Experiment: Xantho_MME_glucose_casamino
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3557.1 and Xcc-8004.3558.1 are separated by 236 nucleotides Xcc-8004.3558.1 and Xcc-8004.3559.1 are separated by 2 nucleotides Xcc-8004.3559.1 and Xcc-8004.3560.1 overlap by 4 nucleotides
Xcc-8004.3557.1: Xcc-8004.3557.1 - Uridine monophosphate kinase (EC 2.7.4.22), at 3,447,619 to 3,448,341
Xcc-8004.3557.1
Xcc-8004.3558.1: Xcc-8004.3558.1 - Ribosome recycling factor, at 3,448,578 to 3,449,135
Xcc-8004.3558.1
Xcc-8004.3559.1: Xcc-8004.3559.1 - Undecaprenyl diphosphate synthase (EC 2.5.1.31), at 3,449,138 to 3,449,914
Xcc-8004.3559.1
Xcc-8004.3560.1: Xcc-8004.3560.1 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 3,449,911 to 3,450,738
Xcc-8004.3560.1
Position (kb)
3448
3449
3450 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3448.325 kb on + strand at 3448.540 kb on + strand at 3448.540 kb on + strand at 3448.540 kb on + strand at 3448.540 kb on + strand at 3448.540 kb on + strand at 3448.540 kb on + strand at 3448.541 kb on - strand at 3448.541 kb on - strand at 3448.541 kb on - strand at 3448.542 kb on + strand at 3448.542 kb on + strand at 3448.542 kb on + strand at 3448.554 kb on + strand at 3448.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_casamino remove 3,448,325 + +0.5 3,448,540 + +0.1 3,448,540 + +0.7 3,448,540 + +2.1 3,448,540 + -0.4 3,448,540 + -0.0 3,448,540 + -0.3 3,448,541 - +0.6 3,448,541 - -0.0 3,448,541 - -0.1 3,448,542 + -0.2 3,448,542 + -1.0 3,448,542 + -0.2 3,448,554 + -2.0 3,448,554 + +1.1
Or see this region's nucleotide sequence