Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.219.1

Experiment: Xantho_MME_glucose_casamino

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.217.1 and Xcc-8004.218.1 overlap by 11 nucleotidesXcc-8004.218.1 and Xcc-8004.219.1 are separated by 60 nucleotidesXcc-8004.219.1 and Xcc-8004.220.1 overlap by 4 nucleotides Xcc-8004.217.1: Xcc-8004.217.1 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 214,033 to 215,262 Xcc-8004.217.1 Xcc-8004.218.1: Xcc-8004.218.1 - FIG01210778: hypothetical protein, at 215,252 to 215,644 Xcc-8004.218.1 Xcc-8004.219.1: Xcc-8004.219.1 - L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1), at 215,705 to 216,442 Xcc-8004.219.1 Xcc-8004.220.1: Xcc-8004.220.1 - L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation, at 216,439 to 217,911 Xcc-8004.220.1 Position (kb) 215 216 217Strain fitness (log2 ratio) -2 -1 0 1at 214.912 kb on + strand, within Xcc-8004.217.1at 214.913 kb on - strand, within Xcc-8004.217.1at 215.102 kb on - strand, within Xcc-8004.217.1at 215.102 kb on - strand, within Xcc-8004.217.1at 215.221 kb on + strandat 215.222 kb on - strandat 215.222 kb on - strandat 215.222 kb on - strandat 215.242 kb on + strandat 215.243 kb on - strandat 215.260 kb on + strandat 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.391 kb on - strand, within Xcc-8004.218.1at 215.391 kb on - strand, within Xcc-8004.218.1at 215.441 kb on + strand, within Xcc-8004.218.1at 215.441 kb on + strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.459 kb on + strand, within Xcc-8004.218.1at 215.459 kb on + strand, within Xcc-8004.218.1at 215.459 kb on + strand, within Xcc-8004.218.1at 215.459 kb on + strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.606 kb on + strandat 215.606 kb on + strandat 215.607 kb on - strandat 215.607 kb on - strandat 215.607 kb on - strandat 215.607 kb on - strandat 215.607 kb on - strandat 215.939 kb on + strand, within Xcc-8004.219.1at 215.939 kb on + strand, within Xcc-8004.219.1at 215.939 kb on + strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 216.031 kb on + strand, within Xcc-8004.219.1at 216.032 kb on - strand, within Xcc-8004.219.1at 216.302 kb on + strand, within Xcc-8004.219.1at 216.303 kb on - strand, within Xcc-8004.219.1at 216.661 kb on + strand, within Xcc-8004.220.1at 216.661 kb on + strand, within Xcc-8004.220.1at 216.661 kb on + strand, within Xcc-8004.220.1at 216.670 kb on + strand, within Xcc-8004.220.1at 216.670 kb on + strand, within Xcc-8004.220.1at 216.670 kb on + strand, within Xcc-8004.220.1at 216.670 kb on + strand, within Xcc-8004.220.1at 216.671 kb on - strand, within Xcc-8004.220.1at 216.671 kb on - strand, within Xcc-8004.220.1at 216.671 kb on - strand, within Xcc-8004.220.1at 216.671 kb on - strand, within Xcc-8004.220.1at 216.671 kb on - strand, within Xcc-8004.220.1at 216.671 kb on - strand, within Xcc-8004.220.1at 216.728 kb on + strand, within Xcc-8004.220.1at 216.728 kb on + strand, within Xcc-8004.220.1at 216.728 kb on + strand, within Xcc-8004.220.1at 216.729 kb on - strand, within Xcc-8004.220.1at 216.729 kb on - strand, within Xcc-8004.220.1at 216.729 kb on - strand, within Xcc-8004.220.1at 216.786 kb on + strand, within Xcc-8004.220.1at 216.787 kb on - strand, within Xcc-8004.220.1at 216.787 kb on - strand, within Xcc-8004.220.1at 216.787 kb on - strand, within Xcc-8004.220.1at 216.787 kb on - strand, within Xcc-8004.220.1at 216.790 kb on + strand, within Xcc-8004.220.1at 216.790 kb on + strand, within Xcc-8004.220.1at 216.790 kb on + strand, within Xcc-8004.220.1at 216.790 kb on + strand, within Xcc-8004.220.1at 216.790 kb on + strand, within Xcc-8004.220.1at 216.790 kb on + strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.791 kb on - strand, within Xcc-8004.220.1at 216.934 kb on + strand, within Xcc-8004.220.1at 216.934 kb on + strand, within Xcc-8004.220.1at 216.934 kb on + strand, within Xcc-8004.220.1at 216.935 kb on - strand, within Xcc-8004.220.1at 216.935 kb on - strand, within Xcc-8004.220.1at 216.979 kb on + strand, within Xcc-8004.220.1at 217.021 kb on + strand, within Xcc-8004.220.1at 217.021 kb on + strand, within Xcc-8004.220.1at 217.021 kb on + strand, within Xcc-8004.220.1at 217.022 kb on - strand, within Xcc-8004.220.1at 217.022 kb on - strand, within Xcc-8004.220.1at 217.048 kb on + strand, within Xcc-8004.220.1at 217.048 kb on + strand, within Xcc-8004.220.1at 217.048 kb on + strand, within Xcc-8004.220.1at 217.048 kb on + strand, within Xcc-8004.220.1at 217.048 kb on + strand, within Xcc-8004.220.1at 217.081 kb on + strand, within Xcc-8004.220.1at 217.081 kb on + strand, within Xcc-8004.220.1at 217.081 kb on + strand, within Xcc-8004.220.1at 217.081 kb on + strand, within Xcc-8004.220.1at 217.081 kb on + strand, within Xcc-8004.220.1at 217.081 kb on + strand, within Xcc-8004.220.1at 217.081 kb on + strand, within Xcc-8004.220.1at 217.082 kb on - strand, within Xcc-8004.220.1at 217.082 kb on - strand, within Xcc-8004.220.1at 217.082 kb on - strand, within Xcc-8004.220.1at 217.082 kb on - strand, within Xcc-8004.220.1at 217.082 kb on - strand, within Xcc-8004.220.1at 217.082 kb on - strand, within Xcc-8004.220.1at 217.093 kb on + strand, within Xcc-8004.220.1at 217.094 kb on - strand, within