Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14425

Experiment: R2A with Nickel (II) chloride 0.625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 0.625 mM
3,207,797	+		LRK54_RS14420	0.49	-0.6
3,207,875	+		LRK54_RS14420	0.55	-0.1
3,207,875	+		LRK54_RS14420	0.55	+1.4
3,207,875	+		LRK54_RS14420	0.55	-2.4
3,207,875	+		LRK54_RS14420	0.55	-0.5
3,207,875	+		LRK54_RS14420	0.55	+0.4
3,207,875	+		LRK54_RS14420	0.55	-0.2
3,207,875	+		LRK54_RS14420	0.55	-0.2
3,207,875	+		LRK54_RS14420	0.55	-0.6
3,207,875	+		LRK54_RS14420	0.55	-1.4
3,207,875	+		LRK54_RS14420	0.55	-1.2
3,207,875	+		LRK54_RS14420	0.55	+0.6
3,207,875	+		LRK54_RS14420	0.55	-0.7
3,207,875	+		LRK54_RS14420	0.55	-1.3
3,207,875	+		LRK54_RS14420	0.55	+0.4
3,207,875	+		LRK54_RS14420	0.55	-0.2
3,207,876	-		LRK54_RS14420	0.55	-0.8
3,207,876	-		LRK54_RS14420	0.55	-1.2
3,207,876	-		LRK54_RS14420	0.55	-0.3
3,207,876	-		LRK54_RS14420	0.55	+1.4
3,207,876	-		LRK54_RS14420	0.55	+2.0
3,207,876	-		LRK54_RS14420	0.55	-1.3
3,207,876	-		LRK54_RS14420	0.55	+1.0
3,207,876	-		LRK54_RS14420	0.55	+0.9
3,207,876	-		LRK54_RS14420	0.55	-0.1
3,207,876	-		LRK54_RS14420	0.55	-1.2
3,207,876	-		LRK54_RS14420	0.55	-0.8
3,207,876	-		LRK54_RS14420	0.55	-1.2
3,207,876	-		LRK54_RS14420	0.55	-2.1
3,207,876	-		LRK54_RS14420	0.55	-1.9
3,207,876	-		LRK54_RS14420	0.55	+0.4
3,207,876	-		LRK54_RS14420	0.55	-0.1
3,207,876	-		LRK54_RS14420	0.55	-1.6
3,207,876	-		LRK54_RS14420	0.55	-1.0
3,207,876	-		LRK54_RS14420	0.55	-0.8
3,208,037	+		LRK54_RS14420	0.68	-1.7
3,208,038	-		LRK54_RS14420	0.68	-0.6
3,208,038	-		LRK54_RS14420	0.68	-1.0
3,208,038	-		LRK54_RS14420	0.68	-1.8
3,208,355	+				-0.9
3,208,355	+				-2.6
3,208,355	+				+0.5
3,208,355	+				-0.0
3,208,355	+				-2.1
3,208,355	+				-0.0
3,208,355	+				-0.2
3,208,355	+				-0.6
3,208,356	-				-0.3
3,208,356	-				-1.3
3,208,356	-				-1.4
3,208,356	-				-1.8
3,208,356	-				+0.4
3,208,356	-				-0.6
3,208,682	+		LRK54_RS14425	0.18	+0.7
3,208,682	+		LRK54_RS14425	0.18	+0.7
3,208,682	+		LRK54_RS14425	0.18	-0.2
3,208,682	+		LRK54_RS14425	0.18	-0.2
3,208,682	+		LRK54_RS14425	0.18	-1.0
3,208,682	+		LRK54_RS14425	0.18	+1.0
3,208,682	+		LRK54_RS14425	0.18	+0.6
3,208,682	+		LRK54_RS14425	0.18	+0.6
