Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4906.1

Experiment: Xantho_MME_glucose_casamino

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4904.1 and Xcc-8004.4905.1 are separated by 57 nucleotidesXcc-8004.4905.1 and Xcc-8004.4906.1 are separated by 269 nucleotidesXcc-8004.4906.1 and Xcc-8004.4907.1 overlap by 8 nucleotides Xcc-8004.4904.1: Xcc-8004.4904.1 - O-antigen acetylase, at 4,662,117 to 4,663,241 Xcc-8004.4904.1 Xcc-8004.4905.1: Xcc-8004.4905.1 - FIG01211209: hypothetical protein, at 4,663,299 to 4,663,649 Xcc-8004.4905.1 Xcc-8004.4906.1: Xcc-8004.4906.1 - Glucosyltransferase, at 4,663,919 to 4,665,253 Xcc-8004.4906.1 Xcc-8004.4907.1: Xcc-8004.4907.1 - Enterobactin synthetase component F (EC 2.7.7.-), at 4,665,246 to 4,669,226 Xcc-8004.4907.1 Position (kb) 4663 4664 4665 4666Strain fitness (log2 ratio) -2 -1 0 1 2at 4662.967 kb on + strand, within Xcc-8004.4904.1at 4662.967 kb on + strand, within Xcc-8004.4904.1at 4663.021 kb on + strand, within Xcc-8004.4904.1at 4663.021 kb on + strand, within Xcc-8004.4904.1at 4663.021 kb on + strand, within Xcc-8004.4904.1at 4663.022 kb on - strand, within Xcc-8004.4904.1at 4663.022 kb on - strand, within Xcc-8004.4904.1at 4663.022 kb on - strand, within Xcc-8004.4904.1at 4663.315 kb on + strandat 4663.315 kb on + strandat 4663.315 kb on + strandat 4663.316 kb on - strandat 4663.316 kb on - strandat 4663.316 kb on - strandat 4663.316 kb on - strandat 4663.316 kb on - strandat 4663.344 kb on - strand, within Xcc-8004.4905.1at 4663.618 kb on - strandat 4663.618 kb on - strandat 4663.701 kb on + strandat 4663.701 kb on + strandat 4663.701 kb on + strandat 4663.721 kb on + strandat 4663.721 kb on + strandat 4663.745 kb on + strandat 4663.746 kb on - strandat 4663.746 kb on - strandat 4663.805 kb on + strandat 4663.806 kb on - strandat 4663.807 kb on + strandat 4663.807 kb on + strandat 4663.808 kb on - strandat 4663.808 kb on - strandat 4664.125 kb on + strand, within Xcc-8004.4906.1at 4664.449 kb on + strand, within Xcc-8004.4906.1at 4664.475 kb on + strand, within Xcc-8004.4906.1at 4664.475 kb on + strand, within Xcc-8004.4906.1at 4664.475 kb on + strand, within Xcc-8004.4906.1at 4664.476 kb on - strand, within Xcc-8004.4906.1at 4664.476 kb on - strand, within Xcc-8004.4906.1at 4664.476 kb on - strand, within Xcc-8004.4906.1at 4664.476 kb on - strand, within Xcc-8004.4906.1at 4664.613 kb on + strand, within Xcc-8004.4906.1at 4664.614 kb on - strand, within Xcc-8004.4906.1at 4664.619 kb on + strand, within Xcc-8004.4906.1at 4664.620 kb on - strand, within Xcc-8004.4906.1at 4664.620 kb on - strand, within Xcc-8004.4906.1at 4664.620 kb on - strand, within Xcc-8004.4906.1at 4664.620 kb on - strand, within Xcc-8004.4906.1at 4664.620 kb on - strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.872 kb on + strand, within Xcc-8004.4906.1at 4664.872 kb on + strand, within Xcc-8004.4906.1at 4665.132 kb on - strandat 4665.132 kb on - strandat 4665.253 kb on + strandat 4665.381 kb on - strandat 4665.412 kb on + strandat 4665.412 kb on + strandat 4665.412 kb on + strandat 4665.413 kb on - strandat 4665.413 kb on - strandat 4665.413 kb on - strandat 4665.413 kb on - strandat 4665.527 kb on - strandat 4665.992 kb on - strand, within Xcc-8004.4907.1at 4666.033 kb on + strand, within Xcc-8004.4907.1at 4666.033 kb on + strand, within Xcc-8004.4907.1at 4666.033 kb on + strand, within Xcc-8004.4907.1at 4666.034 kb on - strand, within Xcc-8004.4907.1at 4666.080 kb on - strand, within Xcc-8004.4907.1at 4666.143 kb on - strand, within Xcc-8004.4907.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_casamino
