Xcc-8004.650.1: Xcc-8004.650.1 - FIG01211385: hypothetical protein, at 591,978 to 592,388 Xcc-8004.650.1 Xcc-8004.651.1: Xcc-8004.651.1 - Transmembrane protein, at 592,388 to 592,732 Xcc-8004.651.1 Xcc-8004.652.1: Xcc-8004.652.1 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 593,067 to 594,989 Xcc-8004.652.1 Xcc-8004.653.1: Xcc-8004.653.1 - Transcriptional regulator, LysR family, at 595,057 to 595,959 Xcc-8004.653.1 Xcc-8004.654.1: Xcc-8004.654.1 - MFS permease protein, at 595,976 to 597,250 Xcc-8004.654.1 Position (kb) 593 594 595Strain fitness (log2 ratio) -2 -1 0 1 2at 592.210 kb on + strand, within Xcc-8004.650.1at 592.210 kb on + strand, within Xcc-8004.650.1at 592.211 kb on - strand, within Xcc-8004.650.1at 592.211 kb on - strand, within Xcc-8004.650.1at 592.211 kb on - strand, within Xcc-8004.650.1at 592.211 kb on - strand, within Xcc-8004.650.1at 592.211 kb on - strand, within Xcc-8004.650.1at 592.243 kb on + strand, within Xcc-8004.650.1at 592.243 kb on + strand, within Xcc-8004.650.1at 592.244 kb on - strand, within Xcc-8004.650.1at 592.244 kb on - strand, within Xcc-8004.650.1at 592.313 kb on - strand, within Xcc-8004.650.1at 592.313 kb on - strand, within Xcc-8004.650.1at 592.416 kb on + strandat 592.416 kb on + strandat 592.416 kb on + strandat 592.416 kb on + strandat 592.416 kb on + strandat 592.416 kb on + strandat 592.416 kb on + strandat 592.416 kb on + strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.417 kb on - strandat 592.425 kb on + strand, within Xcc-8004.651.1at 592.425 kb on + strand, within Xcc-8004.651.1at 592.425 kb on + strand, within Xcc-8004.651.1at 592.425 kb on + strand, within Xcc-8004.651.1at 592.425 kb on + strand, within Xcc-8004.651.1at 592.425 kb on + strand, within Xcc-8004.651.1at 592.426 kb on - strand, within Xcc-8004.651.1at 592.426 kb on - strand, within Xcc-8004.651.1at 592.426 kb on - strand, within Xcc-8004.651.1at 593.001 kb on - strandat 593.086 kb on - strandat 593.094 kb on + strandat 593.094 kb on + strandat 593.095 kb on - strandat 593.095 kb on - strandat 593.095 kb on - strandat 593.095 kb on - strandat 593.497 kb on + strand, within Xcc-8004.652.1at 593.497 kb on + strand, within Xcc-8004.652.1at 593.497 kb on + strand, within Xcc-8004.652.1at 593.497 kb on + strand, within Xcc-8004.652.1at 593.497 kb on + strand, within Xcc-8004.652.1at 593.497 kb on + strand, within Xcc-8004.652.1at 593.498 kb on - strand, within Xcc-8004.652.1at 593.498 kb on - strand, within Xcc-8004.652.1at 593.498 kb on - strand, within Xcc-8004.652.1at 593.500 kb on + strand, within Xcc-8004.652.1at 593.500 kb on + strand, within Xcc-8004.652.1at 593.500 kb on + strand, within Xcc-8004.652.1at 593.500 kb on + strand, within Xcc-8004.652.1at 593.500 kb on + strand, within Xcc-8004.652.1at 593.501 kb on - strand, within Xcc-8004.652.1at 593.501 kb on - strand, within Xcc-8004.652.1at 593.501 kb on - strand, within Xcc-8004.652.1at 593.501 kb on - strand, within Xcc-8004.652.1at 593.501 kb on - strand, within Xcc-8004.652.1at 593.501 kb on - strand, within Xcc-8004.652.1at 593.501 kb on - strand, within Xcc-8004.652.1at 593.557 kb on + strand, within Xcc-8004.652.1at 593.558 kb on - strand, within