3,208,682	+		LRK54_RS14425	0.18	+0.2
3,208,682	+		LRK54_RS14425	0.18	+0.7
3,208,682	+		LRK54_RS14425	0.18	+0.8
3,208,682	+		LRK54_RS14425	0.18	-0.1
3,208,682	+		LRK54_RS14425	0.18	-0.0
3,208,682	+		LRK54_RS14425	0.18	+0.6
3,208,682	+		LRK54_RS14425	0.18	+0.8
3,208,682	+		LRK54_RS14425	0.18	-1.4
3,208,682	+		LRK54_RS14425	0.18	+0.3
3,208,682	+		LRK54_RS14425	0.18	+0.0
3,208,683	-		LRK54_RS14425	0.18	-0.8
3,208,683	-		LRK54_RS14425	0.18	-0.0
3,208,683	-		LRK54_RS14425	0.18	-0.3
3,208,683	-		LRK54_RS14425	0.18	-1.0
3,208,683	-		LRK54_RS14425	0.18	-0.4
3,208,683	-		LRK54_RS14425	0.18	-0.5
3,208,683	-		LRK54_RS14425	0.18	+0.6
3,208,683	-		LRK54_RS14425	0.18	-0.3
3,208,683	-		LRK54_RS14425	0.18	-0.5
3,208,683	-		LRK54_RS14425	0.18	-2.3
3,208,683	-		LRK54_RS14425	0.18	+0.2
3,208,683	-		LRK54_RS14425	0.18	+0.6
3,208,683	-		LRK54_RS14425	0.18	+0.6
3,208,683	-		LRK54_RS14425	0.18	-1.8
3,208,683	-		LRK54_RS14425	0.18	-0.9
3,208,683	-		LRK54_RS14425	0.18	-0.0
3,208,683	-		LRK54_RS14425	0.18	-0.8
3,208,683	-		LRK54_RS14425	0.18	-1.1
3,208,683	-		LRK54_RS14425	0.18	-0.7
3,208,683	-		LRK54_RS14425	0.18	-0.1
3,208,707	-		LRK54_RS14425	0.20	-0.4
3,208,958	+		LRK54_RS14425	0.42	+1.0
3,208,958	+		LRK54_RS14425	0.42	-0.2
3,208,958	+		LRK54_RS14425	0.42	-0.0
3,208,959	-		LRK54_RS14425	0.42	-2.0
3,209,024	+		LRK54_RS14425	0.48	+0.8
3,209,024	+		LRK54_RS14425	0.48	-1.3
3,209,024	+		LRK54_RS14425	0.48	-0.2
3,209,030	+		LRK54_RS14425	0.48	+0.7
3,209,030	+		LRK54_RS14425	0.48	-1.0
3,209,030	+		LRK54_RS14425	0.48	+0.1
3,209,030	+		LRK54_RS14425	0.48	-0.8
3,209,030	+		LRK54_RS14425	0.48	-0.0
3,209,030	+		LRK54_RS14425	0.48	+1.4
3,209,030	+		LRK54_RS14425	0.48	-0.8
3,209,030	+		LRK54_RS14425	0.48	-0.3
3,209,030	+		LRK54_RS14425	0.48	+0.2
3,209,030	+		LRK54_RS14425	0.48	+1.6
3,209,030	+		LRK54_RS14425	0.48	+2.6
3,209,030	+		LRK54_RS14425	0.48	-0.3
3,209,030	+		LRK54_RS14425	0.48	-0.2
3,209,030	+		LRK54_RS14425	0.48	-0.2
3,209,030	+		LRK54_RS14425	0.48	-0.0
3,209,030	+		LRK54_RS14425	0.48	-0.6
3,209,030	+		LRK54_RS14425	0.48	+0.7
3,209,030	+		LRK54_RS14425	0.48	+1.1
3,209,030	+		LRK54_RS14425	0.48	-0.7
3,209,030	+		LRK54_RS14425	0.48	-0.7
3,209,030	+		LRK54_RS14425	0.48	-0.2