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4,662,967 + Xcc-8004.4904.1 0.76 -1.9
4,662,967 + Xcc-8004.4904.1 0.76 +0.2
4,663,021 + Xcc-8004.4904.1 0.80 -0.8
4,663,021 + Xcc-8004.4904.1 0.80 +0.2
4,663,021 + Xcc-8004.4904.1 0.80 -0.6
4,663,022 - Xcc-8004.4904.1 0.80 +1.1
4,663,022 - Xcc-8004.4904.1 0.80 -0.1
4,663,022 - Xcc-8004.4904.1 0.80 +1.0
4,663,315 + +0.1
4,663,315 + -0.4
4,663,315 + +1.1
4,663,316 - -1.2
4,663,316 - +0.1
4,663,316 - -0.1
4,663,316 - -0.9
4,663,316 - +2.0
4,663,344 - Xcc-8004.4905.1 0.13 +0.7
4,663,618 - +0.8
4,663,618 - -0.7
4,663,701 + -1.0
4,663,701 + +1.4
4,663,701 + +0.8
4,663,721 + -0.7
4,663,721 + +1.0
4,663,745 + -0.7
4,663,746 - -0.1
4,663,746 - -0.2
4,663,805 + -0.1
4,663,806 - -0.6
4,663,807 + +0.0
4,663,807 + -1.4
4,663,808 - -1.1
4,663,808 - -0.2
4,664,125 + Xcc-8004.4906.1 0.15 -0.3
4,664,449 + Xcc-8004.4906.1 0.40 -0.2
4,664,475 + Xcc-8004.4906.1 0.42 -0.8
4,664,475 + Xcc-8004.4906.1 0.42 -0.9
4,664,475 + Xcc-8004.4906.1 0.42 -0.4
4,664,476 - Xcc-8004.4906.1 0.42 +1.1
4,664,476 - Xcc-8004.4906.1 0.42 +0.6
4,664,476 - Xcc-8004.4906.1 0.42 +2.1
4,664,476 - Xcc-8004.4906.1 0.42 -0.4
4,664,613 + Xcc-8004.4906.1 0.52 -0.2
4,664,614 - Xcc-8004.4906.1 0.52 -0.2
4,664,619 + Xcc-8004.4906.1 0.52 +0.1
4,664,620 - Xcc-8004.4906.1 0.53 +0.7
4,664,620 - Xcc-8004.4906.1 0.53 -0.1
4,664,620 - Xcc-8004.4906.1 0.53 -0.7
4,664,620 - Xcc-8004.4906.1 0.53 -1.1
4,664,620 - Xcc-8004.4906.1 0.53 -0.6
4,664,621 + Xcc-8004.4906.1 0.53 -0.2
4,664,621 + Xcc-8004.4906.1 0.53 +1.3
4,664,621 + Xcc-8004.4906.1 0.53 +0.3
4,664,621 + Xcc-8004.4906.1 0.53 +0.3
4,664,621 + Xcc-8004.4906.1 0.53 +0.2
4,664,621 + Xcc-8004.4906.1 0.53 -0.1
4,664,621 + Xcc-8004.4906.1 0.53 -0.8
4,664,621 + Xcc-8004.4906.1 0.53 +0.4
4,664,621 + Xcc-8004.4906.1 0.53 +0.6
4,664,621 + Xcc-8004.4906.1 0.53 +0.3
4,664,621 + Xcc-8004.4906.1 0.53 -0.4
4,664,621 + Xcc-8004.4906.1 0.53 -0.2
4,664,621 + Xcc-8004.4906.1 0.53 -0.6
4,664,621 + Xcc-8004.4906.1 0.53 -0.3
4,664,622 - Xcc-8004.4906.1 0.53 +0.6
4,664,622 - Xcc-8004.4906.1 0.53 -0.5
4,664,622 - Xcc-8004.4906.1 0.53 +0.2
4,664,622 - Xcc-8004.4906.1 0.53 +0.2
4,664,622 - Xcc-8004.4906.1 0.53 +0.7
4,664,622 - Xcc-8004.4906.1 0.53 -1.3
4,664,622 - Xcc-8004.4906.1 0.53 -0.1
4,664,622 - Xcc-8004.4906.1 0.53 -0.6
4,664,622 - Xcc-8004.4906.1 0.53 -0.6
4,664,622 - Xcc-8004.4906.1 0.53 -1.2
4,664,622 - Xcc-8004.4906.1 0.53 -0.3
4,664,872 + Xcc-8004.4906.1 0.71 +0.8
4,664,872 + Xcc-8004.4906.1 0.71 -0.7
4,665,132 - -1.2
4,665,132 - +0.6
4,665,253 + -0.3
4,665,381 - +0.1
4,665,412 + +1.8
4,665,412 + -0.2
4,665,412 + +2.1
4,665,413 - -0.4
4,665,413 - -1.5
4,665,413 - +0.4
4,665,413 - -0.5
4,665,527 - -0.1
4,665,992 - Xcc-8004.4907.1 0.19 -0.6
4,666,033 + Xcc-8004.4907.1 0.20 -0.6
4,666,033 + Xcc-8004.4907.1 0.20 -0.0
4,666,033 + Xcc-8004.4907.1 0.20 +1.6
4,666,034 - Xcc-8004.4907.1 0.20 +0.8
4,666,080 - Xcc-8004.4907.1 0.21 +0.9
4,666,143 - Xcc-8004.4907.1 0.23 +0.3

Or see this region's nucleotide sequence