Xcc-8004.652.1at 593.636 kb on - strand, within Xcc-8004.652.1at 593.636 kb on - strand, within Xcc-8004.652.1at 594.055 kb on + strand, within Xcc-8004.652.1at 594.055 kb on + strand, within Xcc-8004.652.1at 594.056 kb on - strand, within Xcc-8004.652.1at 594.056 kb on - strand, within Xcc-8004.652.1at 594.056 kb on - strand, within Xcc-8004.652.1at 594.193 kb on + strand, within Xcc-8004.652.1at 594.193 kb on + strand, within Xcc-8004.652.1at 594.193 kb on + strand, within Xcc-8004.652.1at 594.193 kb on + strand, within Xcc-8004.652.1at 594.193 kb on + strand, within Xcc-8004.652.1at 594.193 kb on + strand, within Xcc-8004.652.1at 594.193 kb on + strand, within Xcc-8004.652.1at 594.194 kb on - strand, within Xcc-8004.652.1at 594.194 kb on - strand, within Xcc-8004.652.1at 594.194 kb on - strand, within Xcc-8004.652.1at 594.194 kb on - strand, within Xcc-8004.652.1at 594.194 kb on - strand, within Xcc-8004.652.1at 594.194 kb on - strand, within Xcc-8004.652.1at 594.194 kb on - strand, within Xcc-8004.652.1at 594.194 kb on - strand, within Xcc-8004.652.1at 594.194 kb on - strand, within Xcc-8004.652.1at 594.229 kb on + strand, within Xcc-8004.652.1at 594.229 kb on + strand, within Xcc-8004.652.1at 594.229 kb on + strand, within Xcc-8004.652.1at 594.229 kb on + strand, within Xcc-8004.652.1at 594.229 kb on + strand, within Xcc-8004.652.1at 594.229 kb on + strand, within Xcc-8004.652.1at 594.230 kb on - strand, within Xcc-8004.652.1at 594.230 kb on - strand, within Xcc-8004.652.1at 594.230 kb on - strand, within Xcc-8004.652.1at 594.230 kb on - strand, within Xcc-8004.652.1at 594.230 kb on - strand, within Xcc-8004.652.1at 594.230 kb on - strand, within Xcc-8004.652.1at 594.230 kb on - strand, within Xcc-8004.652.1at 594.252 kb on + strand, within Xcc-8004.652.1at 594.601 kb on + strand, within Xcc-8004.652.1at 594.796 kb on + strand, within Xcc-8004.652.1at 594.797 kb on - strandat 594.832 kb on + strandat 594.832 kb on + strandat 594.865 kb on + strandat 594.865 kb on + strandat 594.866 kb on - strandat 594.866 kb on - strandat 595.160 kb on + strand, within Xcc-8004.653.1at 595.160 kb on + strand, within Xcc-8004.653.1at 595.160 kb on + strand, within Xcc-8004.653.1at 595.161 kb on - strand, within Xcc-8004.653.1at 595.161 kb on - strand, within Xcc-8004.653.1at 595.161 kb on - strand, within Xcc-8004.653.1at 595.299 kb on - strand, within Xcc-8004.653.1at 595.299 kb on - strand, within Xcc-8004.653.1at 595.792 kb on + strand, within Xcc-8004.653.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_casamino
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592,210 + Xcc-8004.650.1 0.56 -0.6
592,210 + Xcc-8004.650.1 0.56 +0.5
592,211 - Xcc-8004.650.1 0.57 -0.0
592,211 - Xcc-8004.650.1 0.57 +0.3
592,211 - Xcc-8004.650.1 0.57 -0.7
592,211 - Xcc-8004.650.1 0.57 +0.0
592,211 - Xcc-8004.650.1 0.57 -0.7
592,243 + Xcc-8004.650.1 0.64 +2.0
592,243 + Xcc-8004.650.1 0.64 +0.1
592,244 - Xcc-8004.650.1 0.65 +0.7
592,244 - Xcc-8004.650.1 0.65 -0.6
592,313 - Xcc-8004.650.1 0.82 -0.6
592,313 - Xcc-8004.650.1 0.82 -0.5
592,416 + -0.3
592,416 + +0.2
592,416 + +0.7
592,416 + -0.7
592,416 + +0.9
592,416 + -0.3
592,416 + +0.3
592,416 + -0.2
592,417 - -2.7