3,209,031	-		LRK54_RS14425	0.48	+0.4
3,209,031	-		LRK54_RS14425	0.48	+0.1
3,209,031	-		LRK54_RS14425	0.48	-0.5
3,209,031	-		LRK54_RS14425	0.48	-1.6
3,209,031	-		LRK54_RS14425	0.48	+0.1
3,209,031	-		LRK54_RS14425	0.48	+2.8
3,209,031	-		LRK54_RS14425	0.48	+1.2
3,209,031	-		LRK54_RS14425	0.48	-0.6
3,209,031	-		LRK54_RS14425	0.48	-0.2
3,209,031	-		LRK54_RS14425	0.48	-0.3
3,209,031	-		LRK54_RS14425	0.48	-1.1
3,209,031	-		LRK54_RS14425	0.48	+0.3
3,209,031	-		LRK54_RS14425	0.48	-0.0
3,209,031	-		LRK54_RS14425	0.48	-0.4
3,209,031	-		LRK54_RS14425	0.48	-1.1
3,209,031	-		LRK54_RS14425	0.48	-0.3
3,209,031	-		LRK54_RS14425	0.48	+1.0
3,209,031	-		LRK54_RS14425	0.48	-1.7
3,209,031	-		LRK54_RS14425	0.48	+0.2
3,209,031	-		LRK54_RS14425	0.48	+0.2
3,209,031	-		LRK54_RS14425	0.48	-1.3
3,209,031	-		LRK54_RS14425	0.48	+0.8
3,209,031	-		LRK54_RS14425	0.48	+0.4
3,209,069	+		LRK54_RS14425	0.52	-0.1
3,209,084	+		LRK54_RS14425	0.53	+0.0
3,209,228	+		LRK54_RS14425	0.65	+1.0
3,209,228	+		LRK54_RS14425	0.65	-0.3
3,209,229	-		LRK54_RS14425	0.66	-0.5
3,209,229	-		LRK54_RS14425	0.66	-0.3
3,209,237	+		LRK54_RS14425	0.66	-0.2
3,209,238	-		LRK54_RS14425	0.66	-0.0
3,209,238	-		LRK54_RS14425	0.66	+1.3
3,209,331	+		LRK54_RS14425	0.74	-0.1
3,209,331	+		LRK54_RS14425	0.74	-0.6
3,209,332	-		LRK54_RS14425	0.75	-1.3
3,209,333	+		LRK54_RS14425	0.75	+0.7
3,209,333	+		LRK54_RS14425	0.75	+0.7
3,209,333	+		LRK54_RS14425	0.75	-0.6
3,209,333	+		LRK54_RS14425	0.75	-1.2
3,209,333	+		LRK54_RS14425	0.75	-0.1
3,209,333	+		LRK54_RS14425	0.75	+0.6
3,209,334	-		LRK54_RS14425	0.75	-1.0
3,209,334	-		LRK54_RS14425	0.75	-1.2
3,209,334	-		LRK54_RS14425	0.75	-1.0
3,209,334	-		LRK54_RS14425	0.75	+0.1
3,209,334	-		LRK54_RS14425	0.75	-1.4
3,209,334	-		LRK54_RS14425	0.75	-0.8
3,209,334	-		LRK54_RS14425	0.75	+1.0
3,209,334	-		LRK54_RS14425	0.75	+0.5
3,209,360	+		LRK54_RS14425	0.77	+0.3
3,209,360	+		LRK54_RS14425	0.77	-0.5
3,209,360	+		LRK54_RS14425	0.77	-0.3
3,209,360	+		LRK54_RS14425	0.77	+1.3
3,209,361	-		LRK54_RS14425	0.77	-0.4
3,209,361	-		LRK54_RS14425	0.77	-0.5
3,209,361	-		LRK54_RS14425	0.77	-0.6
3,209,361	-		LRK54_RS14425	0.77	+0.4
3,209,361	-		LRK54_RS14425	0.77	+0.2
3,209,361	-		LRK54_RS14425	0.77	+0.9
