Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10550

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10545 and AZOBR_RS10550 are separated by 399 nucleotides AZOBR_RS10545: AZOBR_RS10545 - threonine synthase, at 2,212,234 to 2,213,646 _RS10545 AZOBR_RS10550: AZOBR_RS10550 - 1 4-beta-glucanase, at 2,214,046 to 2,215,137 _RS10550 Position (kb) 2214 2215 2216Strain fitness (log2 ratio) -2 -1 0 1at 2213.715 kb on - strandat 2213.715 kb on - strandat 2213.719 kb on - strandat 2214.077 kb on + strandat 2214.077 kb on + strandat 2214.155 kb on + strandat 2214.155 kb on + strandat 2214.227 kb on + strand, within AZOBR_RS10550at 2214.227 kb on + strand, within AZOBR_RS10550at 2214.248 kb on + strand, within AZOBR_RS10550at 2214.248 kb on + strand, within AZOBR_RS10550at 2214.248 kb on + strand, within AZOBR_RS10550at 2214.248 kb on + strand, within AZOBR_RS10550at 2214.248 kb on + strand, within AZOBR_RS10550at 2214.248 kb on + strand, within AZOBR_RS10550at 2214.249 kb on - strand, within AZOBR_RS10550at 2214.249 kb on - strand, within AZOBR_RS10550at 2214.249 kb on - strand, within AZOBR_RS10550at 2214.249 kb on - strand, within AZOBR_RS10550at 2214.249 kb on - strand, within AZOBR_RS10550at 2214.428 kb on + strand, within AZOBR_RS10550at 2214.689 kb on + strand, within AZOBR_RS10550at 2214.690 kb on - strand, within AZOBR_RS10550at 2214.750 kb on - strand, within AZOBR_RS10550at 2214.833 kb on + strand, within AZOBR_RS10550at 2214.870 kb on + strand, within AZOBR_RS10550at 2214.871 kb on - strand, within AZOBR_RS10550at 2214.871 kb on - strand, within AZOBR_RS10550at 2215.222 kb on + strandat 2215.222 kb on + strandat 2215.809 kb on + strandat 2215.809 kb on + strandat 2215.809 kb on + strandat 2215.809 kb on + strandat 2215.810 kb on - strandat 2215.883 kb on + strandat 2215.884 kb on - strandat 2215.884 kb on - strandat 2216.001 kb on + strandat 2216.052 kb on + strandat 2216.052 kb on + strandat 2216.053 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,213,715 - -0.1
2,213,715 - +1.1
2,213,719 - +1.2
2,214,077 + -0.1
2,214,077 + +1.0
2,214,155 + -0.1
2,214,155 + -0.3
2,214,227 + AZOBR_RS10550 0.17 -0.8
2,214,227 + AZOBR_RS10550 0.17 +0.5
2,214,248 + AZOBR_RS10550 0.18 -2.2
2,214,248 + AZOBR_RS10550 0.18 -0.8
2,214,248 + AZOBR_RS10550 0.18 -0.0
2,214,248 + AZOBR_RS10550 0.18 +0.1
2,214,248 + AZOBR_RS10550 0.18 -0.4
2,214,248 + AZOBR_RS10550 0.18 -0.5
2,214,249 - AZOBR_RS10550 0.19 +0.1
2,214,249 - AZOBR_RS10550 0.19 -0.3
2,214,249 - AZOBR_RS10550 0.19 +0.1
2,214,249 - AZOBR_RS10550 0.19 +0.1
2,214,249 - AZOBR_RS10550 0.19 -0.0
2,214,428 + AZOBR_RS10550 0.35 +0.2
2,214,689 + AZOBR_RS10550 0.59 +0.2
2,214,690 - AZOBR_RS10550 0.59 +0.5
2,214,750 - AZOBR_RS10550 0.64 +0.8
2,214,833 + AZOBR_RS10550 0.72 -0.2
2,214,870 + AZOBR_RS10550 0.75 -0.3
2,214,871 - AZOBR_RS10550 0.76 +0.2
2,214,871 - AZOBR_RS10550 0.76 -1.0
2,215,222 + +0.4
2,215,222 + +0.3
2,215,809 + -0.1
2,215,809 + +0.2
2,215,809 + +0.0
2,215,809 + -0.2
2,215,810 - +0.5
2,215,883 + +0.0
2,215,884 - +1.0
2,215,884 - +1.3
2,216,001 + +0.1
2,216,052 + -0.2
2,216,052 + +0.1
2,216,053 - +0.7

Or see this region's nucleotide sequence