Xcc-8004.220.1at 217.103 kb on + strand, within Xcc-8004.220.1at 217.104 kb on - strand, within Xcc-8004.220.1at 217.104 kb on - strand, within Xcc-8004.220.1at 217.104 kb on - strand, within Xcc-8004.220.1at 217.111 kb on + strand, within Xcc-8004.220.1at 217.148 kb on + strand, within Xcc-8004.220.1at 217.148 kb on + strand, within Xcc-8004.220.1at 217.148 kb on + strand, within Xcc-8004.220.1at 217.149 kb on - strand, within Xcc-8004.220.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_casamino
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214,912 + Xcc-8004.217.1 0.71 -0.0
214,913 - Xcc-8004.217.1 0.72 +0.7
215,102 - Xcc-8004.217.1 0.87 +0.6
215,102 - Xcc-8004.217.1 0.87 -0.3
215,221 + +1.0
215,222 - -2.1
215,222 - +1.0
215,222 - +0.2
215,242 + -0.4
215,243 - -0.4
215,260 + +0.7
215,390 + Xcc-8004.218.1 0.35 -1.0
215,390 + Xcc-8004.218.1 0.35 -0.1
215,390 + Xcc-8004.218.1 0.35 -2.1
215,390 + Xcc-8004.218.1 0.35 -1.1
215,390 + Xcc-8004.218.1 0.35 -0.6
215,390 + Xcc-8004.218.1 0.35 -0.5
215,390 + Xcc-8004.218.1 0.35 +0.2
215,390 + Xcc-8004.218.1 0.35 +1.2
215,390 + Xcc-8004.218.1 0.35 -0.3
215,391 - Xcc-8004.218.1 0.35 -0.4
215,391 - Xcc-8004.218.1 0.35 +0.2
215,441 + Xcc-8004.218.1 0.48 -0.0
215,441 + Xcc-8004.218.1 0.48 -0.2
215,442 - Xcc-8004.218.1 0.48 -0.1
215,442 - Xcc-8004.218.1 0.48 +0.2
215,442 - Xcc-8004.218.1 0.48 -1.4
215,442 - Xcc-8004.218.1 0.48 -1.5
215,442 - Xcc-8004.218.1 0.48 -0.6
215,442 - Xcc-8004.218.1 0.48 -0.4
215,442 - Xcc-8004.218.1 0.48 -1.5
215,459 + Xcc-8004.218.1 0.53 -0.5
215,459 + Xcc-8004.218.1 0.53 -0.1
215,459 + Xcc-8004.218.1 0.53 -1.4
215,459 + Xcc-8004.218.1 0.53 -0.9
215,460 - Xcc-8004.218.1 0.53 -0.2
215,460 - Xcc-8004.218.1 0.53 +0.2
215,460 - Xcc-8004.218.1 0.53 +1.1
215,460 - Xcc-8004.218.1 0.53 +1.1
215,460 - Xcc-8004.218.1 0.53 -1.1
215,606 + -0.3
215,606 + -0.6
215,607 - -0.2
215,607 - -0.7
215,607 - +0.5
215,607 - -0.5
215,607 - +1.4
215,939 + Xcc-8004.219.1 0.32 -0.8
215,939 + Xcc-8004.219.1 0.32 +0.5
215,939 + Xcc-8004.219.1 0.32 -0.3
215,940 - Xcc-8004.219.1 0.32 -0.4
215,940 - Xcc-8004.219.1 0.32 -0.2
215,940 - Xcc-8004.219.1 0.32 -2.1
215,940 - Xcc-8004.219.1 0.32 -1.1
215,940 - Xcc-8004.219.1 0.32 -0.5
216,031 + Xcc-8004.219.1 0.44 -1.4
216,032 - Xcc-8004.219.1 0.44 +0.9
216,302 + Xcc-8004.219.1 0.81 +0.5
216,303 - Xcc-8004.219.1 0.81 -0.2
216,661 + Xcc-8004.220.1 0.15 +0.5
216,661 + Xcc-8004.220.1 0.15 -0.7
216,661 + Xcc-8004.220.1 0.15 -1.6
216,670 + Xcc-8004.220.1 0.16 +0.6
216,670 + Xcc-8004.220.1 0.16 -0.1
216,670 + Xcc-8004.220.1 0.16 -0.9
216,670 + Xcc-8004.220.1 0.16 -0.7