3,209,361	-		LRK54_RS14425	0.77	-1.4
3,209,361	-		LRK54_RS14425	0.77	-0.2
3,209,361	-		LRK54_RS14425	0.77	-0.0
3,209,361	-		LRK54_RS14425	0.77	-0.1
3,209,361	-		LRK54_RS14425	0.77	-1.3
3,209,361	-		LRK54_RS14425	0.77	-0.5
3,209,492	+		LRK54_RS14425	0.89	+0.3
3,209,492	+		LRK54_RS14425	0.89	-0.7
3,209,492	+		LRK54_RS14425	0.89	-0.3
3,209,492	+		LRK54_RS14425	0.89	-0.8
3,209,492	+		LRK54_RS14425	0.89	+0.3
3,209,492	+		LRK54_RS14425	0.89	-0.7
3,209,492	+		LRK54_RS14425	0.89	+2.2
3,209,492	+		LRK54_RS14425	0.89	-0.2
3,209,492	+		LRK54_RS14425	0.89	+1.0
3,209,492	+		LRK54_RS14425	0.89	-0.2
3,209,492	+		LRK54_RS14425	0.89	-0.1
3,209,492	+		LRK54_RS14425	0.89	+1.0
3,209,492	+		LRK54_RS14425	0.89	+0.3
3,209,492	+		LRK54_RS14425	0.89	+0.2
3,209,492	+		LRK54_RS14425	0.89	+1.0
3,209,492	+		LRK54_RS14425	0.89	-2.0
3,209,492	+		LRK54_RS14425	0.89	+1.2
3,209,492	+		LRK54_RS14425	0.89	+0.0
3,209,492	+		LRK54_RS14425	0.89	+0.2
3,209,492	+		LRK54_RS14425	0.89	-0.3
3,209,492	+		LRK54_RS14425	0.89	-0.2
3,209,492	+		LRK54_RS14425	0.89	-1.7
3,209,492	+		LRK54_RS14425	0.89	+0.6
3,209,492	+		LRK54_RS14425	0.89	+1.3
3,209,492	+		LRK54_RS14425	0.89	-0.7
3,209,492	+		LRK54_RS14425	0.89	+3.0
3,209,492	+		LRK54_RS14425	0.89	-0.4
3,209,492	+		LRK54_RS14425	0.89	-1.1
3,209,492	+		LRK54_RS14425	0.89	+0.7
3,209,493	-		LRK54_RS14425	0.89	+0.6
3,209,493	-		LRK54_RS14425	0.89	-0.6
3,209,493	-		LRK54_RS14425	0.89	-0.6
3,209,493	-		LRK54_RS14425	0.89	+0.5
3,209,493	-		LRK54_RS14425	0.89	+0.7
3,209,493	-		LRK54_RS14425	0.89	-0.0
3,209,493	-		LRK54_RS14425	0.89	-0.7
3,209,493	-		LRK54_RS14425	0.89	+2.6
3,209,493	-		LRK54_RS14425	0.89	-1.7
3,209,493	-		LRK54_RS14425	0.89	-0.0
3,209,493	-		LRK54_RS14425	0.89	+1.2
3,209,493	-		LRK54_RS14425	0.89	+0.4
3,209,493	-		LRK54_RS14425	0.89	-0.4
3,209,493	-		LRK54_RS14425	0.89	-0.2
3,209,493	-		LRK54_RS14425	0.89	-0.7
3,209,493	-		LRK54_RS14425	0.89	-0.6
3,209,493	-		LRK54_RS14425	0.89	+2.0
3,209,493	-		LRK54_RS14425	0.89	+0.1
3,209,493	-		LRK54_RS14425	0.89	+0.1
3,209,493	-		LRK54_RS14425	0.89	-0.2
3,209,493	-		LRK54_RS14425	0.89	+0.1
3,209,493	-		LRK54_RS14425	0.89	+1.2
3,209,493	-		LRK54_RS14425	0.89	-0.2
3,209,493	-		LRK54_RS14425	0.89	-2.0
