Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15625

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS15620 and AZOBR_RS15625 are separated by 240 nucleotidesAZOBR_RS15625 and AZOBR_RS15630 are separated by 396 nucleotides AZOBR_RS15620: AZOBR_RS15620 - GntR family transcriptional regulator, at 261,214 to 262,008 _RS15620 AZOBR_RS15625: AZOBR_RS15625 - deoxycytidine triphosphate deaminase, at 262,249 to 262,833 _RS15625 AZOBR_RS15630: AZOBR_RS15630 - hypothetical protein, at 263,230 to 263,463 _RS15630 Position (kb) 262 263Strain fitness (log2 ratio) -3 -2 -1 0 1at 261.542 kb on + strand, within AZOBR_RS15620at 261.581 kb on + strand, within AZOBR_RS15620at 261.582 kb on - strand, within AZOBR_RS15620at 262.042 kb on + strandat 262.042 kb on + strandat 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 263.200 kb on + strandat 263.830 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
261,542 + AZOBR_RS15620 0.41 +0.0
261,581 + AZOBR_RS15620 0.46 -0.1
261,582 - AZOBR_RS15620 0.46 -1.6
262,042 + +0.6
262,042 + -3.4
262,942 - +0.2
262,942 - +0.3
262,942 - +0.6
262,942 - +0.8
262,942 - -1.9
262,942 - -0.1
263,200 + +0.6
263,830 + -0.9

Or see this region's nucleotide sequence