592,417 - +0.6
592,417 - -0.9
592,417 - -0.4
592,417 - -0.6
592,417 - -0.2
592,417 - +0.1
592,417 - -0.2
592,417 - -1.2
592,417 - -0.0
592,425 + Xcc-8004.651.1 0.11 -0.2
592,425 + Xcc-8004.651.1 0.11 -0.7
592,425 + Xcc-8004.651.1 0.11 -0.9
592,425 + Xcc-8004.651.1 0.11 -0.9
592,425 + Xcc-8004.651.1 0.11 -0.9
592,425 + Xcc-8004.651.1 0.11 +0.8
592,426 - Xcc-8004.651.1 0.11 -0.5
592,426 - Xcc-8004.651.1 0.11 -0.2
592,426 - Xcc-8004.651.1 0.11 +0.1
593,001 - -0.6
593,086 - -0.9
593,094 + +0.7
593,094 + +0.4
593,095 - -2.2
593,095 - +0.4
593,095 - -1.1
593,095 - +1.2
593,497 + Xcc-8004.652.1 0.22 +1.3
593,497 + Xcc-8004.652.1 0.22 +0.7
593,497 + Xcc-8004.652.1 0.22 +0.1
593,497 + Xcc-8004.652.1 0.22 -0.9
593,497 + Xcc-8004.652.1 0.22 +0.2
593,497 + Xcc-8004.652.1 0.22 +0.4
593,498 - Xcc-8004.652.1 0.22 -0.1
593,498 - Xcc-8004.652.1 0.22 -0.5
593,498 - Xcc-8004.652.1 0.22 -0.1
593,500 + Xcc-8004.652.1 0.23 -0.2
593,500 + Xcc-8004.652.1 0.23 -0.8
593,500 + Xcc-8004.652.1 0.23 +0.4
593,500 + Xcc-8004.652.1 0.23 -1.0
593,500 + Xcc-8004.652.1 0.23 -0.2
593,501 - Xcc-8004.652.1 0.23 +2.4
593,501 - Xcc-8004.652.1 0.23 -0.6
593,501 - Xcc-8004.652.1 0.23 -0.2
593,501 - Xcc-8004.652.1 0.23 -0.6
593,501 - Xcc-8004.652.1 0.23 -1.2
593,501 - Xcc-8004.652.1 0.23 -0.3
593,501 - Xcc-8004.652.1 0.23 +0.6
593,557 + Xcc-8004.652.1 0.25 -0.0
593,558 - Xcc-8004.652.1 0.26 -1.7
593,636 - Xcc-8004.652.1 0.30 -0.2
593,636 - Xcc-8004.652.1 0.30 +0.2
594,055 + Xcc-8004.652.1 0.51 -0.1
594,055 + Xcc-8004.652.1 0.51 -0.2
594,056 - Xcc-8004.652.1 0.51 -0.8
594,056 - Xcc-8004.652.1 0.51 -0.4
594,056 - Xcc-8004.652.1 0.51 -0.0
594,193 + Xcc-8004.652.1 0.59 +0.2
594,193 + Xcc-8004.652.1 0.59 +2.7
594,193 + Xcc-8004.652.1 0.59 -0.4
594,193 + Xcc-8004.652.1 0.59 -1.2
594,193 + Xcc-8004.652.1 0.59 -0.8
594,193 + Xcc-8004.652.1 0.59 +0.0
594,193 + Xcc-8004.652.1 0.59 -0.2
594,194 - Xcc-8004.652.1 0.59 +0.7
594,194 - Xcc-8004.652.1 0.59 -2.7
594,194 - Xcc-8004.652.1 0.59 -0.5
594,194 - Xcc-8004.652.1 0.59 -0.2
594,194 - Xcc-8004.652.1 0.59 +0.3
594,194 - Xcc-8004.652.1 0.59 +0.7
594,194 - Xcc-8004.652.1 0.59 -1.2
594,194 - Xcc-8004.652.1 0.59 -1.6
594,194 - Xcc-8004.652.1 0.59 -0.1
594,229 + Xcc-8004.652.1 0.60 +0.9
594,229 + Xcc-8004.652.1 0.60 +0.3
594,229 + Xcc-8004.652.1 0.60 +0.2
594,229 + Xcc-8004.652.1 0.60 +0.1
594,229 + Xcc-8004.652.1 0.60 +1.8
594,229 + Xcc-8004.652.1 0.60 +0.4
594,230 - Xcc-8004.652.1 0.60 +0.2
594,230 - Xcc-8004.652.1 0.60 -0.1
594,230 - Xcc-8004.652.1 0.60 -0.3
594,230 - Xcc-8004.652.1 0.60 +0.5
594,230 - Xcc-8004.652.1 0.60 -0.3
594,230 - Xcc-8004.652.1 0.60 -0.2
594,230 - Xcc-8004.652.1 0.60 -0.2
594,252 + Xcc-8004.652.1 0.62 +0.8
594,601 + Xcc-8004.652.1 0.80 +0.1
594,796 + Xcc-8004.652.1 0.90 -1.5
594,797 - -2.6
594,832 + -0.4
594,832 + +0.4
594,865 + +0.0
594,865 + +0.3
594,866 - +0.3
594,866 - +0.2
595,160 + Xcc-8004.653.1 0.11 +0.3
595,160 + Xcc-8004.653.1 0.11 +0.9
595,160 + Xcc-8004.653.1 0.11 -1.0
595,161 - Xcc-8004.653.1 0.12 +0.4
595,161 - Xcc-8004.653.1 0.12 +0.0
595,161 - Xcc-8004.653.1 0.12 +1.1
595,299 - Xcc-8004.653.1 0.27 +1.0
595,299 - Xcc-8004.653.1 0.27 -0.9
595,792 + Xcc-8004.653.1 0.81 -1.1

Or see this region's nucleotide sequence