3,209,602	+				+0.8
3,209,602	+				-0.3
3,209,602	+				+0.0
3,209,602	+				-0.5
3,209,602	+				-0.0
3,209,602	+				+0.5
3,209,602	+				-0.6
3,209,602	+				-0.1
3,209,603	-				-1.7
3,209,603	-				-1.0
3,209,603	-				+0.0
3,209,603	-				+0.9
3,209,603	-				-1.6
3,209,603	-				-0.8
3,209,603	-				+0.1
3,209,603	-				+1.0
3,209,603	-				-0.0
3,209,603	-				-1.3
3,209,603	-				+1.2
3,209,603	-				-1.6
3,209,665	+				-0.4
3,209,665	+				-1.3
3,209,665	+				-2.5
3,209,665	+				+0.5
3,209,665	+				+1.0
3,209,666	-				+0.0
3,209,666	-				+1.0
3,209,666	-				+0.3
3,209,666	-				-1.0
3,209,713	+				+2.4
3,209,714	-				-0.0
3,209,714	-				+0.4
3,209,714	-				-0.4
3,209,927	+		LRK54_RS14430	0.20	-0.7
3,209,928	-		LRK54_RS14430	0.21	-1.2
3,209,961	+		LRK54_RS14430	0.24	+0.4
3,209,961	+		LRK54_RS14430	0.24	+0.2
3,209,962	-		LRK54_RS14430	0.25	+0.4
3,209,962	-		LRK54_RS14430	0.25	-0.0
3,209,962	-		LRK54_RS14430	0.25	-0.8
3,209,962	-		LRK54_RS14430	0.25	-1.5
3,210,029	+		LRK54_RS14430	0.33	-0.9
3,210,030	-		LRK54_RS14430	0.33	-0.6
3,210,030	-		LRK54_RS14430	0.33	+0.3
3,210,293	+		LRK54_RS14430	0.64	+1.0
3,210,293	+		LRK54_RS14430	0.64	+0.3
3,210,294	-		LRK54_RS14430	0.64	-1.3
3,210,294	-		LRK54_RS14430	0.64	-0.0
3,210,294	-		LRK54_RS14430	0.64	-2.7
3,210,294	-		LRK54_RS14430	0.64	+0.7
3,210,294	-		LRK54_RS14430	0.64	+0.3
3,210,320	+		LRK54_RS14430	0.67	-0.4
3,210,320	+		LRK54_RS14430	0.67	+0.7
3,210,320	+		LRK54_RS14430	0.67	+0.2
3,210,320	+		LRK54_RS14430	0.67	+1.5
3,210,320	+		LRK54_RS14430	0.67	+0.4
3,210,320	+		LRK54_RS14430	0.67	-0.2
3,210,320	+		LRK54_RS14430	0.67	-1.1
3,210,320	+		LRK54_RS14430	0.67	-1.3
3,210,321	-		LRK54_RS14430	0.68	-0.9
3,210,321	-		LRK54_RS14430	0.68	-1.2
3,210,321	-		LRK54_RS14430	0.68	-0.3
3,210,321	-		LRK54_RS14430	0.68	-1.8
3,210,321	-		LRK54_RS14430	0.68	-0.4
3,210,442	-		LRK54_RS14430	0.82	-1.0
3,210,557	+				+1.0
3,210,557	+				-0.2
3,210,557	+				-0.7
3,210,557	+				-2.0
3,210,557	+				-0.0
3,210,557	+				+0.2
3,210,557	+				+0.3
3,210,557	+				-0.0
3,210,557	+				-0.0
3,210,558	-				+0.2
3,210,558	-				-0.5
3,210,558	-				-0.6
3,210,558	-				-0.0
3,210,558	-				-0.3
3,210,558	-				+0.1
3,210,558	-				+0.3
3,210,558	-				+0.1