216,671 - Xcc-8004.220.1 0.16 -0.6
216,671 - Xcc-8004.220.1 0.16 -0.3
216,671 - Xcc-8004.220.1 0.16 -0.3
216,671 - Xcc-8004.220.1 0.16 -1.0
216,671 - Xcc-8004.220.1 0.16 -0.4
216,671 - Xcc-8004.220.1 0.16 +0.2
216,728 + Xcc-8004.220.1 0.20 +0.2
216,728 + Xcc-8004.220.1 0.20 -1.7
216,728 + Xcc-8004.220.1 0.20 -1.0
216,729 - Xcc-8004.220.1 0.20 -0.2
216,729 - Xcc-8004.220.1 0.20 -0.8
216,729 - Xcc-8004.220.1 0.20 -1.0
216,786 + Xcc-8004.220.1 0.24 +0.0
216,787 - Xcc-8004.220.1 0.24 +0.5
216,787 - Xcc-8004.220.1 0.24 -0.3
216,787 - Xcc-8004.220.1 0.24 -0.4
216,787 - Xcc-8004.220.1 0.24 +0.0
216,790 + Xcc-8004.220.1 0.24 +0.2
216,790 + Xcc-8004.220.1 0.24 +0.4
216,790 + Xcc-8004.220.1 0.24 -0.4
216,790 + Xcc-8004.220.1 0.24 -0.2
216,790 + Xcc-8004.220.1 0.24 +1.7
216,790 + Xcc-8004.220.1 0.24 -0.8
216,791 - Xcc-8004.220.1 0.24 -0.6
216,791 - Xcc-8004.220.1 0.24 +0.7
216,791 - Xcc-8004.220.1 0.24 -0.5
216,791 - Xcc-8004.220.1 0.24 +1.7
216,791 - Xcc-8004.220.1 0.24 -0.6
216,791 - Xcc-8004.220.1 0.24 -1.2
216,791 - Xcc-8004.220.1 0.24 -0.3
216,791 - Xcc-8004.220.1 0.24 -0.0
216,791 - Xcc-8004.220.1 0.24 -0.1
216,791 - Xcc-8004.220.1 0.24 +0.7
216,791 - Xcc-8004.220.1 0.24 -0.4
216,934 + Xcc-8004.220.1 0.34 -0.5
216,934 + Xcc-8004.220.1 0.34 +1.0
216,934 + Xcc-8004.220.1 0.34 +0.2
216,935 - Xcc-8004.220.1 0.34 +1.5
216,935 - Xcc-8004.220.1 0.34 +0.6
216,979 + Xcc-8004.220.1 0.37 +0.1
217,021 + Xcc-8004.220.1 0.40 -0.6
217,021 + Xcc-8004.220.1 0.40 -0.3
217,021 + Xcc-8004.220.1 0.40 -1.8
217,022 - Xcc-8004.220.1 0.40 +1.7
217,022 - Xcc-8004.220.1 0.40 -0.1
217,048 + Xcc-8004.220.1 0.41 +0.2
217,048 + Xcc-8004.220.1 0.41 +1.0
217,048 + Xcc-8004.220.1 0.41 -0.7
217,048 + Xcc-8004.220.1 0.41 +0.9
217,048 + Xcc-8004.220.1 0.41 -0.6
217,081 + Xcc-8004.220.1 0.44 +0.2
217,081 + Xcc-8004.220.1 0.44 +1.7
217,081 + Xcc-8004.220.1 0.44 +0.5
217,081 + Xcc-8004.220.1 0.44 +0.7
217,081 + Xcc-8004.220.1 0.44 +1.0
217,081 + Xcc-8004.220.1 0.44 -0.5
217,081 + Xcc-8004.220.1 0.44 +0.7
217,082 - Xcc-8004.220.1 0.44 -0.1
217,082 - Xcc-8004.220.1 0.44 -1.0
217,082 - Xcc-8004.220.1 0.44 +0.7
217,082 - Xcc-8004.220.1 0.44 -1.6
217,082 - Xcc-8004.220.1 0.44 +1.0
217,082 - Xcc-8004.220.1 0.44 -0.3
217,093 + Xcc-8004.220.1 0.44 -0.4
217,094 - Xcc-8004.220.1 0.44 -1.4
217,103 + Xcc-8004.220.1 0.45 -0.4
217,104 - Xcc-8004.220.1 0.45 +0.1
217,104 - Xcc-8004.220.1 0.45 -0.6
217,104 - Xcc-8004.220.1 0.45 +0.1
217,111 + Xcc-8004.220.1 0.46 +0.2
217,148 + Xcc-8004.220.1 0.48 -0.9
217,148 + Xcc-8004.220.1 0.48 -0.5
217,148 + Xcc-8004.220.1 0.48 -0.7
217,149 - Xcc-8004.220.1 0.48 -1.1

Or see this region's nucleotide sequence